Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Forward (+)

34697607 .. 34697981

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45190

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGAATACATCAAGATGAGAATACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTCAACACAGGCCTCTTCGACTTTGTTTGGGTACAGTTCTACAACAACCCAAGATCTGGTGATATTTCAAATCTCGAAGATGGTTGGAAGCAATGGACTTCCGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCCCAAGCTGCTGGTAGTGGATTTATTCCAGCGGCTGATCTCAACTCACAAGTCCTTCCGGCTATCAAGAATTCAGCTAAATATGGAGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTAGATGGATACAGCTCTTCCATCAAGAATGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

124

Amino Acids

13.57

Weight (kDa)

4.81

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AciI	CCGC	2 cut(s)	174, 248
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	141
AluBI	AGCT	3 cut(s)	224, 293, 351
AluI	AGCT	3 cut(s)	224, 293, 351
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	3 cut(s)	29, 212, 224
ApoI	RAATTY	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	16, 199, 211
BccI	CCATC	3 cut(s)	146, 335, 365
BciVI	GTATCC	1 cut(s)	338
BfaI	CTAG	2 cut(s)	338, 373
BfuI	GTATCC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	4 cut(s)	30, 213, 225, 249
BlsI	GCNGC	4 cut(s)	31, 214, 226, 250
Bme18I	GGWCC	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	318
BmsI	GCATC	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	170
BseXI	GCAGC	3 cut(s)	16, 199, 211
BsgI	GTGCAG	2 cut(s)	168, 198
BshFI	GGCC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	125, 253, 334
BspACI	CCGC	2 cut(s)	174, 248
BspANI	GGCC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	170
BssMI	GATC	3 cut(s)	125, 253, 334
Bst4CI	ACNGT	2 cut(s)	39, 108
Bst6I	CTCTTC	2 cut(s)	92, 358
BstDEI	CTNAG	1 cut(s)	199
BstKTI	GATC	3 cut(s)	128, 256, 337
BstMBI	GATC	3 cut(s)	125, 253, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 221
BstV1I	GCAGC	3 cut(s)	16, 199, 211
BstX2I	RGATCY	1 cut(s)	125
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	6 cut(s)	84, 224, 251, 278, 293, 351
CviKI_1	RGCY	6 cut(s)	84, 224, 251, 278, 293, 351
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	3 cut(s)	127, 255, 336
DpnII	GATC	3 cut(s)	125, 253, 334
Eam1104I	CTCTTC	2 cut(s)	92, 358
EarI	CTCTTC	2 cut(s)	92, 358
EciI	GGCGGA	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	286
FaeI	CATG	1 cut(s)	313
FaiI	YATR	5 cut(s)	60, 189, 300, 311, 330
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	30, 213, 225, 249
Fsp4HI	GCNGC	4 cut(s)	30, 213, 225, 249
FspBI	CTAG	2 cut(s)	338, 373
GluI	GCNGC	4 cut(s)	30, 213, 225, 249
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	313
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	143
Hpy188III	TCNNGA	6 cut(s)	14, 50, 146, 283, 338, 361
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	2 cut(s)	39, 108
HpyCH4V	TGCA	3 cut(s)	71, 185, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 221
HpyF3I	CTNAG	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	125, 253, 334
LguI	GCTCTTC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	63, 66, 114, 195, 213, 222, 258, 288
Lsp1109I	GCAGC	3 cut(s)	16, 199, 211
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	338, 373
MalI	GATC	3 cut(s)	127, 255, 336
MboI	GATC	3 cut(s)	125, 253, 334
MboII	GAAGA	3 cut(s)	79, 161, 345
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	43, 137
MnlI	CCTC	2 cut(s)	95, 296
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	182, 221
NdeII	GATC	3 cut(s)	125, 253, 334
NlaIII	CATG	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	4 cut(s)	31, 214, 226, 250
PspPI	GGNCC	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	358
SatI	GCNGC	4 cut(s)	30, 213, 225, 249
Sau3AI	GATC	3 cut(s)	125, 253, 334
Sau96I	GGNCC	1 cut(s)	318
SetI	ASST	4 cut(s)	226, 295, 307, 353
SfaNI	GCATC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	286
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	2 cut(s)	174, 248
SspMI	CTAG	2 cut(s)	338, 373
StuI	AGGCCT	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	39, 108
TaqI	TCGA	2 cut(s)	90, 147
TasI	AATT	1 cut(s)	286
TauI	GCSGC	1 cut(s)	251
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	3 cut(s)	29, 212, 224
TspRI	CASTG	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	337
XspI	CTAG	2 cut(s)	338, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.