Rroxscaffold_4G00279940

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000601
Physical Location & Seq
Forward (+)
2590429 .. 2594068
3640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279940.1

Sequence Viewer

Length: 1194 bp
ATGGCCACGTCTCCTCTTCTCTCACTCCTTGTCCTAATCTCATTTCTGGTCCTAATCCAACCCTCTCACGGTGGTGGCATAGCCATCTATTGGGGGCAAAACGGGAACGAAGGAACCCTAAAGCAAACGTGCGCCACCGGAAAATACAAATACGTGAACATTGCCTTCCTCAACGTCTTCGGCAGCGGCCAAACACCACAAATCAACCTAGCAGGCCACTGCAACCCAGCCTCGAATGGTTGTGCCGCTGTTGGCCCCGAAGTCACATTCTGCCAGAGCCTAGGAGTCAAGGTGTTCCTCTCCCTCGGCGGCGGCATTGGAAACTACTCTTTATCTTCTGCTTCTGATGCAAAATATGTAGCCAATTACCTCTGGAATAGTTTCCTGGGCGGAAATGGAAAAGGCACAGACAAATCTACTACTACACGTCCCTTCGGCGACGCCGTTTTGGACGGGATAGATTTCGACATAGAGCAAGGTGCAAATCCATATTGGGATGACCTTGCACGTTATCTCAAGGCGTATAGCAAACCAAGAAGAGCTGTGTACTTAGCTGCAGCTCCTCAGTGTCCATTTCCCGATGCGTTCGTCGGCGGTGCGATTAGTACAGGGCTTTTCGACTATGTTTGGGTTCAGTTCTACAACAATCCTCCATGCCAGTATAGCTCAGGTAACACTGACAATATTCTAAACTCCTGGAATAAATGGACTACGTCTATACAAGCAGGGAAGATATTCCTGGGGTTGCCGGCGGCTCCAGCGGCGGCTGGAAGTGGGTTCATTCCGGCTACGGTGCTGAATTCTAAGATACTTCCGGTGATAAAGAAGTCGTCGAAGTATGGTGGCGTGATGTTGTGGTCAAAGTACTATGATGATCAAAGTGGTTATAGTTCCTCCATTATCAAAAATAGCACTCAAGTTTATACCCAACCCGAGCCTTGTATCCAATCGGATACCCTTGTACACCCTCTCTCAATCCTAGAAGATTACTCTACCCCAAGAGCTATACACACCCTTGAACACACTCCCCCTATCTTCTACATCTTGAAGACCCTTGGAGTTGCTACTGAACCTCTCCTTATCTGGAGTTTGGGCTCTCTGCCCTCTCTCACTTCTTGCTGCAACCTTTCATGCCAATATATAGGCAGTGCACTTCATACACATACTATGCAGCGAGTGGAACCAAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

397

Amino Acids

42.68

Weight (kDa)

7.95

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 27 - 252 2.7e-16 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AciI CCGC 9 cut(s) 186, 246, 309, 312, 390, 594, 752, 761, 764
AcoI YGGCCR 2 cut(s) 3, 187
AcsI RAATTY 1 cut(s) 799
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 4 cut(s) 548, 607, 866, 963
AfiI CCNNNNNNNGG 2 cut(s) 68, 90
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 2 cut(s) 1019, 1048
AjiI CACGTC 2 cut(s) 9, 428
AjnI CCWGG 3 cut(s) 384, 695, 738
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 5 cut(s) 542, 554, 560, 666, 1004
AluI AGCT 5 cut(s) 542, 554, 560, 666, 1004
Alw21I GWGCWC 1 cut(s) 1153
Alw26I GTCTC 1 cut(s) 15
Alw44I GTGCAC 1 cut(s) 1149
Ama87I CYCGRG 1 cut(s) 932
AoxI GGCC 4 cut(s) 3, 187, 214, 253
ApaLI GTGCAC 1 cut(s) 1149
ApeKI GCWGC 5 cut(s) 183, 554, 557, 1119, 1171
ApoI RAATTY 1 cut(s) 799
Asp700I GAANNNNTTC 2 cut(s) 380, 734
AspA2I CCTAGG 1 cut(s) 280
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 49, 254
AsuHPI GGTGA 1 cut(s) 829
AvaI CYCGRG 1 cut(s) 932
AvaII GGWCC 1 cut(s) 49
AvrII CCTAGG 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 1153
BaeI ACNNNNGTAYC 2 cut(s) 945, 978
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 1097
BbsI GAAGAC 2 cut(s) 169, 1055
Bbv12I GWGCWC 1 cut(s) 1153
BbvI GCAGC 5 cut(s) 195, 541, 569, 1106, 1183
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 428
BciT130I CCWGG 3 cut(s) 386, 697, 740
BciVI GTATCC 2 cut(s) 946, 953
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 3 cut(s) 209, 281, 980
BfmI CTRYAG 1 cut(s) 555
BfuI GTATCC 2 cut(s) 946, 953
BlnI CCTAGG 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 866
Bme1390I CCNGG 3 cut(s) 386, 697, 740
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 932
BmgBI CACGTC 2 cut(s) 9, 428
BmgT120I GGNCC 2 cut(s) 49, 254
BmiI GGNNCC 4 cut(s) 115, 256, 756, 1182
BmrFI CCNGG 3 cut(s) 386, 697, 740
BmsI GCATC 2 cut(s) 337, 571
BpiI GAAGAC 2 cut(s) 169, 1055
BpmI CTGGAG 2 cut(s) 741, 1105
Bpu10I CCTNAGC 1 cut(s) 667
BpuEI CTTGAG 2 cut(s) 500, 900
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 5 cut(s) 280, 304, 385, 739, 1054
BsaWI WCCGGW 2 cut(s) 137, 814
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 90
Bse118I RCCGGY 1 cut(s) 748
Bse1I ACTGG 1 cut(s) 658
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 3 cut(s) 386, 697, 740
BseDI CCNNGG 5 cut(s) 280, 304, 385, 739, 1054
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 2 cut(s) 68, 90
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 2 cut(s) 578, 681
BseNI ACTGG 1 cut(s) 658
BseRI GAGGAG 1 cut(s) 552
BseSI GKGCMC 1 cut(s) 1153
BseXI GCAGC 5 cut(s) 195, 541, 569, 1106, 1183
BseYI CCCAGC 1 cut(s) 226
BshFI GGCC 4 cut(s) 5, 189, 216, 255
BsiHKAI GWGCWC 1 cut(s) 1153
BsiHKCI CYCGRG 1 cut(s) 932
BsiSI CCGG 4 cut(s) 138, 749, 785, 815
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 68, 90
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 4 cut(s) 5, 189, 216, 255
BsoBI CYCGRG 1 cut(s) 932
Bsp1286I GDGCHC 2 cut(s) 1097, 1153
Bsp1407I TGTACA 1 cut(s) 961
Bsp143I GATC 1 cut(s) 874
BspACI CCGC 9 cut(s) 186, 246, 309, 312, 390, 594, 752, 761, 764
BspANI GGCC 4 cut(s) 5, 189, 216, 255
BspCNI CTCAG 2 cut(s) 577, 680
BspLI GGNNCC 4 cut(s) 115, 256, 756, 1182
BspMAI CTGCAG 1 cut(s) 559
BspQI GCTCTTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 748
BsrGI TGTACA 1 cut(s) 961
BsrI ACTGG 1 cut(s) 658
BssAI RCCGGY 1 cut(s) 748
BssECI CCNNGG 5 cut(s) 280, 304, 385, 739, 1054
BssMI GATC 1 cut(s) 874
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 280, 1054
Bst2UI CCWGG 3 cut(s) 386, 697, 740
Bst4CI ACNGT 2 cut(s) 71, 793
Bst6I CTCTTC 2 cut(s) 21, 532
BstACI GRCGYC 1 cut(s) 441
BstAUI TGTACA 1 cut(s) 961
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 214, 750
BstDEI CTNAG 4 cut(s) 550, 564, 667, 804
BstF5I GGATG 1 cut(s) 502
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 1 cut(s) 877
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 874
BstMWI GCNNNNNNNGC 4 cut(s) 347, 663, 758, 761
BstNI CCWGG 3 cut(s) 386, 697, 740
BstSCI CCNGG 3 cut(s) 384, 695, 738
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 1153
BstV1I GCAGC 5 cut(s) 195, 541, 569, 1106, 1183
BstV2I GAAGAC 2 cut(s) 169, 1055
BsuI GTATCC 2 cut(s) 946, 953
BsuRI GGCC 4 cut(s) 5, 189, 216, 255
BtrI CACGTC 2 cut(s) 9, 428
BtsCI GGATG 1 cut(s) 502
BtsI GCAGTG 2 cut(s) 217, 1153
BtsIMutI CAGTG 4 cut(s) 217, 572, 675, 1153
Cac8I GCNNGC 2 cut(s) 214, 750
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 748
Cfr13I GGNCC 2 cut(s) 49, 254
CseI GACGC 1 cut(s) 449
Csp6I GTAC 4 cut(s) 547, 606, 865, 962
CviAII CATG 2 cut(s) 654, 1131
CviQI GTAC 4 cut(s) 547, 606, 865, 962
DdeI CTNAG 4 cut(s) 550, 564, 667, 804
DpnI GATC 1 cut(s) 876
DpnII GATC 1 cut(s) 874
EaeI YGGCCR 2 cut(s) 3, 187
Eam1104I CTCTTC 2 cut(s) 21, 532
EarI CTCTTC 2 cut(s) 21, 532
EciI GGCGGA 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 280, 1054
Eco24I GRGCYC 1 cut(s) 1097
Eco47I GGWCC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 932
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 3 cut(s) 384, 695, 738
EcoT14I CCWWGG 2 cut(s) 280, 1054
EcoT38I GRGCYC 1 cut(s) 1097
ErhI CCWWGG 2 cut(s) 280, 1054
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 2 cut(s) 657, 1134
FaqI GGGAC 1 cut(s) 414
FatI CATG 2 cut(s) 653, 1130
FbaI TGATCA 1 cut(s) 874
FokI GGATG 1 cut(s) 509
FriOI GRGCYC 1 cut(s) 1097
FspBI CTAG 3 cut(s) 209, 281, 980
GlaI GCGC 1 cut(s) 133
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 2 cut(s) 741, 1105
HaeIII GGCC 4 cut(s) 5, 189, 216, 255
HapII CCGG 4 cut(s) 138, 749, 785, 815
HgaI GACGC 1 cut(s) 449
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 2 cut(s) 657, 1134
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 1 cut(s) 285
HpaII CCGG 4 cut(s) 138, 749, 785, 815
HphI GGTGA 1 cut(s) 829
Hpy166II GTNNAC 4 cut(s) 157, 547, 964, 1151
Hpy188I TCNGA 2 cut(s) 346, 952
Hpy188III TCNNGA 4 cut(s) 373, 578, 1045, 1084
Hpy8I GTNNAC 4 cut(s) 157, 547, 964, 1151
Hpy99I CGWCG 3 cut(s) 443, 593, 835
HpyAV CCTTC 3 cut(s) 104, 175, 442
HpyCH4III ACNGT 2 cut(s) 71, 793
HpyCH4IV ACGT 7 cut(s) 8, 128, 153, 174, 427, 508, 713
HpyCH4V TGCA 8 cut(s) 222, 350, 482, 506, 557, 1122, 1151, 1171
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 663, 758, 761
HpyF3I CTNAG 4 cut(s) 550, 564, 667, 804
HpySE526I ACGT 7 cut(s) 8, 128, 153, 174, 427, 508, 713
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 2 cut(s) 657, 1134
HspAI GCGC 1 cut(s) 132
KroI GCCGGC 1 cut(s) 748
KroNI GCCGGC 1 cut(s) 750
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 1 cut(s) 874
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 2 cut(s) 565, 760
Lsp1109I GCAGC 5 cut(s) 195, 541, 569, 1106, 1183
LweI GCATC 2 cut(s) 337, 571
MaeI CTAG 3 cut(s) 209, 281, 980
MaeII ACGT 7 cut(s) 8, 128, 153, 174, 427, 508, 713
MaeIII GTNAC 2 cut(s) 262, 671
MalI GATC 1 cut(s) 876
MboI GATC 1 cut(s) 874
MboII GAAGA 8 cut(s) 8, 169, 327, 549, 742, 995, 1027, 1060
MhlI GDGCHC 2 cut(s) 1097, 1153
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 364, 799
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 748
MroXI GAANNNNTTC 2 cut(s) 380, 734
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 186, 248, 761
MspI CCGG 4 cut(s) 138, 749, 785, 815
MspR9I CCNGG 3 cut(s) 386, 697, 740
MvaI CCWGG 3 cut(s) 386, 697, 740
MwoI GCNNNNNNNGC 4 cut(s) 347, 663, 758, 761
NaeI GCCGGC 1 cut(s) 750
NdeII GATC 1 cut(s) 874
NgoMIV GCCGGC 1 cut(s) 748
NlaIII CATG 2 cut(s) 657, 1134
NlaIV GGNNCC 4 cut(s) 115, 256, 756, 1182
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 72
PciSI GCTCTTC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 750
PdmI GAANNNNTTC 2 cut(s) 380, 734
PflFI GACNNNGTC 1 cut(s) 712
PflMI CCANNNNNTGG 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 695
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 154
Psp6I CCWGG 3 cut(s) 384, 695, 738
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 3 cut(s) 384, 695, 738
PspN4I GGNNCC 4 cut(s) 115, 256, 756, 1182
PspPI GGNCC 2 cut(s) 49, 254
PstI CTGCAG 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 4 cut(s) 548, 607, 866, 963
RsaNI GTAC 4 cut(s) 547, 606, 865, 962
RseI CAYNNNNRTG 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 532
Sau3AI GATC 1 cut(s) 874
Sau96I GGNCC 2 cut(s) 49, 254
ScaI AGTACT 1 cut(s) 866
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 3 cut(s) 386, 697, 740
SduI GDGCHC 2 cut(s) 1097, 1153
SfaNI GCATC 2 cut(s) 337, 571
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 515, 915
SmoI CTYRAG 2 cut(s) 515, 915
Sse9I AATT 2 cut(s) 364, 799
SsiI CCGC 9 cut(s) 186, 246, 309, 312, 390, 594, 752, 761, 764
SspI AATATT 1 cut(s) 685
SspMI CTAG 3 cut(s) 209, 281, 980
StyD4I CCNGG 3 cut(s) 384, 695, 738
StyI CCWWGG 2 cut(s) 280, 1054
TaaI ACNGT 2 cut(s) 71, 793
TaiI ACGT 7 cut(s) 11, 131, 156, 177, 430, 511, 716
TaqI TCGA 4 cut(s) 233, 465, 618, 833
TasI AATT 2 cut(s) 364, 799
TatI WGTACW 4 cut(s) 546, 605, 864, 961
TauI GCSGC 7 cut(s) 189, 248, 312, 315, 755, 764, 767
TscAI CASTG 4 cut(s) 224, 572, 682, 1153
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 5 cut(s) 183, 554, 557, 1119, 1171
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 769, 1119, 1145
TspRI CASTG 4 cut(s) 224, 572, 682, 1153
Tth111I GACNNNGTC 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 90
VneI GTGCAC 1 cut(s) 1149
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 799
XmaJI CCTAGG 1 cut(s) 280
XmnI GAANNNNTTC 2 cut(s) 380, 734
XspI CTAG 3 cut(s) 209, 281, 980
ZrmI AGTACT 1 cut(s) 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.