Rh6BG404000

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000601
Physical Location & Seq
Reverse (-)
63071015 .. 63074658
3644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG404000.1

Sequence Viewer

Length: 1056 bp
ATGGCCACGTCTCCTCTTCTCTCATTCCTTGTCTTAATCTCATCGCTGGTCCTAATCCAATCCTCTCACGGTGTTGACATAGCCATCTATTGGGGGCAATCCGGGAAGGAAGGAACCCTAAACCAAACGTGCGCCACCGGAAAATACAAGTACGTGAACATTGCCTTCCTCCACGACTTCGGCGGCAGCCAAACCCCACAAATCAACCTAGCAGACCACTGCAACCCAGCCACGAATGGTTGCACCGCCGTTGGCCCCGAAGTCACATTCTGCCAGAGCCTAGGAGTCAAGGTGTTCCTCTCCCTCGGCGGCGGAAGCGGAAACTACTCTCTATCTTCTGCTTCTGACGCAAAAGATGTAGCCAATTACCTATGGAACAGTTTCCTTGGGGAGAAAGGAAACGGCAGAGACAAGTCTACTACTACACGTCCCTTCGGCGATGCCGTTTTGGATGGGATAGATTTCGTCATAGACCAAAATGCAAATCCATATTGGGATGACCTTGCACGTTATCTCAAGGCGTATAGCACACCAAGAAGAGCTGTGTACTTAGCTGCAGCTCCTCAGTGTCCATTTCCCGATGCGTTCGTCGGCGGTGCGATTAGTACGGGGCTTTTCGATTATGTTTGGGTTCAGTTCTACAACAATCCTCCATGCGAGTATATCTCAGGAAACACTGGCAGTATTTTGAACTCGTGGAATAAATGGACTACGTCTATACAAGCAGGGAAGATATTCTTAGGGTTGCCGGCGGCTCCAGAGGCGGCTGGAGACGGGTTCATTCCGGCTACGGTGCTGAATTCTGAGATACTTCCGGTGATAAAGAAGTCGTCGAAGTATGGTGGCGTGATGTTGTGGTCAAAGTATTATGATGATCAAAGTGGTTATAGTTCCTCCATTATCAAAAATGCACTATTACCATCAGCGAATGGTACAACTTCAGTAAACCCTGCTGCAGCTCCAGGAGGAAGTCCAGGAAAGAAGCAGAGTAATAAAGCTCGGACTATAATCGTTATTGTAGTGGCAATTGTTGTTTCTCTGGCTCATCCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

351

Amino Acids

37.22

Weight (kDa)

8.1

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 27 - 252 1.2e-13 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AccI GTMKAC 1 cut(s) 416
AciI CCGC 8 cut(s) 183, 246, 309, 312, 318, 594, 752, 764
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 799
AcuI CTGAAG 1 cut(s) 924
AfaI GTAC 4 cut(s) 152, 548, 607, 934
AfiI CCNNNNNNNGG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 1 cut(s) 691
AjiI CACGTC 2 cut(s) 9, 428
AjnI CCWGG 2 cut(s) 961, 973
AluBI AGCT 5 cut(s) 542, 554, 560, 959, 998
AluI AGCT 5 cut(s) 542, 554, 560, 959, 998
Alw26I GTCTC 3 cut(s) 15, 402, 765
AoxI GGCC 2 cut(s) 3, 253
ApeKI GCWGC 5 cut(s) 186, 554, 557, 953, 956
ApoI RAATTY 1 cut(s) 799
Asp700I GAANNNNTTC 2 cut(s) 380, 734
AspA2I CCTAGG 1 cut(s) 280
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 49, 254
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 829
AvaII GGWCC 1 cut(s) 49
AvrII CCTAGG 1 cut(s) 280
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 694
BbvI GCAGC 5 cut(s) 198, 541, 569, 940, 968
BccI CCATC 3 cut(s) 92, 446, 928
BceAI ACGGC 3 cut(s) 233, 418, 428
BciT130I CCWGG 2 cut(s) 963, 975
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 3 cut(s) 15, 402, 765
BfaI CTAG 2 cut(s) 209, 281
BfmI CTRYAG 2 cut(s) 555, 954
BisI GCNGC 9 cut(s) 184, 187, 310, 555, 558, 753, 765, 954, 957
BlnI CCTAGG 1 cut(s) 280
BlsI GCNGC 9 cut(s) 185, 188, 311, 556, 559, 754, 766, 955, 958
Bme1390I CCNGG 3 cut(s) 103, 963, 975
Bme18I GGWCC 1 cut(s) 49
BmgBI CACGTC 2 cut(s) 9, 428
BmgT120I GGNCC 2 cut(s) 49, 254
BmiI GGNNCC 3 cut(s) 115, 256, 756
BmrFI CCNGG 3 cut(s) 103, 963, 975
BmsI GCATC 2 cut(s) 430, 571
BplI GAGNNNNNCTC 2 cut(s) 650, 682
BpmI CTGGAG 3 cut(s) 741, 789, 945
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 280, 304, 385
BsaWI WCCGGW 2 cut(s) 137, 814
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 748
Bse1I ACTGG 1 cut(s) 682
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 2 cut(s) 963, 975
BseDI CCNNGG 3 cut(s) 280, 304, 385
BseGI GGATG 3 cut(s) 457, 502, 1045
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 3 cut(s) 578, 681, 795
BseNI ACTGG 1 cut(s) 682
BseRI GAGGAG 1 cut(s) 552
BseXI GCAGC 5 cut(s) 198, 541, 569, 940, 968
BseYI CCCAGC 1 cut(s) 226
BshFI GGCC 2 cut(s) 5, 255
BsiSI CCGG 5 cut(s) 102, 138, 749, 785, 815
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 3 cut(s) 15, 402, 765
BsmBI CGTCTC 2 cut(s) 15, 765
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 2 cut(s) 5, 255
Bsp143I GATC 1 cut(s) 874
BspACI CCGC 8 cut(s) 183, 246, 309, 312, 318, 594, 752, 764
BspANI GGCC 2 cut(s) 5, 255
BspCNI CTCAG 3 cut(s) 577, 680, 796
BspLI GGNNCC 3 cut(s) 115, 256, 756
BspMAI CTGCAG 2 cut(s) 559, 958
BspQI GCTCTTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 748
BsrI ACTGG 1 cut(s) 682
BssAI RCCGGY 1 cut(s) 748
BssECI CCNNGG 3 cut(s) 280, 304, 385
BssMI GATC 1 cut(s) 874
BssSI CACGAG 1 cut(s) 694
BssT1I CCWWGG 2 cut(s) 280, 385
Bst2BI CACGAG 1 cut(s) 694
Bst2UI CCWGG 2 cut(s) 963, 975
Bst4CI ACNGT 3 cut(s) 71, 380, 793
Bst6I CTCTTC 2 cut(s) 21, 532
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 5 cut(s) 550, 564, 667, 739, 804
BstF5I GGATG 3 cut(s) 457, 502, 1045
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 1 cut(s) 877
BstMAI GTCTC 3 cut(s) 15, 402, 765
BstMBI GATC 1 cut(s) 874
BstMWI GCNNNNNNNGC 3 cut(s) 315, 347, 761
BstNI CCWGG 2 cut(s) 963, 975
BstSCI CCNGG 3 cut(s) 101, 961, 973
BstSFI CTRYAG 2 cut(s) 555, 954
BstV1I GCAGC 5 cut(s) 198, 541, 569, 940, 968
BsuRI GGCC 2 cut(s) 5, 255
BtgZI GCGATG 2 cut(s) 27, 453
BtrI CACGTC 2 cut(s) 9, 428
BtsCI GGATG 3 cut(s) 457, 502, 1045
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 3 cut(s) 217, 572, 675
Cac8I GCNNGC 1 cut(s) 750
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 748
Cfr13I GGNCC 2 cut(s) 49, 254
CseI GACGC 1 cut(s) 356
Csp6I GTAC 4 cut(s) 151, 547, 606, 933
CviAII CATG 1 cut(s) 654
CviQI GTAC 4 cut(s) 151, 547, 606, 933
DdeI CTNAG 5 cut(s) 550, 564, 667, 739, 804
DpnI GATC 1 cut(s) 876
DpnII GATC 1 cut(s) 874
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 21, 532
EarI CTCTTC 2 cut(s) 21, 532
EciI GGCGGA 1 cut(s) 327
Eco130I CCWWGG 2 cut(s) 280, 385
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 924
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 2 cut(s) 961, 973
EcoT14I CCWWGG 2 cut(s) 280, 385
ErhI CCWWGG 2 cut(s) 280, 385
Esp3I CGTCTC 2 cut(s) 15, 765
FaeI CATG 1 cut(s) 657
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 1 cut(s) 414
FatI CATG 1 cut(s) 653
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 416
Fnu4HI GCNGC 9 cut(s) 184, 187, 310, 555, 558, 753, 765, 954, 957
FokI GGATG 3 cut(s) 464, 509, 1032
Fsp4HI GCNGC 9 cut(s) 184, 187, 310, 555, 558, 753, 765, 954, 957
FspBI CTAG 2 cut(s) 209, 281
GlaI GCGC 1 cut(s) 133
GluI GCNGC 9 cut(s) 184, 187, 310, 555, 558, 753, 765, 954, 957
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 3 cut(s) 741, 789, 945
HaeIII GGCC 2 cut(s) 5, 255
HapII CCGG 5 cut(s) 102, 138, 749, 785, 815
HgaI GACGC 1 cut(s) 356
HhaI GCGC 1 cut(s) 134
Hin1II CATG 1 cut(s) 657
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 285
HpaII CCGG 5 cut(s) 102, 138, 749, 785, 815
HphI GGTGA 1 cut(s) 829
Hpy166II GTNNAC 5 cut(s) 76, 157, 417, 547, 946
Hpy188I TCNGA 4 cut(s) 346, 805, 1002, 1050
Hpy188III TCNNGA 3 cut(s) 578, 669, 758
Hpy8I GTNNAC 5 cut(s) 76, 157, 417, 547, 946
Hpy99I CGWCG 2 cut(s) 593, 835
HpyAV CCTTC 4 cut(s) 100, 104, 175, 442
HpyCH4III ACNGT 3 cut(s) 71, 380, 793
HpyCH4IV ACGT 6 cut(s) 8, 128, 153, 427, 508, 713
HpyCH4V TGCA 7 cut(s) 222, 243, 482, 506, 557, 911, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 315, 347, 761
HpyF3I CTNAG 5 cut(s) 550, 564, 667, 739, 804
HpySE526I ACGT 6 cut(s) 8, 128, 153, 427, 508, 713
Hsp92II CATG 1 cut(s) 657
HspAI GCGC 1 cut(s) 132
KroI GCCGGC 1 cut(s) 748
KroNI GCCGGC 1 cut(s) 750
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 1 cut(s) 874
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 3 cut(s) 565, 760, 964
Lsp1109I GCAGC 5 cut(s) 198, 541, 569, 940, 968
LweI GCATC 2 cut(s) 430, 571
MaeI CTAG 2 cut(s) 209, 281
MaeII ACGT 6 cut(s) 8, 128, 153, 427, 508, 713
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 876
MboI GATC 1 cut(s) 874
MboII GAAGA 4 cut(s) 8, 327, 549, 742
MfeI CAATTG 1 cut(s) 1026
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 364, 799, 1026
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 294
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 748
MroXI GAANNNNTTC 2 cut(s) 380, 734
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 5 cut(s) 102, 138, 749, 785, 815
MspR9I CCNGG 3 cut(s) 103, 963, 975
MunI CAATTG 1 cut(s) 1026
MvaI CCWGG 2 cut(s) 963, 975
MwoI GCNNNNNNNGC 3 cut(s) 315, 347, 761
NaeI GCCGGC 1 cut(s) 750
NciI CCSGG 1 cut(s) 103
NdeII GATC 1 cut(s) 874
NgoMIV GCCGGC 1 cut(s) 748
NlaIII CATG 1 cut(s) 657
NlaIV GGNNCC 3 cut(s) 115, 256, 756
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 750
PdmI GAANNNNTTC 2 cut(s) 380, 734
PflFI GACNNNGTC 1 cut(s) 712
PflMI CCANNNNNTGG 1 cut(s) 90
PfoI TCCNGGA 3 cut(s) 101, 961, 973
PkrI GCNGC 9 cut(s) 185, 188, 311, 556, 559, 754, 766, 955, 958
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 961, 973
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 2 cut(s) 961, 973
PspN4I GGNNCC 3 cut(s) 115, 256, 756
PspPI GGNCC 2 cut(s) 49, 254
PstI CTGCAG 2 cut(s) 559, 958
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 4 cut(s) 152, 548, 607, 934
RsaNI GTAC 4 cut(s) 151, 547, 606, 933
SapI GCTCTTC 1 cut(s) 532
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 9 cut(s) 184, 187, 310, 555, 558, 753, 765, 954, 957
Sau3AI GATC 1 cut(s) 874
Sau96I GGNCC 2 cut(s) 49, 254
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 3 cut(s) 103, 963, 975
SfaNI GCATC 2 cut(s) 430, 571
SfcI CTRYAG 2 cut(s) 555, 954
SinI GGWCC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 3 cut(s) 364, 799, 1026
SsiI CCGC 8 cut(s) 183, 246, 309, 312, 318, 594, 752, 764
SspMI CTAG 2 cut(s) 209, 281
StyD4I CCNGG 3 cut(s) 101, 961, 973
StyI CCWWGG 2 cut(s) 280, 385
TaaI ACNGT 3 cut(s) 71, 380, 793
TaiI ACGT 6 cut(s) 11, 131, 156, 430, 511, 716
TaqI TCGA 2 cut(s) 618, 833
TasI AATT 3 cut(s) 364, 799, 1026
TatI WGTACW 1 cut(s) 546
TauI GCSGC 4 cut(s) 186, 312, 755, 767
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 3 cut(s) 224, 572, 682
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 5 cut(s) 186, 554, 557, 953, 956
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 769
TspRI CASTG 3 cut(s) 224, 572, 682
Tth111I GACNNNGTC 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 799
XmaJI CCTAGG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 416
XmnI GAANNNNTTC 2 cut(s) 380, 734
XspI CTAG 2 cut(s) 209, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.