Rh1AG273700

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000601
Physical Location & Seq
Forward (+)
50154243 .. 50155136
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG273700.1

Sequence Viewer

Length: 894 bp
ATGGCACCAAAGTTGGGGATTTCACTGGCATTCCTCATTTCAGTAACTCTAGCACTACAGATTGGAGCCAATGCCGCAGGCATTGCGATTTACTGGGGTCAAAATGGGAACGAGGGTACCTTGGAAGAGACCTGTGCCACAGGCAACTATGACTATGTGAACATAGCTTTTCTCCCAACATTCGGCAATGGCCAGACTCCCATGATAAACCTAGCCGGACATTGTGATCCTTCCACTAATGGCTGCACCGGTTTGAGCTCCGACATTAAGTCGTGCCAAGCAAAAGGGGTCAAGGTGATTCTTTCGATCGGAGGAGGAGCAGGGAGCTACTACCTCACATCTAAAGAGGATGCCAGGCAGGTTGCAATCTATTTGTGGAACAATTTCTTGGGAGGAACTTCATCTTCTCGCCCTCTTGGTGACGCTGTTTTGGATGGAATTGATTTTGATATCGAGGGAGGAACAAACCTACATTGGGATGACCTCGCTACGTTCCTCTCTGCATACAGCAACCAAGGTAAGAAGGTTTACTTGACCGCAGCGCCCCAGTGCCCTTTCCCTGATGCTTGGGTTGGAGGTGCCCTCAAGACGGGCCTTTTTGACTACGTTTGGGTCCAATTCTACAACAACCCTCCATGCCAATACTCGGCCGATATCAGCAACCTTGTAAGTGCATGGAATCAGTGGGTTTCCGATATTCCGGCCACCAAGATATTCCTTGGTCTACCAGCTGCTCCTGAAGCTGCTGGAAGTGGCTTTATTCCTGTCAATGATCTCACTTCTAAAGTGCTTCCAGCAATTAAAGGTTCGTCCAAGTATGGAGGGGTCATGCTTTGGTCCAAGTATTATGATGATCAGACTAAATACAGTGCTTCCATCAAGAACTACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

297

Amino Acids

31.63

Weight (kDa)

4.84

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 28 - 245 3e-21 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 3 cut(s) 4, 116, 578
AccI GTMKAC 1 cut(s) 724
AciI CCGC 2 cut(s) 75, 537
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 3 cut(s) 190, 648, 702
AcuI CTGAAG 1 cut(s) 759
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 5 cut(s) 14, 182, 475, 589, 646
AgeI ACCGGT 1 cut(s) 248
AhdI GACNNNNNGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 353
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 5 cut(s) 167, 258, 327, 731, 743
AluI AGCT 5 cut(s) 167, 258, 327, 731, 743
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 221
AoxI GGCC 4 cut(s) 190, 592, 648, 702
ApeKI GCWGC 4 cut(s) 243, 539, 731, 743
AsiGI ACCGGT 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 383
Asp718I GGTACC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 3 cut(s) 592, 613, 837
AsuHPI GGTGA 2 cut(s) 307, 431
AvaII GGWCC 2 cut(s) 613, 837
BaeGI GKGCMC 2 cut(s) 554, 583
BaeI ACNNNNGTAYC 2 cut(s) 100, 133
BalI TGGCCA 1 cut(s) 192
BanI GGYRCC 3 cut(s) 4, 116, 578
BanII GRGCYC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 4 cut(s) 230, 551, 718, 730
BccI CCATC 2 cut(s) 428, 884
BciT130I CCWGG 1 cut(s) 355
BclI TGATCA 1 cut(s) 853
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 3 cut(s) 50, 212, 892
BfmI CTRYAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 545
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 5 cut(s) 75, 244, 540, 732, 744
BlsI GCNGC 5 cut(s) 76, 245, 541, 733, 745
Bme1390I CCNGG 1 cut(s) 355
Bme18I GGWCC 2 cut(s) 613, 837
BmeRI GACNNNNNGTC 1 cut(s) 268
BmgT120I GGNCC 3 cut(s) 592, 613, 837
BmiI GGNNCC 5 cut(s) 6, 67, 118, 580, 614
BmrFI CCNGG 1 cut(s) 355
BmrI ACTGGG 2 cut(s) 103, 541
BmsI GCATC 2 cut(s) 340, 553
BmuI ACTGGG 2 cut(s) 103, 541
BplI GAGNNNNNCTC 2 cut(s) 567, 599
BpuEI CTTGAG 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 120, 514, 718
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 182, 475, 589, 646
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 30, 98, 547
Bse3DI GCAATG 2 cut(s) 81, 193
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 3 cut(s) 120, 514, 718
BseGI GGATG 3 cut(s) 355, 439, 484
BseLI CCNNNNNNNGG 5 cut(s) 14, 182, 475, 589, 646
BseMI GCAATG 2 cut(s) 81, 193
BseNI ACTGG 3 cut(s) 30, 98, 547
BseRI GAGGAG 2 cut(s) 327, 330
BseSI GKGCMC 2 cut(s) 554, 583
BseX3I CGGCCG 1 cut(s) 648
BseXI GCAGC 4 cut(s) 230, 551, 718, 730
BsgI GTGCAG 1 cut(s) 229
Bsh1285I CGRYCG 2 cut(s) 309, 651
BshFI GGCC 4 cut(s) 192, 594, 650, 704
BshNI GGYRCC 3 cut(s) 4, 116, 578
BshTI ACCGGT 1 cut(s) 248
BsiEI CGRYCG 2 cut(s) 309, 651
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 3 cut(s) 216, 249, 701
BslI CCNNNNNNNGG 5 cut(s) 14, 182, 475, 589, 646
BsmAI GTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 4 cut(s) 192, 594, 650, 704
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 3 cut(s) 260, 554, 583
Bsp143I GATC 4 cut(s) 226, 306, 772, 853
BspACI CCGC 2 cut(s) 75, 537
BspANI GGCC 4 cut(s) 192, 594, 650, 704
BspLI GGNNCC 5 cut(s) 6, 67, 118, 580, 614
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 3 cut(s) 4, 116, 578
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 81, 193
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 3 cut(s) 30, 98, 547
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 120, 514, 718
BssMI GATC 4 cut(s) 226, 306, 772, 853
BssT1I CCWWGG 3 cut(s) 120, 514, 718
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 869
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 3 cut(s) 355, 439, 484
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 4 cut(s) 229, 309, 775, 856
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 4 cut(s) 226, 306, 772, 853
BstMCI CGRYCG 2 cut(s) 309, 651
BstMWI GCNNNNNNNGC 3 cut(s) 74, 83, 740
BstNI CCWGG 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 2 cut(s) 554, 583
BstV1I GCAGC 4 cut(s) 230, 551, 718, 730
BstZI CGGCCG 1 cut(s) 648
BsuRI GGCC 4 cut(s) 192, 594, 650, 704
BtsCI GGATG 3 cut(s) 355, 439, 484
BtsIMutI CAGTG 4 cut(s) 23, 554, 689, 874
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 3 cut(s) 592, 613, 837
CseI GACGC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 117
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 4 cut(s) 202, 636, 675, 829
CviQI GTAC 1 cut(s) 117
DpnI GATC 4 cut(s) 228, 308, 774, 855
DpnII GATC 4 cut(s) 226, 306, 772, 853
DriI GACNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 3 cut(s) 190, 648, 702
EagI CGGCCG 1 cut(s) 648
Eam1104I CTCTTC 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 258
EclXI CGGCCG 1 cut(s) 648
Eco130I CCWWGG 3 cut(s) 120, 514, 718
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 122
Eco32I GATATC 2 cut(s) 451, 655
Eco47I GGWCC 2 cut(s) 613, 837
Eco52I CGGCCG 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 759
EcoICRI GAGCTC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 353
EcoRV GATATC 2 cut(s) 451, 655
EcoT14I CCWWGG 3 cut(s) 120, 514, 718
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 3 cut(s) 120, 514, 718
FaeI CATG 4 cut(s) 205, 639, 678, 832
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 4 cut(s) 201, 635, 674, 828
FbaI TGATCA 1 cut(s) 853
FblI GTMKAC 1 cut(s) 724
Fnu4HI GCNGC 5 cut(s) 75, 244, 540, 732, 744
FokI GGATG 3 cut(s) 362, 446, 491
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 5 cut(s) 75, 244, 540, 732, 744
FspBI CTAG 3 cut(s) 50, 212, 892
GlaI GCGC 1 cut(s) 543
GluI GCNGC 5 cut(s) 75, 244, 540, 732, 744
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 4 cut(s) 192, 594, 650, 704
HapII CCGG 3 cut(s) 216, 249, 701
HgaI GACGC 1 cut(s) 431
HhaI GCGC 1 cut(s) 544
Hin1II CATG 4 cut(s) 205, 639, 678, 832
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HinfI GANTC 3 cut(s) 196, 298, 679
HpaII CCGG 3 cut(s) 216, 249, 701
HphI GGTGA 2 cut(s) 307, 431
Hpy166II GTNNAC 3 cut(s) 160, 529, 725
Hpy188I TCNGA 4 cut(s) 262, 311, 694, 858
Hpy188III TCNNGA 3 cut(s) 586, 737, 880
Hpy8I GTNNAC 3 cut(s) 160, 529, 725
HpyAV CCTTC 2 cut(s) 240, 517
HpyCH4III ACNGT 1 cut(s) 869
HpyCH4IV ACGT 2 cut(s) 491, 606
HpyCH4V TGCA 4 cut(s) 246, 365, 503, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 83, 740
HpySE526I ACGT 2 cut(s) 491, 606
Hsp92II CATG 4 cut(s) 205, 639, 678, 832
HspAI GCGC 1 cut(s) 542
KpnI GGTACC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 853
Kzo9I GATC 4 cut(s) 226, 306, 772, 853
LmnI GCTCC 5 cut(s) 65, 263, 317, 324, 739
Lsp1109I GCAGC 4 cut(s) 230, 551, 718, 730
LweI GCATC 2 cut(s) 340, 553
MaeI CTAG 3 cut(s) 50, 212, 892
MaeII ACGT 2 cut(s) 491, 606
MaeIII GTNAC 2 cut(s) 43, 419
MalI GATC 4 cut(s) 228, 308, 774, 855
MboI GATC 4 cut(s) 226, 306, 772, 853
MboII GAAGA 2 cut(s) 137, 396
MhlI GDGCHC 3 cut(s) 260, 554, 583
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 4 cut(s) 382, 438, 617, 798
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 2 cut(s) 285, 553
Mox20I TGGCCA 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 383
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 267, 801
MslI CAYNNNNRTG 1 cut(s) 477
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 3 cut(s) 216, 249, 701
MspR9I CCNGG 1 cut(s) 355
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 3 cut(s) 74, 83, 740
NdeII GATC 4 cut(s) 226, 306, 772, 853
NlaIII CATG 4 cut(s) 205, 639, 678, 832
NlaIV GGNNCC 5 cut(s) 6, 67, 118, 580, 614
NmeAIII GCCGAG 1 cut(s) 626
NmuCI GTSAC 1 cut(s) 419
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 2 cut(s) 298, 679
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 5 cut(s) 76, 245, 541, 733, 745
Ple19I CGATCG 1 cut(s) 309
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 5 cut(s) 6, 67, 118, 580, 614
PspPI GGNCC 3 cut(s) 592, 613, 837
PvuI CGATCG 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 477
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 267, 801
SatI GCNGC 5 cut(s) 75, 244, 540, 732, 744
Sau3AI GATC 4 cut(s) 226, 306, 772, 853
Sau96I GGNCC 3 cut(s) 592, 613, 837
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 355
SduI GDGCHC 3 cut(s) 260, 554, 583
SfaNI GCATC 2 cut(s) 340, 553
SfcI CTRYAG 1 cut(s) 56
SinI GGWCC 2 cut(s) 613, 837
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 4 cut(s) 382, 438, 617, 798
SsiI CCGC 2 cut(s) 75, 537
SspMI CTAG 3 cut(s) 50, 212, 892
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 353
StyI CCWWGG 3 cut(s) 120, 514, 718
TaaI ACNGT 1 cut(s) 869
TaiI ACGT 2 cut(s) 494, 609
TaqI TCGA 2 cut(s) 305, 453
TasI AATT 4 cut(s) 382, 438, 617, 798
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 2 cut(s) 298, 679
Tru1I TTAA 2 cut(s) 267, 801
Tru9I TTAA 2 cut(s) 267, 801
TscAI CASTG 4 cut(s) 30, 554, 689, 874
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 4 cut(s) 243, 539, 731, 743
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 390
TspRI CASTG 4 cut(s) 30, 554, 689, 874
VpaK11BI GGWCC 2 cut(s) 613, 837
XmiI GTMKAC 1 cut(s) 724
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 3 cut(s) 50, 212, 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.