RLG00000020900

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000601
Physical Location & Seq
Forward (+)
69909205 .. 69910008
804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020900

Sequence Viewer

Length: 621 bp
ATGCAGCTTTCCCCTGCCATAAACCTCGCCGGTCACTGTGACCCGTCTACCAACGAATGCACCAAATTGAGTCCCGAGATCAAGTCATGCCAGGCCGAAGGCATTAAGGTCATACTTTACATAGGAGGAGCTGCAGGGAGCTACTCTTTGGCTTCATCCGACGATGCCTGCCAAGTTGCTACTTACTTGTGGAACAACTTCTTGGGAGGACAGTCCTCTTCGAGGCCGTTGGGAGAAGCTGTTTTGGATGGAGTTGACTTTGACATTGAAGGAGGGAATGATCAACATTGGGATGACCTTGCGAGGTACCTTTCCGGCCTCTTCGACTTTGTTTGGGTACAATTCTACAACAACCGTCCTTGCCAGTACACTTTCGGCGATATTTCAAATCTCGAAGGTGGTTGGAAGCAATGGACTTCTGCCATTCCTGCTCATAAGATTTTTTTAGGACTTCCTGCTGCACCTCAAGCTGCTGGTAGTGGATTTATTCCTGCGGCTGATCTCAACTCACAAGTCCTTCCGACTATCAAAAATTATGCGAAGTATGGAGGTGTCATGCTTTGGTCCAAGTACTATGACGATCTCGATGGGTACAGCTCTTCCATCAAGAATGATGTCTAG

Protein Analysis

207

Amino Acids

22.34

Weight (kDa)

4.5

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 26 - 105 3.2e-06 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 47
AciI CCGC 1 cut(s) 494
AfaI GTAC 5 cut(s) 308, 339, 368, 572, 593
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 269, 387
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 6 cut(s) 7, 131, 141, 239, 470, 597
AluI AGCT 6 cut(s) 7, 131, 141, 239, 470, 597
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 3 cut(s) 93, 224, 316
ApeKI GCWGC 4 cut(s) 4, 131, 458, 470
Asp700I GAANNNNTTC 1 cut(s) 197
Asp718I GGTACC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 564
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 564
BanI GGYRCC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 16, 118, 445, 457
BccI CCATC 3 cut(s) 242, 581, 611
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 92
BclI TGATCA 1 cut(s) 280
BfaI CTAG 1 cut(s) 619
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 5 cut(s) 5, 132, 459, 471, 495
BlsI GCNGC 5 cut(s) 6, 133, 460, 472, 496
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 564
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 564
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 450
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 364
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 3 cut(s) 155, 253, 298
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 4 cut(s) 16, 118, 445, 457
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 3 cut(s) 95, 226, 318
BshNI GGYRCC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 2 cut(s) 30, 315
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 3 cut(s) 95, 226, 318
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 4 cut(s) 78, 280, 499, 580
BspACI CCGC 1 cut(s) 494
BspANI GGCC 3 cut(s) 95, 226, 318
BspLI GGNNCC 1 cut(s) 308
BspMAI CTGCAG 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 604
BspT107I GGYRCC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 29
BssMI GATC 4 cut(s) 78, 280, 499, 580
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 3 cut(s) 38, 213, 356
Bst6I CTCTTC 3 cut(s) 223, 326, 604
BstC8I GCNNGC 1 cut(s) 169
BstENI CCTNNNNNAGG 1 cut(s) 220
BstF5I GGATG 3 cut(s) 155, 253, 298
BstKTI GATC 4 cut(s) 81, 283, 502, 583
BstMBI GATC 4 cut(s) 78, 280, 499, 580
BstMWI GCNNNNNNNGC 2 cut(s) 428, 467
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 16, 118, 445, 457
BsuRI GGCC 3 cut(s) 95, 226, 318
BtsCI GGATG 3 cut(s) 155, 253, 298
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 564
Csp6I GTAC 5 cut(s) 307, 338, 367, 571, 592
CviAII CATG 2 cut(s) 87, 556
CviQI GTAC 5 cut(s) 307, 338, 367, 571, 592
DpnI GATC 4 cut(s) 80, 282, 501, 582
DpnII GATC 4 cut(s) 78, 280, 499, 580
Eam1104I CTCTTC 3 cut(s) 223, 326, 604
EarI CTCTTC 3 cut(s) 223, 326, 604
Eco47I GGWCC 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 74
EcoNI CCTNNNNNAGG 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 90, 559
FaiI YATR 9 cut(s) 20, 88, 113, 122, 435, 537, 546, 557, 576
FaqI GGGAC 1 cut(s) 57
FatI CATG 2 cut(s) 86, 555
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 5 cut(s) 5, 132, 459, 471, 495
FokI GGATG 3 cut(s) 142, 260, 305
Fsp4HI GCNGC 5 cut(s) 5, 132, 459, 471, 495
FspBI CTAG 1 cut(s) 619
GluI GCNGC 5 cut(s) 5, 132, 459, 471, 495
HaeIII GGCC 3 cut(s) 95, 226, 318
HapII CCGG 2 cut(s) 30, 315
Hin1II CATG 2 cut(s) 90, 559
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 1 cut(s) 70
HpaII CCGG 2 cut(s) 30, 315
Hpy166II GTNNAC 3 cut(s) 48, 256, 369
Hpy188I TCNGA 2 cut(s) 160, 522
Hpy188III TCNNGA 4 cut(s) 74, 392, 584, 607
Hpy8I GTNNAC 3 cut(s) 48, 256, 369
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 92, 263, 389, 527
HpyCH4III ACNGT 3 cut(s) 38, 213, 356
HpyCH4V TGCA 4 cut(s) 4, 60, 134, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 467
Hsp92II CATG 2 cut(s) 90, 559
KpnI GGTACC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 4 cut(s) 78, 280, 499, 580
LguI GCTCTTC 1 cut(s) 604
LmnI GCTCC 2 cut(s) 128, 138
Lsp1109I GCAGC 4 cut(s) 16, 118, 445, 457
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 619
MaeIII GTNAC 2 cut(s) 32, 38
MalI GATC 4 cut(s) 80, 282, 501, 582
MboI GATC 4 cut(s) 78, 280, 499, 580
MboII GAAGA 3 cut(s) 210, 313, 591
MluCI AATT 3 cut(s) 65, 341, 532
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 3 cut(s) 183, 383, 545
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 2 cut(s) 30, 315
MspR9I CCNGG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 428, 467
NdeII GATC 4 cut(s) 78, 280, 499, 580
NlaIII CATG 2 cut(s) 90, 559
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 2 cut(s) 32, 38
PciSI GCTCTTC 1 cut(s) 604
PctI GAATGC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 197
PkrI GCNGC 5 cut(s) 6, 133, 460, 472, 496
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 564
PstI CTGCAG 1 cut(s) 136
RsaI GTAC 5 cut(s) 308, 339, 368, 572, 593
RsaNI GTAC 5 cut(s) 307, 338, 367, 571, 592
RseI CAYNNNNRTG 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 604
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 5 cut(s) 5, 132, 459, 471, 495
Sau3AI GATC 4 cut(s) 78, 280, 499, 580
Sau96I GGNCC 1 cut(s) 564
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 92
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 3 cut(s) 65, 341, 532
SsiI CCGC 1 cut(s) 494
SspMI CTAG 1 cut(s) 619
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 3 cut(s) 38, 213, 356
TaqI TCGA 4 cut(s) 221, 324, 393, 585
TasI AATT 3 cut(s) 65, 341, 532
TatI WGTACW 2 cut(s) 366, 570
TauI GCSGC 1 cut(s) 497
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 2 cut(s) 32, 38
TseI GCWGC 4 cut(s) 4, 131, 458, 470
Tsp45I GTSAC 2 cut(s) 32, 38
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 564
XagI CCTNNNNNAGG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 1 cut(s) 619
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.