Rorug01G0407900

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
51414971 .. 51417182
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0407900.1

Sequence Viewer

Length: 528 bp
ATGTCACAAGCAGTCTTAACCAAAACAAAACAAAAGTGGTGGGTGAAGGTTTTATTGTTTTTTGGGGAGAGGCAAAGCATGGAGTCTGGATTTTCTTCTTCTTCAATGGGTTTCATGGAAAATGTGGAGCAACCTCATGTTTTGGCTGTGGATGACAGTGATATTGATCGGAAACTTATCGAAAAGCTGCTCAAGAATTTCTCTTGCAAAGTGACTACTGCAGAAAATGGGGCAAGAGCATTGGAGTTTCTAGGCTTGGGAGATCATCCAAACCATTGCAATATCTCAAAGGTAAATCTGGTAATTACAGATTATTGCATGCCAGGAATGACAGGATATGAACTGCTTAAGAAAATCAAGGAATCATCAGTTATGAAGGAGGTTCCAGTGGTGATTATGTCATCTGAAAATATACCGAATCGGATTAGCAAGTGCTTGGAGGAAGGAGCTCAGATGTTCATGCTAAAACCGATCAAACAGTCGGACATTAAGCAATTGAGATGTCATCTGATGAATTGCAGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

175

Amino Acids

19.84

Weight (kDa)

8.5

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 47 - 165 1.2e-21 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 196
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 3 cut(s) 187, 449, 525
AluI AGCT 3 cut(s) 187, 449, 525
Alw21I GWGCWC 1 cut(s) 451
AlwNI CAGNNNCTG 1 cut(s) 525
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 55, 403
BanII GRGCYC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 324
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 1 cut(s) 324
BseGI GGATG 2 cut(s) 157, 265
BseJI GATNNNNATC 1 cut(s) 165
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 3 cut(s) 166, 262, 471
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 386
BssMI GATC 3 cut(s) 166, 262, 471
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 158, 480
BstAFI CTTAAG 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 157, 265
BstKTI GATC 3 cut(s) 169, 265, 474
BstMBI GATC 3 cut(s) 166, 262, 471
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 157, 265
BtsIMutI CAGTG 2 cut(s) 163, 393
Cac8I GCNNGC 1 cut(s) 320
CaiI CAGNNNCTG 1 cut(s) 525
CspCI CAANNNNNGTGG 2 cut(s) 20, 55
CviAII CATG 5 cut(s) 79, 115, 137, 319, 460
CviJI RGCY 5 cut(s) 146, 187, 255, 449, 525
CviKI_1 RGCY 5 cut(s) 146, 187, 255, 449, 525
DdeI CTNAG 1 cut(s) 450
DpnI GATC 3 cut(s) 168, 264, 473
DpnII GATC 3 cut(s) 166, 262, 471
Ecl136II GAGCTC 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 451
Eco53kI GAGCTC 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 451
FaeI CATG 5 cut(s) 82, 118, 140, 322, 463
FaiI YATR 9 cut(s) 80, 116, 138, 320, 339, 374, 398, 413, 461
FatI CATG 5 cut(s) 78, 114, 136, 318, 459
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 2 cut(s) 164, 252
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 188
Hin1II CATG 5 cut(s) 82, 118, 140, 322, 463
HinfI GANTC 3 cut(s) 83, 362, 418
HphI GGTGA 2 cut(s) 55, 403
Hpy188I TCNGA 6 cut(s) 171, 406, 423, 453, 484, 510
Hpy188III TCNNGA 2 cut(s) 87, 193
HpyAV CCTTC 3 cut(s) 40, 370, 437
HpyCH4III ACNGT 2 cut(s) 158, 480
HpyCH4V TGCA 5 cut(s) 207, 221, 279, 318, 519
HpyF3I CTNAG 1 cut(s) 450
Hsp92II CATG 5 cut(s) 82, 118, 140, 322, 463
Kzo9I GATC 3 cut(s) 166, 262, 471
LmnI GCTCC 3 cut(s) 127, 446, 522
LpnPI CCDG 7 cut(s) 72, 284, 309, 318, 336, 399, 505
Lsp1109I GCAGC 1 cut(s) 174
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 3, 211
MalI GATC 3 cut(s) 168, 264, 473
MboI GATC 3 cut(s) 166, 262, 471
MboII GAAGA 3 cut(s) 87, 90, 93
MfeI CAATTG 1 cut(s) 494
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 4 cut(s) 196, 303, 494, 514
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 4 cut(s) 63, 144, 373, 433
MseI TTAA 3 cut(s) 17, 348, 489
MspCI CTTAAG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 324
NdeII GATC 3 cut(s) 166, 262, 471
NlaIII CATG 5 cut(s) 82, 118, 140, 322, 463
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 3, 211
NspI RCATGY 1 cut(s) 322
PaeI GCATGC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 362, 418
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 384
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 451
SaqAI TTAA 3 cut(s) 17, 348, 489
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 3 cut(s) 166, 262, 471
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 451
SetI ASST 7 cut(s) 51, 136, 189, 294, 384, 451, 527
SfcI CTRYAG 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 191, 347
SmoI CTYRAG 2 cut(s) 191, 347
SphI GCATGC 1 cut(s) 322
Sse9I AATT 4 cut(s) 196, 303, 494, 514
SspMI CTAG 1 cut(s) 251
SstI GAGCTC 1 cut(s) 451
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 2 cut(s) 158, 480
TaqI TCGA 1 cut(s) 180
TasI AATT 4 cut(s) 196, 303, 494, 514
TfiI GAWTC 2 cut(s) 362, 418
Tru1I TTAA 3 cut(s) 17, 348, 489
Tru9I TTAA 3 cut(s) 17, 348, 489
TscAI CASTG 2 cut(s) 163, 393
TseFI GTSAC 2 cut(s) 3, 211
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 2 cut(s) 3, 211
TspDTI ATGAA 5 cut(s) 103, 354, 389, 448, 527
TspRI CASTG 2 cut(s) 163, 393
Vha464I CTTAAG 1 cut(s) 347
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 322
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.