Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Reverse (-)

21442156 .. 21442703

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCCGCCAAGTTGCTACTTACTTGTGGAACAACTTCTTGGGAGGACAGTCCTCTTCAAGGACGTTGGGAGATGCTGTTTTGGATGGAGTCGACTTTGACATTGAAGGAGCGACTGATCAATATTGGGATGACCTCGCGAGGCCTCTTCGACTTTGTTTGGGTACAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGTGATATTTCAAATCTCGAAGATGGTTGGAAGCAATGGACTTCCGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCCCAAGCTGCTGGTAGTGGATTTATTCCAGCGGCTGATCTCAACTCACAAGTCCTTCCGGCTATCAAGAATTCAGCTAAATATGGAGGTGTCATGCTTTGGTCTAAGTATTATGATGATCTAGATGGATACAGCTCTTCCATCAAGAATGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

148

Amino Acids

16.51

Weight (kDa)

4.98

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	92
AccII	CGCG	1 cut(s)	139
AciI	CCGC	3 cut(s)	6, 246, 320
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	2 cut(s)	165, 194
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	59, 106, 213
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	3 cut(s)	296, 365, 423
AluI	AGCT	3 cut(s)	296, 365, 423
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	2 cut(s)	284, 296
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	271, 283
BccI	CCATC	4 cut(s)	79, 218, 407, 437
BciVI	GTATCC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	117
BfaI	CTAG	2 cut(s)	410, 445
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	3 cut(s)	285, 297, 321
BlsI	GCNGC	3 cut(s)	286, 298, 322
BmsI	GCATC	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	242
BseGI	GGATG	2 cut(s)	90, 135
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	271, 283
BsgI	GTGCAG	2 cut(s)	240, 270
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	59
BsnI	GGCC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	117, 325, 406
Bsp68I	TCGCGA	1 cut(s)	139
BspACI	CCGC	3 cut(s)	6, 246, 320
BspANI	GGCC	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	117, 325, 406
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	3 cut(s)	60, 152, 430
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	271, 393
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	90, 135
BstFNI	CGCG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	120, 328, 409
BstMBI	GATC	3 cut(s)	117, 325, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 293
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	271, 283
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	90, 135
BtuMI	TCGCGA	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	164, 193
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	6 cut(s)	144, 296, 323, 350, 365, 423
CviKI_1	RGCY	6 cut(s)	144, 296, 323, 350, 365, 423
CviQI	GTAC	2 cut(s)	164, 193
DdeI	CTNAG	2 cut(s)	271, 393
DpnI	GATC	3 cut(s)	119, 327, 408
DpnII	GATC	3 cut(s)	117, 325, 406
Eam1104I	CTCTTC	3 cut(s)	60, 152, 430
EarI	CTCTTC	3 cut(s)	60, 152, 430
EciI	GGCGGA	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	358
FaeI	CATG	1 cut(s)	385
FaiI	YATR	4 cut(s)	261, 372, 383, 402
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	1 cut(s)	381
FauI	CCCGC	1 cut(s)	13
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	3 cut(s)	285, 297, 321
FokI	GGATG	2 cut(s)	97, 142
Fsp4HI	GCNGC	3 cut(s)	285, 297, 321
FspBI	CTAG	2 cut(s)	410, 445
GluI	GCNGC	3 cut(s)	285, 297, 321
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	93, 195
Hpy188III	TCNNGA	5 cut(s)	138, 218, 355, 410, 433
Hpy8I	GTNNAC	2 cut(s)	93, 195
HpyAV	CCTTC	2 cut(s)	100, 353
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	257, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 293
HpyF3I	CTNAG	2 cut(s)	271, 393
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	117, 325, 406
LguI	GCTCTTC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	7 cut(s)	186, 203, 267, 285, 294, 330, 360
Lsp1109I	GCAGC	2 cut(s)	271, 283
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	2 cut(s)	410, 445
MaeII	ACGT	1 cut(s)	64
MalI	GATC	3 cut(s)	119, 327, 408
MboI	GATC	3 cut(s)	117, 325, 406
MboII	GAAGA	4 cut(s)	47, 139, 233, 417
MluCI	AATT	2 cut(s)	167, 358
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	37, 63, 134, 145, 155, 192, 368
MroXI	GAANNNNTTC	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	254, 293
NdeII	GATC	3 cut(s)	117, 325, 406
NlaIII	CATG	1 cut(s)	385
NruI	TCGCGA	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	286, 298, 322
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	139
RsaI	GTAC	2 cut(s)	165, 194
RsaNI	GTAC	2 cut(s)	164, 193
SalI	GTCGAC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	430
SatI	GCNGC	3 cut(s)	285, 297, 321
Sau3AI	GATC	3 cut(s)	117, 325, 406
SchI	GAGTC	1 cut(s)	98
SetI	ASST	6 cut(s)	67, 137, 298, 367, 379, 425
SfaNI	GCATC	1 cut(s)	63
Sse9I	AATT	2 cut(s)	167, 358
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	3 cut(s)	6, 246, 320
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	2 cut(s)	410, 445
StuI	AGGCCT	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	92, 150, 219
TasI	AATT	2 cut(s)	167, 358
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	284, 296
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	358
XbaI	TCTAGA	1 cut(s)	409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	2 cut(s)	410, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.