Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Reverse (-)

34556916 .. 34557812

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1282500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTCCAAAGTCCACAATGTCCCTAGCATTGCTCTCTTTAGTTACACTAGTTCTGGCTTTGGGGGCTAATGCCGGTGGAATCGCTATATATTGGGGTCAAAATGGGAATGAAGGCACGTTAGCGGAAACTTGTGCTACAGGGAATTACCAATTTGTAAACGTAGCTTTTCTCACCACCTTCGGCAATGGCCGCACCCCCGCCATCAACCTAGCCGGTCACTGTGACCCAACGACCGATGAATGCACCAAGTTGAGCCCAGAGATCAGGTCATGCCAAGCCAAGGGGATTAAGGTCATACTTTCCATTGGAGGAGCTTCTGGGAGCTACTCTCTAACTTCAGCAGCTGATGCAAGGCAAGTTGCAACTTACTTGTGGAACAACTTCTTGGGAGGGCATTCATCATCAAGGCCATTGGGAGCTGCAGTATTGGATGGAATTGACTTTGATATTGAGGGAGGGACTGACCAATATTGGGATGACCTTGCTAGGTACCTATCTGGATATAGCAAGAGAGGCAAGAAAGTTTACTTGACTGCTGCCCCACAATGTCCCTTTCCTGATGCTTGGATTGGAAATGCACTTAAGACAGGCCTCTTTGACAATGTTTGGGTTCAGTTCTACAACAACCCTCCCTGTCAGTACACTTCCGGCGACGTGGCCAATCTAGAGGACGCTTGGAAGCAGTGGACTTCAGCCATCCCTGCACATAAGATTTTCTTGGGGTTGCCTGCTGCTCCTCAGGCTGCCGGTAGCGGTTTTATTCCTGCTTCTGATCTCAACTCACAAGTCCTTCCGGCTATTAAAAATTCGGCTAAGTATGGAGGTGTCATGCTTTGGTCCAAATATTATGATGATCTTGATGGATACAGCTCCTCCATCAAGAGTCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

299

Amino Acids

31.69

Weight (kDa)

5.77

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	28 - 246	1.4e-20	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	492
AciI	CCGC	4 cut(s)	125, 193, 201, 756
AcoI	YGGCCR	2 cut(s)	190, 660
AcsI	RAATTY	1 cut(s)	808
AcuI	CTGAAG	2 cut(s)	324, 678
AfaI	GTAC	2 cut(s)	494, 644
AfiI	CCNNNNNNNGG	2 cut(s)	283, 475
AflII	CTTAAG	1 cut(s)	584
AhlI	ACTAGT	1 cut(s)	49
AjiI	CACGTC	1 cut(s)	658
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	6 cut(s)	167, 317, 327, 347, 422, 873
AluI	AGCT	6 cut(s)	167, 317, 327, 347, 422, 873
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	4 cut(s)	190, 410, 592, 660
ApeKI	GCWGC	5 cut(s)	344, 422, 539, 734, 746
ApoI	RAATTY	1 cut(s)	808
Asp700I	GAANNNNTTC	1 cut(s)	383
Asp718I	GGTACC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	840
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	840
AxyI	CCTNAGG	1 cut(s)	741
BalI	TGGCCA	1 cut(s)	662
BanI	GGYRCC	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	260
BbvI	GCAGC	5 cut(s)	356, 409, 526, 721, 733
BccI	CCATC	5 cut(s)	212, 428, 707, 857, 887
BciVI	GTATCC	1 cut(s)	860
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	5 cut(s)	26, 50, 212, 489, 668
BfmI	CTRYAG	2 cut(s)	138, 423
BfrI	CTTAAG	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	860
BisI	GCNGC	6 cut(s)	193, 345, 423, 540, 735, 747
BlsI	GCNGC	6 cut(s)	194, 346, 424, 541, 736, 748
Bme18I	GGWCC	1 cut(s)	840
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	840
BmiI	GGNNCC	2 cut(s)	6, 494
BmsI	GCATC	2 cut(s)	340, 553
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	4 cut(s)	411, 441, 860, 890
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 475
Bse118I	RCCGGY	3 cut(s)	74, 215, 749
Bse21I	CCTNAGG	1 cut(s)	741
Bse3DI	GCAATG	2 cut(s)	29, 193
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	3 cut(s)	439, 484, 699
BseLI	CCNNNNNNNGG	2 cut(s)	283, 475
BseMI	GCAATG	2 cut(s)	29, 193
BseMII	CTCAG	1 cut(s)	755
BseRI	GAGGAG	3 cut(s)	327, 729, 865
BseXI	GCAGC	5 cut(s)	356, 409, 526, 721, 733
BsgI	GTGCAG	1 cut(s)	690
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	192, 412, 594, 662
BshNI	GGYRCC	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	5 cut(s)	75, 216, 651, 750, 797
BslFI	GGGAC	3 cut(s)	7, 475, 537
BslI	CCNNNNNNNGG	2 cut(s)	283, 475
BsmFI	GGGAC	3 cut(s)	7, 475, 537
BsmI	GAATGC	2 cut(s)	248, 397
BsnI	GGCC	4 cut(s)	192, 412, 594, 662
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	264, 775, 856
BspACI	CCGC	4 cut(s)	125, 193, 201, 756
BspANI	GGCC	4 cut(s)	192, 412, 594, 662
BspCNI	CTCAG	1 cut(s)	754
BspLI	GGNNCC	2 cut(s)	6, 494
BspMAI	CTGCAG	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	492
BspTI	CTTAAG	1 cut(s)	584
BsrDI	GCAATG	2 cut(s)	29, 193
BsrFI	RCCGGY	3 cut(s)	74, 215, 749
BssAI	RCCGGY	3 cut(s)	74, 215, 749
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	264, 775, 856
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	224
BstAFI	CTTAAG	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	732
BstDEI	CTNAG	2 cut(s)	741, 816
BstF5I	GGATG	3 cut(s)	439, 484, 699
BstKTI	GATC	3 cut(s)	267, 778, 859
BstMBI	GATC	3 cut(s)	264, 775, 856
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 192, 350, 516, 704, 743
BstSFI	CTRYAG	2 cut(s)	138, 423
BstV1I	GCAGC	5 cut(s)	356, 409, 526, 721, 733
Bsu36I	CCTNAGG	1 cut(s)	741
BsuI	GTATCC	1 cut(s)	860
BsuRI	GGCC	4 cut(s)	192, 412, 594, 662
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	3 cut(s)	439, 484, 699
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	2 cut(s)	220, 692
Cac8I	GCNNGC	1 cut(s)	732
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr10I	RCCGGY	3 cut(s)	74, 215, 749
Cfr13I	GGNCC	1 cut(s)	840
CseI	GACGC	1 cut(s)	683
Csp6I	GTAC	2 cut(s)	493, 643
CviAII	CATG	3 cut(s)	273, 832, 890
CviQI	GTAC	2 cut(s)	493, 643
DdeI	CTNAG	2 cut(s)	741, 816
DpnI	GATC	3 cut(s)	266, 777, 858
DpnII	GATC	3 cut(s)	264, 775, 856
EaeI	YGGCCR	2 cut(s)	190, 660
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	840
Eco57I	CTGAAG	2 cut(s)	324, 678
Eco81I	CCTNAGG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	3 cut(s)	276, 835, 893
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FaqI	GGGAC	3 cut(s)	7, 475, 537
FatI	CATG	3 cut(s)	272, 831, 889
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	6 cut(s)	193, 345, 423, 540, 735, 747
FokI	GGATG	3 cut(s)	446, 491, 686
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	6 cut(s)	193, 345, 423, 540, 735, 747
FspBI	CTAG	5 cut(s)	26, 50, 212, 489, 668
GluI	GCNGC	6 cut(s)	193, 345, 423, 540, 735, 747
HaeIII	GGCC	4 cut(s)	192, 412, 594, 662
HapII	CCGG	5 cut(s)	75, 216, 651, 750, 797
HgaI	GACGC	1 cut(s)	683
Hin1II	CATG	3 cut(s)	276, 835, 893
HinfI	GANTC	2 cut(s)	81, 886
HpaII	CCGG	5 cut(s)	75, 216, 651, 750, 797
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	5 cut(s)	15, 160, 529, 645, 690
Hpy188I	TCNGA	1 cut(s)	775
Hpy188III	TCNNGA	5 cut(s)	501, 560, 668, 860, 883
Hpy8I	GTNNAC	5 cut(s)	15, 160, 529, 645, 690
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	3 cut(s)	107, 190, 803
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	3 cut(s)	119, 162, 657
HpyCH4V	TGCA	6 cut(s)	246, 353, 365, 425, 581, 707
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 192, 350, 516, 704, 743
HpyF3I	CTNAG	2 cut(s)	741, 816
HpySE526I	ACGT	3 cut(s)	119, 162, 657
Hsp92II	CATG	3 cut(s)	276, 835, 893
KpnI	GGTACC	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	264, 775, 856
LmnI	GCTCC	6 cut(s)	10, 314, 324, 419, 742, 878
Lsp1109I	GCAGC	5 cut(s)	356, 409, 526, 721, 733
LweI	GCATC	2 cut(s)	340, 553
MaeI	CTAG	5 cut(s)	26, 50, 212, 489, 668
MaeII	ACGT	3 cut(s)	119, 162, 657
MaeIII	GTNAC	3 cut(s)	43, 218, 224
MalI	GATC	3 cut(s)	266, 777, 858
MboI	GATC	3 cut(s)	264, 775, 856
MhlI	GDGCHC	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	662
MluCI	AATT	4 cut(s)	145, 152, 438, 808
MluNI	TGGCCA	1 cut(s)	662
MlyI	GAGTC	1 cut(s)	895
Mox20I	TGGCCA	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	662
MseI	TTAA	3 cut(s)	291, 585, 804
Msp20I	TGGCCA	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	5 cut(s)	75, 216, 651, 750, 797
Mva1269I	GAATGC	2 cut(s)	248, 397
MwoI	GCNNNNNNNGC	6 cut(s)	65, 192, 350, 516, 704, 743
NdeII	GATC	3 cut(s)	264, 775, 856
NlaIII	CATG	3 cut(s)	276, 835, 893
NlaIV	GGNNCC	2 cut(s)	6, 494
NmuCI	GTSAC	2 cut(s)	218, 224
PceI	AGGCCT	1 cut(s)	594
PctI	GAATGC	2 cut(s)	248, 397
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	6 cut(s)	194, 346, 424, 541, 736, 748
PleI	GAGTC	1 cut(s)	894
PpsI	GAGTC	1 cut(s)	894
PspN4I	GGNNCC	2 cut(s)	6, 494
PspPI	GGNCC	1 cut(s)	840
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	494, 644
RsaNI	GTAC	2 cut(s)	493, 643
SaqAI	TTAA	3 cut(s)	291, 585, 804
SatI	GCNGC	6 cut(s)	193, 345, 423, 540, 735, 747
Sau3AI	GATC	3 cut(s)	264, 775, 856
Sau96I	GGNCC	1 cut(s)	840
SchI	GAGTC	1 cut(s)	895
SduI	GDGCHC	1 cut(s)	260
SfaNI	GCATC	2 cut(s)	340, 553
SfcI	CTRYAG	2 cut(s)	138, 423
SinI	GGWCC	1 cut(s)	840
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	4 cut(s)	145, 152, 438, 808
SseBI	AGGCCT	1 cut(s)	594
SsiI	CCGC	4 cut(s)	125, 193, 201, 756
SspI	AATATT	2 cut(s)	473, 848
SspMI	CTAG	5 cut(s)	26, 50, 212, 489, 668
StuI	AGGCCT	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	3 cut(s)	122, 165, 660
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	4 cut(s)	145, 152, 438, 808
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	3 cut(s)	291, 585, 804
Tru9I	TTAA	3 cut(s)	291, 585, 804
TscAI	CASTG	2 cut(s)	227, 692
TseFI	GTSAC	2 cut(s)	218, 224
TseI	GCWGC	5 cut(s)	344, 422, 539, 734, 746
Tsp45I	GTSAC	2 cut(s)	218, 224
TspDTI	ATGAA	3 cut(s)	126, 255, 390
TspRI	CASTG	2 cut(s)	227, 692
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	840
XapI	RAATTY	1 cut(s)	808
XbaI	TCTAGA	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	5 cut(s)	26, 50, 212, 489, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.