RLG00000009194

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000601
Physical Location & Seq
Forward (+)
48669863 .. 48670750
888 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009194

Sequence Viewer

Length: 888 bp
ATGGCTTCCAAGTCTATATTTTCAGTAACAATATTGCTACTATTTCTGGCTGTTGGATCCAATGCAGGTGGAATTGCTATATATTGGGGCCAGAATGGGAATGAAGGCACATTAGCGGAAACATGTGCTTCAGGGAACTACAAATTCGTAAACATAGCTTTCCTCTCATCATTTGGTAATGGCCAAACCCCTACCATAAACCTCGCCGGTCACTGTGACCCATCCACCAACGAATGCACCAAGTTGAGCCCCGAGATCAAGTCATGCCAGGCCAAAGGCATTAAGGTCATACTCTCCATAGGAGGAGCTGCAGGAAGCTACTCTTTGGCTTCATCCGACGATGCCCGCCAAGTTGCTACTTACTTGTGGAACAACTTCTTGGGAGGACAGTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTCGACTTTGACATTGAAGGAGGGACTGATCAATATTGGGATGACCTCGCGAGGTACCTTTCCGGGTACAGCAAGAAGGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGACATGCACTCAACACAGGCCTCTTCGACTTTGTTTGGGTACAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGCGATATTTCAAATCTCGAAGATGGTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAGGATTTTCTTAGGACTTCCTGCTGCACCCCAAGCTGCTGGTAGTGGATTTATTCCTGCGGCTGATCTCAAGTCACAAGTCCTTCCGGCTATCAAAAATTCAGCTAAATATGGAGTTGTCATGCTTTGGTCTAAGTATTATGATGATCTCGATGGATACAGCTCCTCCATCAAGAATGATGTCTAG

Protein Analysis

296

Amino Acids

31.51

Weight (kDa)

5.15

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 25 - 243 2.3e-21 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 56
Acc65I GGTACC 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 483
AccI GTMKAC 1 cut(s) 432
AccII CGCG 1 cut(s) 479
AciI CCGC 3 cut(s) 116, 346, 761
AclWI GGATC 2 cut(s) 51, 64
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 2 cut(s) 143, 799
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 4 cut(s) 485, 497, 606, 635
AfiI CCNNNNNNNGG 1 cut(s) 399
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 3 cut(s) 399, 446, 654
AjnI CCWGG 1 cut(s) 267
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 6 cut(s) 158, 308, 318, 737, 806, 864
AluI AGCT 6 cut(s) 158, 308, 318, 737, 806, 864
AlwI GGATC 2 cut(s) 51, 64
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 5 cut(s) 88, 181, 270, 401, 583
ApeKI GCWGC 4 cut(s) 308, 530, 725, 737
ApoI RAATTY 2 cut(s) 143, 799
Asp700I GAANNNNTTC 1 cut(s) 374
Asp718I GGTACC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 493
AvaI CYCGRG 1 cut(s) 251
BalI TGGCCA 1 cut(s) 183
BamHI GGATCC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 251
BbvI GCAGC 4 cut(s) 295, 517, 712, 724
BccI CCATC 5 cut(s) 229, 419, 659, 848, 878
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 269
BciVI GTATCC 1 cut(s) 851
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 1 cut(s) 493
BfaI CTAG 1 cut(s) 886
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 56
BfuI GTATCC 1 cut(s) 851
BisI GCNGC 5 cut(s) 309, 531, 726, 738, 762
BlsI GCNGC 5 cut(s) 310, 532, 727, 739, 763
Bme1390I CCNGG 2 cut(s) 269, 493
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 3 cut(s) 58, 89, 485
BmrFI CCNGG 2 cut(s) 269, 493
BmsI GCATC 3 cut(s) 331, 403, 544
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 493
BsaXI ACNNNNNCTCC 6 cut(s) 402, 432, 517, 547, 851, 881
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 683
BseBI CCWGG 1 cut(s) 269
BseGI GGATG 4 cut(s) 221, 332, 430, 475
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 683
BseNI ACTGG 1 cut(s) 631
BseRI GAGGAG 2 cut(s) 318, 856
BseXI GCAGC 4 cut(s) 295, 517, 712, 724
BsgI GTGCAG 2 cut(s) 681, 711
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 5 cut(s) 90, 183, 272, 403, 585
BshNI GGYRCC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 3 cut(s) 207, 492, 788
BslFI GGGAC 2 cut(s) 466, 528
BslI CCNNNNNNNGG 1 cut(s) 399
BsmFI GGGAC 2 cut(s) 466, 528
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 5 cut(s) 90, 183, 272, 403, 585
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 5 cut(s) 56, 255, 457, 766, 847
Bsp68I TCGCGA 1 cut(s) 479
BspACI CCGC 3 cut(s) 116, 346, 761
BspANI GGCC 5 cut(s) 90, 183, 272, 403, 585
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 3 cut(s) 58, 89, 485
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 51, 64
BspT107I GGYRCC 1 cut(s) 483
BsrDI GCAATG 1 cut(s) 683
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 631
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 5 cut(s) 56, 255, 457, 766, 847
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 3 cut(s) 215, 390, 540
Bst6I CTCTTC 2 cut(s) 400, 593
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 712, 834
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 4 cut(s) 221, 332, 430, 475
BstFNI CGCG 1 cut(s) 479
BstKTI GATC 5 cut(s) 59, 258, 460, 769, 850
BstMBI GATC 5 cut(s) 56, 255, 457, 766, 847
BstMWI GCNNNNNNNGC 3 cut(s) 507, 695, 734
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 2 cut(s) 126, 572
BstSCI CCNGG 2 cut(s) 267, 491
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 4 cut(s) 295, 517, 712, 724
BstX2I RGATCY 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 1 cut(s) 56
BsuI GTATCC 1 cut(s) 851
BsuRI GGCC 5 cut(s) 90, 183, 272, 403, 585
BtsCI GGATG 4 cut(s) 221, 332, 430, 475
BtsIMutI CAGTG 2 cut(s) 211, 545
BtuMI TCGCGA 1 cut(s) 479
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 88
Csp6I GTAC 4 cut(s) 484, 496, 605, 634
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 4 cut(s) 123, 264, 569, 823
CviQI GTAC 4 cut(s) 484, 496, 605, 634
DdeI CTNAG 2 cut(s) 712, 834
DpnI GATC 5 cut(s) 58, 257, 459, 768, 849
DpnII GATC 5 cut(s) 56, 255, 457, 766, 847
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 400, 593
EarI CTCTTC 2 cut(s) 400, 593
Eco147I AGGCCT 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 4 cut(s) 126, 267, 572, 826
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 2 cut(s) 466, 528
FatI CATG 4 cut(s) 122, 263, 568, 822
FauI CCCGC 1 cut(s) 353
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 5 cut(s) 309, 531, 726, 738, 762
FokI GGATG 4 cut(s) 208, 319, 437, 482
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 5 cut(s) 309, 531, 726, 738, 762
FspBI CTAG 1 cut(s) 886
GluI GCNGC 5 cut(s) 309, 531, 726, 738, 762
HaeIII GGCC 5 cut(s) 90, 183, 272, 403, 585
HapII CCGG 3 cut(s) 207, 492, 788
Hin1II CATG 4 cut(s) 126, 267, 572, 826
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 1 cut(s) 429
HpaII CCGG 3 cut(s) 207, 492, 788
Hpy166II GTNNAC 4 cut(s) 151, 433, 520, 636
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 5 cut(s) 478, 551, 659, 851, 874
Hpy8I GTNNAC 4 cut(s) 151, 433, 520, 636
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 4 cut(s) 98, 440, 499, 794
HpyCH4III ACNGT 3 cut(s) 215, 390, 540
HpyCH4V TGCA 6 cut(s) 65, 237, 311, 572, 698, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 507, 695, 734
HpyF3I CTNAG 2 cut(s) 712, 834
Hsp92II CATG 4 cut(s) 126, 267, 572, 826
KpnI GGTACC 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 5 cut(s) 56, 255, 457, 766, 847
LmnI GCTCC 3 cut(s) 305, 538, 869
Lsp1109I GCAGC 4 cut(s) 295, 517, 712, 724
LweI GCATC 3 cut(s) 331, 403, 544
MaeI CTAG 1 cut(s) 886
MaeIII GTNAC 4 cut(s) 25, 209, 215, 774
MalI GATC 5 cut(s) 58, 257, 459, 768, 849
MboI GATC 5 cut(s) 56, 255, 457, 766, 847
MboII GAAGA 3 cut(s) 387, 580, 674
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 4 cut(s) 72, 143, 608, 799
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 1 cut(s) 438
MmeI TCCRAC 4 cut(s) 34, 360, 544, 650
Mox20I TGGCCA 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 374
MscI TGGCCA 1 cut(s) 183
MseI TTAA 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 3 cut(s) 207, 492, 788
MspR9I CCNGG 2 cut(s) 269, 493
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 3 cut(s) 507, 695, 734
NciI CCSGG 1 cut(s) 493
NdeII GATC 5 cut(s) 56, 255, 457, 766, 847
NlaIII CATG 4 cut(s) 126, 267, 572, 826
NlaIV GGNNCC 3 cut(s) 58, 89, 485
NmuCI GTSAC 3 cut(s) 209, 215, 774
NruI TCGCGA 1 cut(s) 479
NspI RCATGY 2 cut(s) 126, 572
PaqCI CACCTGC 1 cut(s) 56
PceI AGGCCT 1 cut(s) 585
PciI ACATGT 1 cut(s) 122
PctI GAATGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 374
PkrI GCNGC 5 cut(s) 310, 532, 727, 739, 763
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PscI ACATGT 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 58, 89, 485
PspPI GGNCC 1 cut(s) 88
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 56
RruI TCGCGA 1 cut(s) 479
RsaI GTAC 4 cut(s) 485, 497, 606, 635
RsaNI GTAC 4 cut(s) 484, 496, 605, 634
SalI GTCGAC 1 cut(s) 431
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 5 cut(s) 309, 531, 726, 738, 762
Sau3AI GATC 5 cut(s) 56, 255, 457, 766, 847
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 438
ScrFI CCNGG 2 cut(s) 269, 493
SduI GDGCHC 1 cut(s) 251
SfaNI GCATC 3 cut(s) 331, 403, 544
SfcI CTRYAG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 4 cut(s) 72, 143, 608, 799
SseBI AGGCCT 1 cut(s) 585
SsiI CCGC 3 cut(s) 116, 346, 761
SspI AATATT 2 cut(s) 33, 464
SspMI CTAG 1 cut(s) 886
StuI AGGCCT 1 cut(s) 585
StyD4I CCNGG 2 cut(s) 267, 491
TaaI ACNGT 3 cut(s) 215, 390, 540
TaqI TCGA 4 cut(s) 432, 591, 660, 852
TasI AATT 4 cut(s) 72, 143, 608, 799
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 764
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 218, 545
TseFI GTSAC 3 cut(s) 209, 215, 774
TseI GCWGC 4 cut(s) 308, 530, 725, 737
Tsp45I GTSAC 3 cut(s) 209, 215, 774
TspDTI ATGAA 2 cut(s) 117, 321
TspRI CASTG 2 cut(s) 218, 545
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 2 cut(s) 143, 799
XceI RCATGY 2 cut(s) 126, 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 432
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.