Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Forward (+)

69097806 .. 69098693

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTTCCAAGTCCATATTTTCAGTAGCAATATTGCTACTATTTCTGGCTGTTGGATCCAATGCAGGTAGAATTGCTATATATTGGGGACAGAATGGGAATGAAGGCACATTAGCGGAAACATGTGCTTCAGGGAACTACAAATTCGTAAACATAGCTTTCCTCTCATCATTCGGTAATGGCCAAACCCCTGCCATAAACCTCGCCGGTCACTGTGACCCGTCTACCAACGAATGCACCAAGTTGAGCCCCGAGATCAAGTCATGCCAGGCCAAAGGCATTAAGGTCATACTCTCCATAGGAGGAGCTGCAGGGAGCTACTCTTTGGCTTCATCCGACAATGCCCGCCAAGTTGCTACTTACTTGTGGAACAACTTCTTGGGAGGACAGTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAAAGGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTCAACACAGGCCTCTTCGACTTTGTTTGGTACACTTCTGGCGATATTTCAAATCTCAAAGATGGTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAAGATTTTCTTCGGACTTCCTGCTGCACCTCAAGCTGCCGGTAGTGGATTTATTCCTGCGACTGATCTCAACTCACAAGTCCTTCCGGCTATCAAAAATTCAGCTAAATATGGAGGTGTCATGCTTTGGTCGAAGTATTATGATGATCTCGATGGATACAGCTCCTCCATCAAGAATGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

260

Amino Acids

27.42

Weight (kDa)

8.19

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	24 - 126	7e-08	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	2 cut(s)	116, 346
AclWI	GGATC	2 cut(s)	51, 64
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	143, 694
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	399
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	399, 549
AjnI	CCWGG	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	6 cut(s)	158, 308, 318, 632, 701, 759
AluI	AGCT	6 cut(s)	158, 308, 318, 632, 701, 759
AlwI	GGATC	2 cut(s)	51, 64
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	181, 270, 401, 508
ApeKI	GCWGC	4 cut(s)	308, 455, 620, 632
ApoI	RAATTY	2 cut(s)	143, 694
Asp700I	GAANNNNTTC	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	251
BbvI	GCAGC	4 cut(s)	295, 442, 607, 619
BccI	CCATC	4 cut(s)	419, 554, 743, 773
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	746
BfaI	CTAG	1 cut(s)	781
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	746
BisI	GCNGC	4 cut(s)	309, 456, 621, 633
BlsI	GCNGC	4 cut(s)	310, 457, 622, 634
Bme1390I	CCNGG	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	2 cut(s)	403, 469
BpuEI	CTTGAG	1 cut(s)	612
BsaXI	ACNNNNNCTCC	6 cut(s)	402, 432, 442, 472, 746, 776
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse118I	RCCGGY	2 cut(s)	206, 635
Bse3DI	GCAATG	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	332, 430
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	578
BseRI	GAGGAG	2 cut(s)	318, 751
BseXI	GCAGC	4 cut(s)	295, 442, 607, 619
BsgI	GTGCAG	2 cut(s)	576, 606
BshFI	GGCC	4 cut(s)	183, 272, 403, 510
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	3 cut(s)	207, 636, 683
BslFI	GGGAC	2 cut(s)	102, 453
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmFI	GGGAC	2 cut(s)	102, 453
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	4 cut(s)	183, 272, 403, 510
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	4 cut(s)	56, 255, 661, 742
BspACI	CCGC	2 cut(s)	116, 346
BspANI	GGCC	4 cut(s)	183, 272, 403, 510
BspLI	GGNNCC	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	2 cut(s)	51, 64
BsrDI	GCAATG	1 cut(s)	578
BsrFI	RCCGGY	2 cut(s)	206, 635
BssAI	RCCGGY	2 cut(s)	206, 635
BssMI	GATC	4 cut(s)	56, 255, 661, 742
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	3 cut(s)	215, 390, 465
Bst6I	CTCTTC	2 cut(s)	400, 518
BstC8I	GCNNGC	1 cut(s)	346
BstENI	CCTNNNNNAGG	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	332, 430
BstKTI	GATC	4 cut(s)	59, 258, 664, 745
BstMBI	GATC	4 cut(s)	56, 255, 661, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 629
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	4 cut(s)	295, 442, 607, 619
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	4 cut(s)	183, 272, 403, 510
BtsCI	GGATG	2 cut(s)	332, 430
BtsIMutI	CAGTG	2 cut(s)	211, 470
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	346
Cfr10I	RCCGGY	2 cut(s)	206, 635
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	3 cut(s)	123, 264, 718
CviQI	GTAC	1 cut(s)	529
DpnI	GATC	4 cut(s)	58, 257, 663, 744
DpnII	GATC	4 cut(s)	56, 255, 661, 742
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	400, 518
EarI	CTCTTC	2 cut(s)	400, 518
Eco147I	AGGCCT	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	3 cut(s)	126, 267, 721
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	2 cut(s)	102, 453
FatI	CATG	3 cut(s)	122, 263, 717
FauI	CCCGC	1 cut(s)	353
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	4 cut(s)	309, 456, 621, 633
FokI	GGATG	2 cut(s)	319, 437
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	309, 456, 621, 633
FspBI	CTAG	1 cut(s)	781
GluI	GCNGC	4 cut(s)	309, 456, 621, 633
HaeIII	GGCC	4 cut(s)	183, 272, 403, 510
HapII	CCGG	3 cut(s)	207, 636, 683
Hin1II	CATG	3 cut(s)	126, 267, 721
HpaII	CCGG	3 cut(s)	207, 636, 683
Hpy166II	GTNNAC	4 cut(s)	151, 225, 445, 531
Hpy188I	TCNGA	2 cut(s)	337, 611
Hpy188III	TCNNGA	3 cut(s)	476, 746, 769
Hpy8I	GTNNAC	4 cut(s)	151, 225, 445, 531
HpyAV	CCTTC	2 cut(s)	98, 689
HpyCH4III	ACNGT	3 cut(s)	215, 390, 465
HpyCH4V	TGCA	6 cut(s)	65, 237, 311, 497, 593, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 629
Hsp92II	CATG	3 cut(s)	126, 267, 721
Kzo9I	GATC	4 cut(s)	56, 255, 661, 742
LmnI	GCTCC	4 cut(s)	305, 315, 463, 764
Lsp1109I	GCAGC	4 cut(s)	295, 442, 607, 619
LweI	GCATC	2 cut(s)	403, 469
MaeI	CTAG	1 cut(s)	781
MaeIII	GTNAC	2 cut(s)	209, 215
MalI	GATC	4 cut(s)	58, 257, 663, 744
MboI	GATC	4 cut(s)	56, 255, 661, 742
MboII	GAAGA	3 cut(s)	387, 505, 598
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	251
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	3 cut(s)	72, 143, 694
MluNI	TGGCCA	1 cut(s)	183
MmeI	TCCRAC	4 cut(s)	34, 360, 469, 545
MnlI	CCTC	9 cut(s)	173, 212, 296, 377, 403, 521, 636, 704, 772
Mox20I	TGGCCA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	183
MspI	CCGG	3 cut(s)	207, 636, 683
MspR9I	CCNGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	590, 629
NdeII	GATC	4 cut(s)	56, 255, 661, 742
NlaIII	CATG	3 cut(s)	126, 267, 721
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	2 cut(s)	209, 215
NspI	RCATGY	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	510
PciI	ACATGT	1 cut(s)	122
PctI	GAATGC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	310, 457, 622, 634
PscI	ACATGT	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	309, 456, 621, 633
Sau3AI	GATC	4 cut(s)	56, 255, 661, 742
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	251
SfaNI	GCATC	2 cut(s)	403, 469
SfcI	CTRYAG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	627
SmoI	CTYRAG	1 cut(s)	627
Sse9I	AATT	3 cut(s)	72, 143, 694
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	2 cut(s)	116, 346
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	1 cut(s)	781
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	3 cut(s)	215, 390, 465
TaqI	TCGA	3 cut(s)	516, 728, 747
TasI	AATT	3 cut(s)	72, 143, 694
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	218, 470
TseFI	GTSAC	2 cut(s)	209, 215
TseI	GCWGC	4 cut(s)	308, 455, 620, 632
Tsp45I	GTSAC	2 cut(s)	209, 215
TspDTI	ATGAA	2 cut(s)	117, 321
TspRI	CASTG	2 cut(s)	218, 470
XagI	CCTNNNNNAGG	1 cut(s)	397
XapI	RAATTY	2 cut(s)	143, 694
XceI	RCATGY	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.