Rh2BG530900

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000601
Physical Location & Seq
Forward (+)
73952241 .. 73953286
1046 bp
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UTR
Exon/CDS
Intron
Rh2BG530900.1

Sequence Viewer

Length: 552 bp
ATGCCCGCCAAGTTGCTACTTACTTGTGGAACAACGTACTTCTTGGGAGGACAGTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTTGACATTGAAGGAGGGGATGATCAACATTGGGATGACCTTGCGAGGTACCTTTCCGGTTACAACAAGAAGGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTCAACACAGGCCTCTTCGACTTTGTTTGGGTACAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGCGATATTTCAAATCTCGAAGATGGTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCTCAAGCTGCTGGTAGTGGATTTATTCCTGCGACTGATCTCAACTCACAAGTCCTTCCGGCTATCAAAAATTCAGCTAAATATGGAGGTGTCATGCTTTGGTCGAAGTATTATGATGATCTCGATGGATACAGCTCCTCCATCAAGAATGATGTCTAG

Protein Analysis

183

Amino Acids

19.89

Weight (kDa)

4.67

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 29 - 131 1.4e-10 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AciI CCGC 1 cut(s) 6
AcsI RAATTY 1 cut(s) 463
AfaI GTAC 4 cut(s) 38, 149, 270, 299
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 3 cut(s) 63, 110, 318
AluBI AGCT 3 cut(s) 401, 470, 528
AluI AGCT 3 cut(s) 401, 470, 528
AoxI GGCC 2 cut(s) 65, 247
ApeKI GCWGC 3 cut(s) 194, 389, 401
ApoI RAATTY 1 cut(s) 463
Asp718I GGTACC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 181, 376, 388
BccI CCATC 4 cut(s) 83, 323, 512, 542
BceAI ACGGC 1 cut(s) 52
BciVI GTATCC 1 cut(s) 515
BclI TGATCA 1 cut(s) 121
BfaI CTAG 1 cut(s) 550
BfuI GTATCC 1 cut(s) 515
BisI GCNGC 3 cut(s) 195, 390, 402
BlsI GCNGC 3 cut(s) 196, 391, 403
BmiI GGNNCC 1 cut(s) 149
BmsI GCATC 2 cut(s) 67, 208
BpuEI CTTGAG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 6 cut(s) 66, 96, 181, 211, 515, 545
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 347
BseGI GGATG 3 cut(s) 94, 124, 139
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 520
BseXI GCAGC 3 cut(s) 181, 376, 388
BsgI GTGCAG 2 cut(s) 345, 375
BshFI GGCC 2 cut(s) 67, 249
BshNI GGYRCC 1 cut(s) 147
BsiSI CCGG 2 cut(s) 156, 452
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 2 cut(s) 67, 249
Bsp143I GATC 3 cut(s) 121, 430, 511
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 67, 249
BspLI GGNNCC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 1 cut(s) 295
BssMI GATC 3 cut(s) 121, 430, 511
Bst4CI ACNGT 2 cut(s) 54, 204
Bst6I CTCTTC 2 cut(s) 64, 257
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 376
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 3 cut(s) 94, 124, 139
BstKTI GATC 3 cut(s) 124, 433, 514
BstMBI GATC 3 cut(s) 121, 430, 511
BstMWI GCNNNNNNNGC 2 cut(s) 359, 398
BstV1I GCAGC 3 cut(s) 181, 376, 388
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 2 cut(s) 67, 249
BtsCI GGATG 3 cut(s) 94, 124, 139
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 4 cut(s) 37, 148, 269, 298
CviAII CATG 1 cut(s) 487
CviJI RGCY 6 cut(s) 67, 249, 401, 455, 470, 528
CviKI_1 RGCY 6 cut(s) 67, 249, 401, 455, 470, 528
CviQI GTAC 4 cut(s) 37, 148, 269, 298
DdeI CTNAG 1 cut(s) 376
DpnI GATC 3 cut(s) 123, 432, 513
DpnII GATC 3 cut(s) 121, 430, 511
Eam1104I CTCTTC 2 cut(s) 64, 257
EarI CTCTTC 2 cut(s) 64, 257
Eco147I AGGCCT 1 cut(s) 249
EcoNI CCTNNNNNAGG 1 cut(s) 61
FaeI CATG 1 cut(s) 490
FaiI YATR 5 cut(s) 225, 366, 477, 488, 507
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 1 cut(s) 192
FatI CATG 1 cut(s) 486
FauI CCCGC 1 cut(s) 13
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 195, 390, 402
FokI GGATG 3 cut(s) 101, 131, 146
Fsp4HI GCNGC 3 cut(s) 195, 390, 402
FspBI CTAG 1 cut(s) 550
GluI GCNGC 3 cut(s) 195, 390, 402
HaeIII GGCC 2 cut(s) 67, 249
HapII CCGG 2 cut(s) 156, 452
Hin1II CATG 1 cut(s) 490
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaII CCGG 2 cut(s) 156, 452
Hpy166II GTNNAC 3 cut(s) 97, 184, 300
Hpy188III TCNNGA 4 cut(s) 215, 323, 515, 538
Hpy8I GTNNAC 3 cut(s) 97, 184, 300
HpyAV CCTTC 3 cut(s) 104, 163, 458
HpyCH4III ACNGT 2 cut(s) 54, 204
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 236, 362, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 398
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 1 cut(s) 490
KpnI GGTACC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 430, 511
LmnI GCTCC 2 cut(s) 202, 533
Lsp1109I GCAGC 3 cut(s) 181, 376, 388
LweI GCATC 2 cut(s) 67, 208
MaeI CTAG 1 cut(s) 550
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 158
MalI GATC 3 cut(s) 123, 432, 513
MboI GATC 3 cut(s) 121, 430, 511
MboII GAAGA 3 cut(s) 51, 244, 338
MluCI AATT 2 cut(s) 272, 463
MmeI TCCRAC 2 cut(s) 208, 314
MnlI CCTC 9 cut(s) 41, 67, 107, 138, 260, 297, 405, 473, 541
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 156, 452
MwoI GCNNNNNNNGC 2 cut(s) 359, 398
NdeII GATC 3 cut(s) 121, 430, 511
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 1 cut(s) 149
PceI AGGCCT 1 cut(s) 249
PkrI GCNGC 3 cut(s) 196, 391, 403
PspN4I GGNNCC 1 cut(s) 149
RsaI GTAC 4 cut(s) 38, 149, 270, 299
RsaNI GTAC 4 cut(s) 37, 148, 269, 298
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 3 cut(s) 195, 390, 402
Sau3AI GATC 3 cut(s) 121, 430, 511
SetI ASST 9 cut(s) 38, 141, 149, 153, 397, 403, 472, 484, 530
SfaNI GCATC 2 cut(s) 67, 208
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 2 cut(s) 272, 463
SseBI AGGCCT 1 cut(s) 249
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 550
StuI AGGCCT 1 cut(s) 249
TaaI ACNGT 2 cut(s) 54, 204
TaiI ACGT 1 cut(s) 38
TaqI TCGA 4 cut(s) 255, 324, 497, 516
TasI AATT 2 cut(s) 272, 463
TatI WGTACW 1 cut(s) 297
TscAI CASTG 1 cut(s) 209
TseI GCWGC 3 cut(s) 194, 389, 401
TspRI CASTG 1 cut(s) 209
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.