Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Reverse (-)

29071864 .. 29072763

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G304600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTTCAAAGCCCACAATGTCTCTGGCATTGCTCTCTTTAGTGGTGGTGCTAGTTCTGGCTGTGGGGGCTAATGCAGGAGGAATTGCTATATATTGGGGTCAAAATGGAAATGAAGGCACATTAGCTGAAACTTGTGCTTCGGGGAATTACCAATTTGTAAACATAGCTTTTCTCTCCTCATTTGGCAATGGCCAAACCCCCGTGATCAACCTCGCCGGTCACTGTGACCCATCAACGAACGAATGTACCAAGTTGAGCCCACAGATAAAGTCATGCCAAGCCAAGGGGATTAAGGTCATTCTCTCCATAGGAGGAGGTGCTGGCAGCTATTCTCTAACCTCAGCTGATGATGCAAGGCAAGTTGCTACTTATCTGTGGAACAACTTCTTGGGAGGACACTCCTCTTCAAGGCCATTGGGAGCTGCTGTTTTGGATGGAATTGACTTTGATATTGAGGGAGGGACCGACCAGCATTGGGATGACCTTGCAAGGTACCTCTCTGGATATAGCAAGAAAGGCAAGAAAGTTTACTTGACTGCTGCCCCACAATGTCCCTTTCCTGATGCTTGGGTTGGAAATGCCCTTAAGACAGGCCTCTTTGACAATGTTTGGGTTCAGTTCTACAACAACCCTCCCTGCCAGTACACTTCCGGAGATGTGGCCAATCTCGAAGACTCGTGGAAGCAGTGGACTTCAGCCATTCCTGCACAAAAGATTTTCTTGGGATTGCCTGCTGCACCTCAAGCTGCTGGCAGTGGATTTATTCCTGCAACTGATCTCAACTCACAAATCCTTCCAGCTATAAAAAAATCGGCTAAGTATGGAGGTGTCATGCTCTGGTCCAAGTATTATGATGATATCACTGGATACAGCTCCTCCATCAAGAATCAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

300

Amino Acids

31.7

Weight (kDa)

6.28

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	653
AcoI	YGGCCR	2 cut(s)	193, 663
AcuI	CTGAAG	1 cut(s)	681
AfaI	GTAC	3 cut(s)	250, 497, 647
AfiI	CCNNNNNNNGG	3 cut(s)	286, 411, 478
AflII	CTTAAG	1 cut(s)	587
AgsI	TTSAA	2 cut(s)	9, 411
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	8 cut(s)	128, 170, 330, 347, 425, 749, 803, 876
AluI	AGCT	8 cut(s)	128, 170, 330, 347, 425, 749, 803, 876
Alw26I	GTCTC	1 cut(s)	27
Aor13HI	TCCGGA	1 cut(s)	653
AoxI	GGCC	4 cut(s)	193, 413, 595, 663
ApeKI	GCWGC	5 cut(s)	327, 425, 542, 737, 749
Asp700I	GAANNNNTTC	1 cut(s)	386
Asp718I	GGTACC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	465, 843
AvaII	GGWCC	2 cut(s)	465, 843
BaeI	ACNNNNGTAYC	2 cut(s)	232, 265
BalI	TGGCCA	2 cut(s)	195, 665
BanI	GGYRCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	679
BbsI	GAAGAC	1 cut(s)	681
BbvCI	CCTCAGC	1 cut(s)	343
BbvI	GCAGC	5 cut(s)	339, 412, 529, 724, 736
BccI	CCATC	3 cut(s)	241, 431, 890
BciVI	GTATCC	1 cut(s)	863
BclI	TGATCA	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	53, 898
BfrI	CTTAAG	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	863
BisI	GCNGC	5 cut(s)	328, 426, 543, 738, 750
BlsI	GCNGC	5 cut(s)	329, 427, 544, 739, 751
Bme18I	GGWCC	2 cut(s)	465, 843
BmgT120I	GGNCC	2 cut(s)	465, 843
BmiI	GGNNCC	2 cut(s)	466, 497
BmsI	GCATC	2 cut(s)	343, 556
BpiI	GAAGAC	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	653
BsaXI	ACNNNNNCTCC	4 cut(s)	414, 444, 863, 893
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 411, 478
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	643, 871
Bse3DI	GCAATG	2 cut(s)	29, 196
BseAI	TCCGGA	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	2 cut(s)	442, 487
BseLI	CCNNNNNNNGG	3 cut(s)	286, 411, 478
BseMI	GCAATG	2 cut(s)	29, 196
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	643, 871
BseRI	GAGGAG	4 cut(s)	169, 330, 394, 868
BseXI	GCAGC	5 cut(s)	339, 412, 529, 724, 736
BsgI	GTGCAG	2 cut(s)	693, 723
BshFI	GGCC	4 cut(s)	195, 415, 597, 665
BshNI	GGYRCC	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	219, 654
BslFI	GGGAC	2 cut(s)	478, 540
BslI	CCNNNNNNNGG	3 cut(s)	286, 411, 478
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	2 cut(s)	478, 540
BsnI	GGCC	4 cut(s)	195, 415, 597, 665
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp13I	TCCGGA	1 cut(s)	653
Bsp143I	GATC	2 cut(s)	207, 778
BspANI	GGCC	4 cut(s)	195, 415, 597, 665
BspCNI	CTCAG	1 cut(s)	356
BspEI	TCCGGA	1 cut(s)	653
BspLI	GGNNCC	2 cut(s)	466, 497
BspT107I	GGYRCC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	587
BsrDI	GCAATG	2 cut(s)	29, 196
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	643, 871
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	207, 778
BssSI	CACGAG	1 cut(s)	679
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	679
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	412
BstAFI	CTTAAG	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	325, 735, 754
BstDEI	CTNAG	2 cut(s)	343, 819
BstENI	CCTNNNNNAGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	442, 487
BstKTI	GATC	2 cut(s)	210, 781
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	207, 778
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 353, 519, 707, 746
BstV1I	GCAGC	5 cut(s)	339, 412, 529, 724, 736
BstV2I	GAAGAC	1 cut(s)	681
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	4 cut(s)	195, 415, 597, 665
BtsCI	GGATG	2 cut(s)	442, 487
BtsI	GCAGTG	2 cut(s)	695, 763
BtsIMutI	CAGTG	4 cut(s)	223, 695, 763, 864
Cac8I	GCNNGC	3 cut(s)	325, 735, 754
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	465, 843
Csp6I	GTAC	3 cut(s)	249, 496, 646
CviAII	CATG	2 cut(s)	276, 835
CviQI	GTAC	3 cut(s)	249, 496, 646
DdeI	CTNAG	2 cut(s)	343, 819
DpnI	GATC	2 cut(s)	209, 780
DpnII	GATC	2 cut(s)	207, 778
EaeI	YGGCCR	2 cut(s)	193, 663
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	862
Eco47I	GGWCC	2 cut(s)	465, 843
Eco57I	CTGAAG	1 cut(s)	681
EcoNI	CCTNNNNNAGG	1 cut(s)	409
EcoRV	GATATC	1 cut(s)	862
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	279, 838
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	2 cut(s)	478, 540
FatI	CATG	2 cut(s)	275, 834
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	328, 426, 543, 738, 750
FokI	GGATG	2 cut(s)	449, 494
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	5 cut(s)	328, 426, 543, 738, 750
FspBI	CTAG	2 cut(s)	53, 898
GluI	GCNGC	5 cut(s)	328, 426, 543, 738, 750
HaeIII	GGCC	4 cut(s)	195, 415, 597, 665
HapII	CCGG	2 cut(s)	219, 654
Hin1II	CATG	2 cut(s)	279, 838
HinfI	GANTC	2 cut(s)	677, 889
HpaII	CCGG	2 cut(s)	219, 654
Hpy166II	GTNNAC	4 cut(s)	163, 532, 648, 693
Hpy188III	TCNNGA	5 cut(s)	504, 563, 654, 671, 886
Hpy8I	GTNNAC	4 cut(s)	163, 532, 648, 693
HpyAV	CCTTC	2 cut(s)	110, 806
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	6 cut(s)	77, 356, 491, 710, 740, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 353, 519, 707, 746
HpyF3I	CTNAG	2 cut(s)	343, 819
Hsp92II	CATG	2 cut(s)	279, 838
Kpn2I	TCCGGA	1 cut(s)	653
KpnI	GGTACC	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	207, 778
LmnI	GCTCC	2 cut(s)	422, 881
Lsp1109I	GCAGC	5 cut(s)	339, 412, 529, 724, 736
LweI	GCATC	2 cut(s)	343, 556
MaeI	CTAG	2 cut(s)	53, 898
MaeIII	GTNAC	2 cut(s)	221, 227
MalI	GATC	2 cut(s)	209, 780
MboI	GATC	2 cut(s)	207, 778
MboII	GAAGA	2 cut(s)	399, 686
MhlI	GDGCHC	1 cut(s)	263
MlsI	TGGCCA	2 cut(s)	195, 665
MluCI	AATT	4 cut(s)	84, 148, 155, 441
MluNI	TGGCCA	2 cut(s)	195, 665
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	556
Mox20I	TGGCCA	2 cut(s)	195, 665
MroI	TCCGGA	1 cut(s)	653
MroXI	GAANNNNTTC	1 cut(s)	386
MscI	TGGCCA	2 cut(s)	195, 665
MseI	TTAA	2 cut(s)	294, 588
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	2 cut(s)	195, 665
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	2 cut(s)	219, 654
MwoI	GCNNNNNNNGC	5 cut(s)	68, 353, 519, 707, 746
NdeII	GATC	2 cut(s)	207, 778
NlaIII	CATG	2 cut(s)	279, 838
NlaIV	GGNNCC	2 cut(s)	466, 497
NmuCI	GTSAC	2 cut(s)	221, 227
PceI	AGGCCT	1 cut(s)	597
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	889
PkrI	GCNGC	5 cut(s)	329, 427, 544, 739, 751
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
PspN4I	GGNNCC	2 cut(s)	466, 497
PspPI	GGNCC	2 cut(s)	465, 843
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	3 cut(s)	250, 497, 647
RsaNI	GTAC	3 cut(s)	249, 496, 646
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	294, 588
SatI	GCNGC	5 cut(s)	328, 426, 543, 738, 750
Sau3AI	GATC	2 cut(s)	207, 778
Sau96I	GGNCC	2 cut(s)	465, 843
SchI	GAGTC	1 cut(s)	671
SduI	GDGCHC	1 cut(s)	263
SfaNI	GCATC	2 cut(s)	343, 556
SinI	GGWCC	2 cut(s)	465, 843
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	587, 744
SmoI	CTYRAG	2 cut(s)	587, 744
Sse9I	AATT	4 cut(s)	84, 148, 155, 441
SseBI	AGGCCT	1 cut(s)	597
SspMI	CTAG	2 cut(s)	53, 898
StuI	AGGCCT	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	1 cut(s)	672
TaqII	GACCGA	1 cut(s)	482
TasI	AATT	4 cut(s)	84, 148, 155, 441
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	1 cut(s)	889
Tru1I	TTAA	2 cut(s)	294, 588
Tru9I	TTAA	2 cut(s)	294, 588
TscAI	CASTG	4 cut(s)	230, 695, 763, 871
TseFI	GTSAC	2 cut(s)	221, 227
TseI	GCWGC	5 cut(s)	327, 425, 542, 737, 749
Tsp45I	GTSAC	2 cut(s)	221, 227
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	4 cut(s)	230, 695, 763, 871
Vha464I	CTTAAG	1 cut(s)	587
VpaK11BI	GGWCC	2 cut(s)	465, 843
XagI	CCTNNNNNAGG	1 cut(s)	409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	2 cut(s)	53, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.