RLG00000026390

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000601
Physical Location & Seq
Forward (+)
2721041 .. 2722087
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026390

Sequence Viewer

Length: 825 bp
ATGGCTTCAATTTTAGTAGCAGCTTTGCTATCTTTAGCAACACTACTACTTCTGGCAGTTGGGTCTAATGCAGGCGGAATCGCGATTTACTGGGGCCAAAATGGAAACGAAGGCACATTAGCACAAACATGTGCCTCAGGGAACTACAAGTTTGTAAACATAGCTTTCCTTTCATCATTTGGCAATGGCCGAACCCCTACCATAAACCTTGCGGGTCACTGTGACCCGTACAGCAATGGATGCACCAAGTTCAGCTCACAAATAAAGTCGTGCCAAGCCAAAGGCATCAAGATCATACTATCTATTGGAGGTGGTACTGGAGGCTACTCTCTAGCTTCATCCAAAGATGCCCGCCAATTTGGTGCTTACTTGTGGAACAACTTCTTGGGAGGACACTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTCGACATTGAAGGAGGGAATGACCAGTACTATGATGACCTTACTAGGTACCTTTCGGCACAGAGCAAGAAGGGTGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTTAAGACGGGCCTATTTGACTATGTTTGGGTTCAATTTTACAACAACCCTCCTTGTCAGTACACTTCTGGACTCCCTGCTGCACCTCAAGCTGCTGGTAGCGGATTCATTCCTGCTGCTGCTCTCACTTCAAAAGTCCTTCCGGGTATCAAAAATTCTGCTAAATATGGTGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTTGATGGATACAGCTCCTCCATCAAGAATCATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

275

Amino Acids

28.85

Weight (kDa)

8.61

Isoelectric Point (pI)

29.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 27 - 209 3.8e-22 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 489
AccB1I GGYRCC 1 cut(s) 489
AccII CGCG 1 cut(s) 83
AciI CCGC 4 cut(s) 75, 212, 352, 684
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 736
AfaI GTAC 5 cut(s) 230, 316, 470, 491, 644
AfiI CCNNNNNNNGG 1 cut(s) 405
AflII CTTAAG 1 cut(s) 584
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 5 cut(s) 9, 405, 452, 617, 714
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 6 cut(s) 23, 164, 255, 335, 674, 801
AluI AGCT 6 cut(s) 23, 164, 255, 335, 674, 801
AoxI GGCC 4 cut(s) 94, 187, 407, 592
ApeKI GCWGC 6 cut(s) 20, 539, 662, 674, 698, 701
ApoI RAATTY 1 cut(s) 736
Asp700I GAANNNNTTC 1 cut(s) 380
Asp718I GGTACC 1 cut(s) 489
AspS9I GGNCC 3 cut(s) 94, 592, 768
AsuC2I CCSGG 1 cut(s) 726
AvaII GGWCC 1 cut(s) 768
AxyI CCTNAGG 1 cut(s) 136
BanI GGYRCC 1 cut(s) 489
BbvI GCAGC 6 cut(s) 32, 526, 649, 661, 685, 688
BccI CCATC 3 cut(s) 425, 785, 815
BceAI ACGGC 1 cut(s) 394
BciVI GTATCC 1 cut(s) 788
BcnI CCSGG 1 cut(s) 726
BfaI CTAG 3 cut(s) 332, 486, 823
BfrI CTTAAG 1 cut(s) 584
BfuI GTATCC 1 cut(s) 788
BisI GCNGC 6 cut(s) 21, 540, 663, 675, 699, 702
BlsI GCNGC 6 cut(s) 22, 541, 664, 676, 700, 703
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 726
Bme18I GGWCC 1 cut(s) 768
BmgT120I GGNCC 3 cut(s) 94, 592, 768
BmiI GGNNCC 2 cut(s) 95, 491
BmrFI CCNGG 1 cut(s) 726
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 5 cut(s) 230, 294, 337, 409, 553
BmuI ACTGGG 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 726
BsaXI ACNNNNNCTCC 6 cut(s) 408, 438, 526, 556, 788, 818
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 3 cut(s) 95, 322, 466
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 2 cut(s) 190, 241
BseGI GGATG 3 cut(s) 245, 338, 436
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMI GCAATG 2 cut(s) 190, 241
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 3 cut(s) 95, 322, 466
BseRI GAGGAG 2 cut(s) 388, 793
BseXI GCAGC 6 cut(s) 32, 526, 649, 661, 685, 688
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 4 cut(s) 96, 189, 409, 594
BshNI GGYRCC 1 cut(s) 489
BsiSI CCGG 1 cut(s) 725
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 537
BsnI GGCC 4 cut(s) 96, 189, 409, 594
Bsp143I GATC 2 cut(s) 291, 784
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 4 cut(s) 75, 212, 352, 684
BspANI GGCC 4 cut(s) 96, 189, 409, 594
BspCNI CTCAG 1 cut(s) 149
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 95, 491
BspT107I GGYRCC 1 cut(s) 489
BspTI CTTAAG 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 190, 241
BsrI ACTGG 3 cut(s) 95, 322, 466
BssMI GATC 2 cut(s) 291, 784
Bst4CI ACNGT 2 cut(s) 221, 549
Bst6I CTCTTC 1 cut(s) 406
BstAFI CTTAAG 1 cut(s) 584
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 73, 352
BstDEI CTNAG 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 245, 338, 436
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 2 cut(s) 294, 787
BstMBI GATC 2 cut(s) 291, 784
BstMWI GCNNNNNNNGC 2 cut(s) 240, 671
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 724
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 6 cut(s) 32, 526, 649, 661, 685, 688
Bsu36I CCTNAGG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 4 cut(s) 96, 189, 409, 594
BtsCI GGATG 3 cut(s) 245, 338, 436
BtsIMutI CAGTG 2 cut(s) 217, 554
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 73, 352
Cfr13I GGNCC 3 cut(s) 94, 592, 768
Csp6I GTAC 5 cut(s) 229, 315, 469, 490, 643
CspCI CAANNNNNGTGG 2 cut(s) 496, 531
CviAII CATG 3 cut(s) 129, 760, 818
CviQI GTAC 5 cut(s) 229, 315, 469, 490, 643
DdeI CTNAG 1 cut(s) 136
DpnI GATC 2 cut(s) 293, 786
DpnII GATC 2 cut(s) 291, 784
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
EciI GGCGGA 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 768
Eco81I CCTNAGG 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 403
FaeI CATG 3 cut(s) 132, 763, 821
FaqI GGGAC 1 cut(s) 537
FatI CATG 3 cut(s) 128, 759, 817
FauI CCCGC 2 cut(s) 205, 359
Fnu4HI GCNGC 6 cut(s) 21, 540, 663, 675, 699, 702
FokI GGATG 3 cut(s) 252, 325, 443
Fsp4HI GCNGC 6 cut(s) 21, 540, 663, 675, 699, 702
FspBI CTAG 3 cut(s) 332, 486, 823
GluI GCNGC 6 cut(s) 21, 540, 663, 675, 699, 702
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 4 cut(s) 96, 189, 409, 594
HapII CCGG 1 cut(s) 725
Hin1II CATG 3 cut(s) 132, 763, 821
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 4 cut(s) 78, 654, 687, 814
HpaII CCGG 1 cut(s) 725
Hpy166II GTNNAC 4 cut(s) 157, 439, 529, 645
Hpy188III TCNNGA 6 cut(s) 82, 289, 560, 651, 788, 811
Hpy8I GTNNAC 4 cut(s) 157, 439, 529, 645
HpyAV CCTTC 4 cut(s) 104, 446, 505, 731
HpyCH4III ACNGT 2 cut(s) 221, 549
HpyCH4V TGCA 4 cut(s) 71, 243, 581, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 671
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 3 cut(s) 132, 763, 821
KpnI GGTACC 1 cut(s) 493
Kzo9I GATC 2 cut(s) 291, 784
LmnI GCTCC 2 cut(s) 547, 806
Lsp1109I GCAGC 6 cut(s) 32, 526, 649, 661, 685, 688
LweI GCATC 5 cut(s) 230, 294, 337, 409, 553
MaeI CTAG 3 cut(s) 332, 486, 823
MaeIII GTNAC 2 cut(s) 215, 221
MalI GATC 2 cut(s) 293, 786
MboI GATC 2 cut(s) 291, 784
MboII GAAGA 1 cut(s) 393
MluCI AATT 4 cut(s) 9, 356, 617, 736
MlyI GAGTC 1 cut(s) 648
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 9 cut(s) 145, 302, 314, 383, 409, 449, 642, 678, 814
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 1 cut(s) 127
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 240, 671
NciI CCSGG 1 cut(s) 726
NdeII GATC 2 cut(s) 291, 784
NlaIII CATG 3 cut(s) 132, 763, 821
NlaIV GGNNCC 2 cut(s) 95, 491
NmuCI GTSAC 2 cut(s) 215, 221
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 132
PciI ACATGT 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 78, 687, 814
PkrI GCNGC 6 cut(s) 22, 541, 664, 676, 700, 703
PleI GAGTC 1 cut(s) 648
PpsI GAGTC 1 cut(s) 648
PscI ACATGT 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 95, 491
PspPI GGNCC 3 cut(s) 94, 592, 768
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 5 cut(s) 230, 316, 470, 491, 644
RsaNI GTAC 5 cut(s) 229, 315, 469, 490, 643
RseI CAYNNNNRTG 1 cut(s) 127
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 6 cut(s) 21, 540, 663, 675, 699, 702
Sau3AI GATC 2 cut(s) 291, 784
Sau96I GGNCC 3 cut(s) 94, 592, 768
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 1 cut(s) 648
ScrFI CCNGG 1 cut(s) 726
SfaNI GCATC 5 cut(s) 230, 294, 337, 409, 553
SinI GGWCC 1 cut(s) 768
SmiMI CAYNNNNRTG 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 584, 669
SmoI CTYRAG 2 cut(s) 584, 669
Sse9I AATT 4 cut(s) 9, 356, 617, 736
SsiI CCGC 4 cut(s) 75, 212, 352, 684
SspMI CTAG 3 cut(s) 332, 486, 823
StyD4I CCNGG 1 cut(s) 724
TaaI ACNGT 2 cut(s) 221, 549
TaqI TCGA 1 cut(s) 444
TasI AATT 4 cut(s) 9, 356, 617, 736
TatI WGTACW 2 cut(s) 468, 642
TfiI GAWTC 3 cut(s) 78, 687, 814
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 2 cut(s) 224, 554
TseFI GTSAC 2 cut(s) 215, 221
TseI GCWGC 6 cut(s) 20, 539, 662, 674, 698, 701
Tsp45I GTSAC 2 cut(s) 215, 221
TspDTI ATGAA 3 cut(s) 162, 327, 679
TspRI CASTG 2 cut(s) 224, 554
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 768
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 1 cut(s) 736
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 3 cut(s) 332, 486, 823
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.