Rh1AG438400

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000601
Physical Location & Seq
Reverse (-)
66183830 .. 66184744
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG438400.1

Sequence Viewer

Length: 915 bp
ATGGCCGCGTCTCCTCTTCTCTCACTCCTTGTCCTAATCTCATTTCTGGTCCTAATCCAACCCTCTCACGGTGGTGGCATAGCCATCTATTGGGGGCAAAACGGGAACGAAGGAACCCTAAAGCAAACGTGCGCCACCGGAAAATACAAGTACGTGAACATAGCCTTCCTCAACGTCTTCGGCAGCGGCCAAACACCACAAATCAACCTAGCAGGTCACTGCAACCCAGCCTCGAATGGTTGCGCCGCCGTCGGCCCTGAAGTCACATTCTGTCAGAGCCTAGGAGTCAAGGTGTTCCTCTCCCTTGGCGGCGGCATCGGAAACTACTCTCTATCTTCTGCTTCTGACGCAAAAGATGTAGCCAATTATCTATGGAACAGTTTCCTGGGGGGAAAAGGAAACGGCAGAGACAAGTCAACTACTACACGTCCCTTCGGCGACGCCGTTTTGGATGGGATAGATTTCGACATAGAGCAAGGTGCAAATCCATATTGGGATGACCTTGCACGTTATCTCAAGGCGTATAGCAGACCAAGAAGAGCTGTGTACTTGGCTGCAGCTCCTCAGTGTCCATTTCCCGACGCGTTCGTCGGTGGTGCGATTAGTACAGGGCTTTTCGACTATGTTTGGGTTCAGTTCTACAACAATGCTCCATGCCAGTATAGCTCAGGAAACACTGGCAATATTTTGAACTCGTGGAATAAATGGACTACGTCTATACAAGCAGGGAAGATATTCTTGGGATTGCCGGCGGCTCCAGCGGCTGCTGGAAGCGGGTTCATTCCGGCTACGGTGCTGAATTCTGAGATACTTCCGGTGATAAAGAAGTCGTCGAAGTATGGTGGCGTGATGTTGTGGTCAAAGTATTATGACGATCAAAGTGGTTATAGTTCCTCCATTATTAAAAGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

304

Amino Acids

32.27

Weight (kDa)

8.62

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 27 - 252 2.2e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
Acc36I ACCTGC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 90
AccII CGCG 2 cut(s) 8, 584
AciI CCGC 8 cut(s) 6, 186, 246, 309, 312, 752, 761, 774
AcoI YGGCCR 2 cut(s) 3, 187
AcsI RAATTY 1 cut(s) 799
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 3 cut(s) 152, 548, 607
AfiI CCNNNNNNNGG 2 cut(s) 68, 90
AflIII ACRYGT 2 cut(s) 425, 582
AgsI TTSAA 1 cut(s) 691
AjiI CACGTC 1 cut(s) 428
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 3 cut(s) 542, 560, 666
AluI AGCT 3 cut(s) 542, 560, 666
Alw26I GTCTC 2 cut(s) 15, 402
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 3 cut(s) 3, 187, 253
ApeKI GCWGC 4 cut(s) 183, 554, 557, 764
ApoI RAATTY 1 cut(s) 799
Asp700I GAANNNNTTC 2 cut(s) 380, 734
AspA2I CCTAGG 1 cut(s) 280
AspLEI GCGC 2 cut(s) 134, 245
AspS9I GGNCC 2 cut(s) 49, 254
AsuHPI GGTGA 1 cut(s) 829
AvaII GGWCC 1 cut(s) 49
AvrII CCTAGG 1 cut(s) 280
BauI CACGAG 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 4 cut(s) 195, 541, 569, 751
BccI CCATC 2 cut(s) 92, 446
BceAI ACGGC 3 cut(s) 233, 418, 428
BciT130I CCWGG 1 cut(s) 386
BcoDI GTCTC 2 cut(s) 15, 402
BfaI CTAG 2 cut(s) 209, 281
BfmI CTRYAG 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 203
BlnI CCTAGG 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 49, 254
BmiI GGNNCC 2 cut(s) 115, 756
BmrFI CCNGG 1 cut(s) 386
BmsI GCATC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 741
Bpu10I CCTNAGC 1 cut(s) 667
BpuEI CTTGAG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 3 cut(s) 280, 304, 385
BsaWI WCCGGW 2 cut(s) 137, 814
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 90
Bse118I RCCGGY 1 cut(s) 748
Bse1I ACTGG 2 cut(s) 658, 682
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 3 cut(s) 280, 304, 385
BseGI GGATG 2 cut(s) 457, 502
BseLI CCNNNNNNNGG 2 cut(s) 68, 90
BseMII CTCAG 3 cut(s) 578, 681, 795
BseNI ACTGG 2 cut(s) 658, 682
BseRI GAGGAG 1 cut(s) 552
BseXI GCAGC 4 cut(s) 195, 541, 569, 751
BseYI CCCAGC 1 cut(s) 226
Bsh1236I CGCG 2 cut(s) 8, 584
BshFI GGCC 3 cut(s) 5, 189, 255
BsiSI CCGG 4 cut(s) 138, 749, 785, 815
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 68, 90
BsmAI GTCTC 2 cut(s) 15, 402
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 3 cut(s) 5, 189, 255
Bsp143I GATC 1 cut(s) 874
BspACI CCGC 8 cut(s) 6, 186, 246, 309, 312, 752, 761, 774
BspANI GGCC 3 cut(s) 5, 189, 255
BspCNI CTCAG 3 cut(s) 577, 680, 796
BspFNI CGCG 2 cut(s) 8, 584
BspLI GGNNCC 2 cut(s) 115, 756
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 532
BsrFI RCCGGY 1 cut(s) 748
BsrI ACTGG 2 cut(s) 658, 682
BssAI RCCGGY 1 cut(s) 748
BssECI CCNNGG 3 cut(s) 280, 304, 385
BssMI GATC 1 cut(s) 874
BssNI GRCGYC 1 cut(s) 441
BssSI CACGAG 1 cut(s) 694
BssT1I CCWWGG 2 cut(s) 280, 304
Bst2BI CACGAG 1 cut(s) 694
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 3 cut(s) 71, 380, 793
Bst6I CTCTTC 2 cut(s) 21, 532
BstACI GRCGYC 1 cut(s) 441
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 3 cut(s) 564, 667, 804
BstF5I GGATG 2 cut(s) 457, 502
BstFNI CGCG 2 cut(s) 8, 584
BstHHI GCGC 2 cut(s) 134, 245
BstKTI GATC 1 cut(s) 877
BstMAI GTCTC 2 cut(s) 15, 402
BstMBI GATC 1 cut(s) 874
BstMWI GCNNNNNNNGC 4 cut(s) 347, 663, 758, 761
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 2 cut(s) 8, 584
BstV1I GCAGC 4 cut(s) 195, 541, 569, 751
BstV2I GAAGAC 1 cut(s) 169
BsuRI GGCC 3 cut(s) 5, 189, 255
BtrI CACGTC 1 cut(s) 428
BtsCI GGATG 2 cut(s) 457, 502
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 3 cut(s) 217, 572, 675
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 750
CaiI CAGNNNCTG 1 cut(s) 764
CfoI GCGC 2 cut(s) 134, 245
Cfr10I RCCGGY 1 cut(s) 748
Cfr13I GGNCC 2 cut(s) 49, 254
CseI GACGC 3 cut(s) 356, 449, 590
Csp6I GTAC 3 cut(s) 151, 547, 606
CviAII CATG 1 cut(s) 654
CviQI GTAC 3 cut(s) 151, 547, 606
DdeI CTNAG 3 cut(s) 564, 667, 804
DpnI GATC 1 cut(s) 876
DpnII GATC 1 cut(s) 874
DrdI GACNNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 587
EaeI YGGCCR 2 cut(s) 3, 187
Eam1104I CTCTTC 2 cut(s) 21, 532
EarI CTCTTC 2 cut(s) 21, 532
Eco130I CCWWGG 2 cut(s) 280, 304
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 2 cut(s) 280, 304
ErhI CCWWGG 2 cut(s) 280, 304
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 1 cut(s) 657
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 1 cut(s) 414
FatI CATG 1 cut(s) 653
FauI CCCGC 1 cut(s) 767
FokI GGATG 2 cut(s) 464, 509
FspBI CTAG 2 cut(s) 209, 281
GlaI GCGC 2 cut(s) 133, 244
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 3 cut(s) 5, 189, 255
HapII CCGG 4 cut(s) 138, 749, 785, 815
HgaI GACGC 3 cut(s) 356, 449, 590
HhaI GCGC 2 cut(s) 134, 245
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 1 cut(s) 657
Hin6I GCGC 2 cut(s) 132, 243
HinP1I GCGC 2 cut(s) 132, 243
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 1 cut(s) 285
HpaII CCGG 4 cut(s) 138, 749, 785, 815
HphI GGTGA 1 cut(s) 829
Hpy166II GTNNAC 3 cut(s) 157, 417, 547
Hpy188I TCNGA 4 cut(s) 276, 320, 346, 805
Hpy188III TCNNGA 2 cut(s) 578, 669
Hpy8I GTNNAC 3 cut(s) 157, 417, 547
Hpy99I CGWCG 5 cut(s) 254, 443, 584, 593, 835
HpyAV CCTTC 3 cut(s) 104, 175, 442
HpyCH4III ACNGT 3 cut(s) 71, 380, 793
HpyCH4IV ACGT 6 cut(s) 128, 153, 174, 427, 508, 713
HpyCH4V TGCA 4 cut(s) 222, 482, 506, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 663, 758, 761
HpyF3I CTNAG 3 cut(s) 564, 667, 804
HpySE526I ACGT 6 cut(s) 128, 153, 174, 427, 508, 713
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 1 cut(s) 657
HspAI GCGC 2 cut(s) 132, 243
KroI GCCGGC 1 cut(s) 748
KroNI GCCGGC 1 cut(s) 750
Kzo9I GATC 1 cut(s) 874
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 3 cut(s) 565, 655, 760
Lsp1109I GCAGC 4 cut(s) 195, 541, 569, 751
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 209, 281
MaeII ACGT 6 cut(s) 128, 153, 174, 427, 508, 713
MaeIII GTNAC 2 cut(s) 215, 262
MalI GATC 1 cut(s) 876
MboI GATC 1 cut(s) 874
MboII GAAGA 5 cut(s) 8, 169, 327, 549, 742
MluCI AATT 2 cut(s) 364, 799
MluI ACGCGT 1 cut(s) 582
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 7 cut(s) 24, 73, 179, 241, 308, 573, 904
MroNI GCCGGC 1 cut(s) 748
MroXI GAANNNNTTC 2 cut(s) 380, 734
MseI TTAA 1 cut(s) 903
MslI CAYNNNNRTG 1 cut(s) 72
MspA1I CMGCKG 2 cut(s) 186, 761
MspI CCGG 4 cut(s) 138, 749, 785, 815
MspR9I CCNGG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 2 cut(s) 8, 584
MwoI GCNNNNNNNGC 4 cut(s) 347, 663, 758, 761
NaeI GCCGGC 1 cut(s) 750
NdeII GATC 1 cut(s) 874
NgoMIV GCCGGC 1 cut(s) 748
NlaIII CATG 1 cut(s) 657
NlaIV GGNNCC 2 cut(s) 115, 756
NmuCI GTSAC 2 cut(s) 215, 262
OliI CACNNNNGTG 1 cut(s) 72
PciSI GCTCTTC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 750
PdmI GAANNNNTTC 2 cut(s) 380, 734
PflFI GACNNNGTC 1 cut(s) 712
PflMI CCANNNNNTGG 1 cut(s) 90
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 384
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 115, 756
PspPI GGNCC 2 cut(s) 49, 254
PstI CTGCAG 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 764
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 3 cut(s) 152, 548, 607
RsaNI GTAC 3 cut(s) 151, 547, 606
RseI CAYNNNNRTG 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 532
SaqAI TTAA 1 cut(s) 903
Sau3AI GATC 1 cut(s) 874
Sau96I GGNCC 2 cut(s) 49, 254
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 386
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 2 cut(s) 364, 799
SsiI CCGC 8 cut(s) 6, 186, 246, 309, 312, 752, 761, 774
SspI AATATT 1 cut(s) 685
SspMI CTAG 2 cut(s) 209, 281
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 2 cut(s) 280, 304
TaaI ACNGT 3 cut(s) 71, 380, 793
TaiI ACGT 6 cut(s) 131, 156, 177, 430, 511, 716
TaqI TCGA 4 cut(s) 233, 465, 618, 833
TasI AATT 2 cut(s) 364, 799
TatI WGTACW 2 cut(s) 546, 605
TauI GCSGC 7 cut(s) 8, 189, 248, 312, 315, 755, 764
Tru1I TTAA 1 cut(s) 903
Tru9I TTAA 1 cut(s) 903
TscAI CASTG 3 cut(s) 224, 572, 682
TseFI GTSAC 2 cut(s) 215, 262
TseI GCWGC 4 cut(s) 183, 554, 557, 764
Tsp45I GTSAC 2 cut(s) 215, 262
TspDTI ATGAA 1 cut(s) 769
TspRI CASTG 3 cut(s) 224, 572, 682
Tth111I GACNNNGTC 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 799
XmaJI CCTAGG 1 cut(s) 280
XmnI GAANNNNTTC 2 cut(s) 380, 734
XspI CTAG 2 cut(s) 209, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.