Rh1BG394900

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000601
Physical Location & Seq
Reverse (-)
51982460 .. 51983943
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG394900.1

Sequence Viewer

Length: 915 bp
ATGGCCACGTCTCCTCTTCTCTCACTCCTTGTCCTAATCTCATTTCTGGTCCTAATCCAACCCTCTCACGGTGGTGGCATAGCCATCTACTGGGGCCAAAACGGGAACGAAGGTACCCTAAAACAAACCTGCGCCACCGGAAAATACAAGTACGTGAACATAGCCTTCCTCAACGTCTTCGGCAGCGGCCAAACACCACAAATCAACCTAGCAGGCCACTGCAACCCAGTCTCAAATGGTTGCGCCGCCGTCGGCCCCGAAGTCACATTCTGTCAGAGCCTAGGAGTCAAGGTGTTCCTCTCCCTCGGCGGTGGAATCGGAAACTACTCTCTATCTTCTGTTTCTGACGCAAAAGATGTAGCCAATTATCTATGGAACAGTTTCCTGGGGGGAAAAGGAAACGGCAGAGACAAGTCAACTACTACACGTCCCTTCGGCGACGCCGTTTTGGATGGGATAGATTTCGACATAGAGCAAGGTGCAAATCCATATTGGGATGACCTTGCACGTTATCTCAAGGCGTATAGCAAACCAAGAAGAGCTGTGTACTTAGCTGCAGCTCCTCAGTGTCCATTTCCCGATGCGTTCGTCGGCGGTGCGATTAGTACAGGGCTTTTCGACTATGTTTGGGTTCAGTTCTACAACAATCCTCCATGCCAGTATAGCTCAGGTAACACTGACAATATTCTAAACTCGTGGAATAAATGGACTACGTCTATACAAGCAGGGAAGATATTCCTGGGGTTGCCGGCGGCTCCAGCGGCGGCTGGAAGTGGGTTCATTCCGGCTACGGTGCTGAATTCTAAGATACTTCCGGTGATAAAGAAGTCGTCGAAGTATGGTGGAGTGATGTTGTGGTCAAAGTATTATGATGATCAAAGTGGTTATAGTTCCTCCATTATCAAAAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

304

Amino Acids

32.44

Weight (kDa)

8.76

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 27 - 252 7.4e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 137
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 90
AciI CCGC 7 cut(s) 186, 246, 309, 594, 752, 761, 764
AcoI YGGCCR 2 cut(s) 3, 187
AcsI RAATTY 1 cut(s) 799
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 4 cut(s) 115, 152, 548, 607
AfiI CCNNNNNNNGG 2 cut(s) 68, 90
AflIII ACRYGT 1 cut(s) 425
AjiI CACGTC 2 cut(s) 9, 428
AjnI CCWGG 2 cut(s) 384, 738
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 4 cut(s) 542, 554, 560, 666
AluI AGCT 4 cut(s) 542, 554, 560, 666
Alw26I GTCTC 3 cut(s) 15, 235, 402
AoxI GGCC 5 cut(s) 3, 94, 187, 214, 253
ApeKI GCWGC 3 cut(s) 183, 554, 557
ApoI RAATTY 1 cut(s) 799
Asp700I GAANNNNTTC 2 cut(s) 380, 734
Asp718I GGTACC 1 cut(s) 113
AspA2I CCTAGG 1 cut(s) 280
AspLEI GCGC 2 cut(s) 134, 245
AspS9I GGNCC 3 cut(s) 49, 94, 254
AsuHPI GGTGA 1 cut(s) 829
AvaII GGWCC 1 cut(s) 49
AvrII CCTAGG 1 cut(s) 280
BaeI ACNNNNGTAYC 2 cut(s) 97, 130
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 113
BauI CACGAG 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 3 cut(s) 195, 541, 569
BccI CCATC 2 cut(s) 92, 446
BceAI ACGGC 3 cut(s) 233, 418, 428
BciT130I CCWGG 2 cut(s) 386, 740
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 3 cut(s) 15, 235, 402
BfaI CTAG 2 cut(s) 209, 281
BfmI CTRYAG 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 8 cut(s) 184, 187, 246, 555, 558, 753, 762, 765
BlnI CCTAGG 1 cut(s) 280
BlsI GCNGC 8 cut(s) 185, 188, 247, 556, 559, 754, 763, 766
Bme1390I CCNGG 2 cut(s) 386, 740
Bme18I GGWCC 1 cut(s) 49
BmgBI CACGTC 2 cut(s) 9, 428
BmgT120I GGNCC 3 cut(s) 49, 94, 254
BmiI GGNNCC 4 cut(s) 95, 115, 256, 756
BmrFI CCNGG 2 cut(s) 386, 740
BmrI ACTGGG 2 cut(s) 100, 221
BmsI GCATC 1 cut(s) 571
BmuI ACTGGG 2 cut(s) 100, 221
BpiI GAAGAC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 741
Bpu10I CCTNAGC 1 cut(s) 667
BpuEI CTTGAG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 4 cut(s) 280, 304, 385, 739
BsaWI WCCGGW 2 cut(s) 137, 814
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 90
Bse118I RCCGGY 1 cut(s) 748
Bse1I ACTGG 3 cut(s) 95, 227, 658
BseBI CCWGG 2 cut(s) 386, 740
BseDI CCNNGG 4 cut(s) 280, 304, 385, 739
BseGI GGATG 2 cut(s) 457, 502
BseLI CCNNNNNNNGG 2 cut(s) 68, 90
BseMII CTCAG 2 cut(s) 578, 681
BseNI ACTGG 3 cut(s) 95, 227, 658
BseRI GAGGAG 1 cut(s) 552
BseXI GCAGC 3 cut(s) 195, 541, 569
BshFI GGCC 5 cut(s) 5, 96, 189, 216, 255
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 4 cut(s) 138, 749, 785, 815
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 68, 90
BsmAI GTCTC 3 cut(s) 15, 235, 402
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 5 cut(s) 5, 96, 189, 216, 255
Bsp143I GATC 1 cut(s) 874
BspACI CCGC 7 cut(s) 186, 246, 309, 594, 752, 761, 764
BspANI GGCC 5 cut(s) 5, 96, 189, 216, 255
BspCNI CTCAG 2 cut(s) 577, 680
BspLI GGNNCC 4 cut(s) 95, 115, 256, 756
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 532
BspT107I GGYRCC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 748
BsrI ACTGG 3 cut(s) 95, 227, 658
BssAI RCCGGY 1 cut(s) 748
BssECI CCNNGG 4 cut(s) 280, 304, 385, 739
BssMI GATC 1 cut(s) 874
BssNI GRCGYC 1 cut(s) 441
BssSI CACGAG 1 cut(s) 694
BssT1I CCWWGG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 694
Bst2UI CCWGG 2 cut(s) 386, 740
Bst4CI ACNGT 3 cut(s) 71, 380, 793
Bst6I CTCTTC 2 cut(s) 21, 532
BstACI GRCGYC 1 cut(s) 441
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 214, 750
BstDEI CTNAG 4 cut(s) 550, 564, 667, 804
BstF5I GGATG 2 cut(s) 457, 502
BstHHI GCGC 2 cut(s) 134, 245
BstKTI GATC 1 cut(s) 877
BstMAI GTCTC 3 cut(s) 15, 235, 402
BstMBI GATC 1 cut(s) 874
BstMWI GCNNNNNNNGC 3 cut(s) 663, 758, 761
BstNI CCWGG 2 cut(s) 386, 740
BstSCI CCNGG 2 cut(s) 384, 738
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 3 cut(s) 195, 541, 569
BstV2I GAAGAC 1 cut(s) 169
BsuRI GGCC 5 cut(s) 5, 96, 189, 216, 255
BtrI CACGTC 2 cut(s) 9, 428
BtsCI GGATG 2 cut(s) 457, 502
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 3 cut(s) 217, 572, 675
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 214, 750
CfoI GCGC 2 cut(s) 134, 245
Cfr10I RCCGGY 1 cut(s) 748
Cfr13I GGNCC 3 cut(s) 49, 94, 254
CseI GACGC 2 cut(s) 356, 449
Csp6I GTAC 4 cut(s) 114, 151, 547, 606
CviAII CATG 1 cut(s) 654
CviQI GTAC 4 cut(s) 114, 151, 547, 606
DdeI CTNAG 4 cut(s) 550, 564, 667, 804
DpnI GATC 1 cut(s) 876
DpnII GATC 1 cut(s) 874
EaeI YGGCCR 2 cut(s) 3, 187
Eam1104I CTCTTC 2 cut(s) 21, 532
EarI CTCTTC 2 cut(s) 21, 532
Eco130I CCWWGG 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 2 cut(s) 384, 738
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 1 cut(s) 657
FaqI GGGAC 1 cut(s) 414
FatI CATG 1 cut(s) 653
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 8 cut(s) 184, 187, 246, 555, 558, 753, 762, 765
FokI GGATG 2 cut(s) 464, 509
Fsp4HI GCNGC 8 cut(s) 184, 187, 246, 555, 558, 753, 762, 765
FspBI CTAG 2 cut(s) 209, 281
GlaI GCGC 2 cut(s) 133, 244
GluI GCNGC 8 cut(s) 184, 187, 246, 555, 558, 753, 762, 765
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 5 cut(s) 5, 96, 189, 216, 255
HapII CCGG 4 cut(s) 138, 749, 785, 815
HgaI GACGC 2 cut(s) 356, 449
HhaI GCGC 2 cut(s) 134, 245
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 1 cut(s) 657
Hin6I GCGC 2 cut(s) 132, 243
HinP1I GCGC 2 cut(s) 132, 243
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 2 cut(s) 285, 315
HpaII CCGG 4 cut(s) 138, 749, 785, 815
HphI GGTGA 1 cut(s) 829
Hpy166II GTNNAC 3 cut(s) 157, 417, 547
Hpy188I TCNGA 3 cut(s) 276, 320, 346
Hpy188III TCNNGA 1 cut(s) 578
Hpy8I GTNNAC 3 cut(s) 157, 417, 547
Hpy99I CGWCG 4 cut(s) 254, 443, 593, 835
HpyAV CCTTC 3 cut(s) 104, 175, 442
HpyCH4III ACNGT 3 cut(s) 71, 380, 793
HpyCH4IV ACGT 6 cut(s) 8, 153, 174, 427, 508, 713
HpyCH4V TGCA 4 cut(s) 222, 482, 506, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 663, 758, 761
HpyF3I CTNAG 4 cut(s) 550, 564, 667, 804
HpySE526I ACGT 6 cut(s) 8, 153, 174, 427, 508, 713
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 1 cut(s) 657
HspAI GCGC 2 cut(s) 132, 243
KpnI GGTACC 1 cut(s) 117
KroI GCCGGC 1 cut(s) 748
KroNI GCCGGC 1 cut(s) 750
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 1 cut(s) 874
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 2 cut(s) 565, 760
Lsp1109I GCAGC 3 cut(s) 195, 541, 569
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 209, 281
MaeII ACGT 6 cut(s) 8, 153, 174, 427, 508, 713
MaeIII GTNAC 2 cut(s) 262, 671
MalI GATC 1 cut(s) 876
MboI GATC 1 cut(s) 874
MboII GAAGA 5 cut(s) 8, 169, 327, 549, 742
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 364, 799
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 8 cut(s) 24, 73, 179, 308, 314, 573, 660, 904
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 748
MroXI GAANNNNTTC 2 cut(s) 380, 734
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 186, 761
MspI CCGG 4 cut(s) 138, 749, 785, 815
MspR9I CCNGG 2 cut(s) 386, 740
MvaI CCWGG 2 cut(s) 386, 740
MwoI GCNNNNNNNGC 3 cut(s) 663, 758, 761
NaeI GCCGGC 1 cut(s) 750
NdeII GATC 1 cut(s) 874
NgoMIV GCCGGC 1 cut(s) 748
NlaIII CATG 1 cut(s) 657
NlaIV GGNNCC 4 cut(s) 95, 115, 256, 756
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 72
PciSI GCTCTTC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 750
PdmI GAANNNNTTC 2 cut(s) 380, 734
PfeI GAWTC 1 cut(s) 315
PflFI GACNNNGTC 1 cut(s) 712
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 8 cut(s) 185, 188, 247, 556, 559, 754, 763, 766
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 384, 738
PspGI CCWGG 2 cut(s) 384, 738
PspN4I GGNNCC 4 cut(s) 95, 115, 256, 756
PspPI GGNCC 3 cut(s) 49, 94, 254
PstI CTGCAG 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 4 cut(s) 115, 152, 548, 607
RsaNI GTAC 4 cut(s) 114, 151, 547, 606
RseI CAYNNNNRTG 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 532
SatI GCNGC 8 cut(s) 184, 187, 246, 555, 558, 753, 762, 765
Sau3AI GATC 1 cut(s) 874
Sau96I GGNCC 3 cut(s) 49, 94, 254
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 2 cut(s) 386, 740
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 2 cut(s) 364, 799
SsiI CCGC 7 cut(s) 186, 246, 309, 594, 752, 761, 764
SspI AATATT 1 cut(s) 685
SspMI CTAG 2 cut(s) 209, 281
StyD4I CCNGG 2 cut(s) 384, 738
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 3 cut(s) 71, 380, 793
TaiI ACGT 6 cut(s) 11, 156, 177, 430, 511, 716
TaqI TCGA 3 cut(s) 465, 618, 833
TasI AATT 2 cut(s) 364, 799
TatI WGTACW 2 cut(s) 546, 605
TauI GCSGC 5 cut(s) 189, 248, 755, 764, 767
TfiI GAWTC 1 cut(s) 315
TscAI CASTG 3 cut(s) 224, 572, 682
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 3 cut(s) 183, 554, 557
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 769
TspRI CASTG 3 cut(s) 224, 572, 682
Tth111I GACNNNGTC 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 799
XmaJI CCTAGG 1 cut(s) 280
XmnI GAANNNNTTC 2 cut(s) 380, 734
XspI CTAG 2 cut(s) 209, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.