Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Reverse (-)

53424596 .. 53425126

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG391800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTACTTGTGGAACAACTTCTTGGGAGGACAGTCGTCATCCAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTTGATATTGAAGGAGGAACTGATCAACATTGGGATGACCTCGCTAGGTACCTTTCTGGTTACAGCAAGAAGGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTAAACACAGGCCTCTTCGATTTTGTTTGGGTACAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGTGATGTTTCAAATCTTGAAGATGCTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCTCAAGCTGCTGGCAGTGGATTTATTCCTGCAGCTGATCTCAACTCACAAGTCCTTCCGGCTATCAAGAATTCGGCAAAATATGGAGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTAGATGGATACAGCTCTTCCATCAAGAATGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

176

Amino Acids

19.25

Weight (kDa)

4.65

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	18 - 124	1.3e-10	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	442
AfaI	GTAC	4 cut(s)	5, 128, 249, 278
AgsI	TTSAA	3 cut(s)	89, 297, 305
AjnI	CCWGG	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	380, 407, 507
AluI	AGCT	3 cut(s)	380, 407, 507
AoxI	GGCC	2 cut(s)	44, 226
ApeKI	GCWGC	4 cut(s)	173, 368, 380, 404
ApoI	RAATTY	1 cut(s)	442
Asp700I	GAANNNNTTC	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	160, 355, 367, 416
BccI	CCATC	3 cut(s)	62, 491, 521
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	494
BclI	TGATCA	1 cut(s)	100
BfaI	CTAG	3 cut(s)	123, 494, 529
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	494
BisI	GCNGC	4 cut(s)	174, 369, 381, 405
BlsI	GCNGC	4 cut(s)	175, 370, 382, 406
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	3 cut(s)	46, 187, 298
BoxI	GACNNNNGTC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 160, 190
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	43
BseGI	GGATG	3 cut(s)	38, 73, 118
BseMI	GCAATG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	4 cut(s)	160, 355, 367, 416
BsgI	GTGCAG	2 cut(s)	324, 354
BshFI	GGCC	2 cut(s)	46, 228
BshNI	GGYRCC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	2 cut(s)	46, 228
Bsp143I	GATC	3 cut(s)	100, 409, 490
BspANI	GGCC	2 cut(s)	46, 228
BspLI	GGNNCC	1 cut(s)	128
BspMAI	CTGCAG	1 cut(s)	406
BspQI	GCTCTTC	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	274
BssMI	GATC	3 cut(s)	100, 409, 490
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	33, 183
Bst6I	CTCTTC	2 cut(s)	236, 514
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	1 cut(s)	355
BstF5I	GGATG	3 cut(s)	38, 73, 118
BstKTI	GATC	3 cut(s)	103, 412, 493
BstMBI	GATC	3 cut(s)	100, 409, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 338, 377
BstNI	CCWGG	1 cut(s)	43
BstPAI	GACNNNNGTC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	4 cut(s)	160, 355, 367, 416
BstXI	CCANNNNNNTGG	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	46, 228
BtsCI	GGATG	3 cut(s)	38, 73, 118
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	188, 394
Cac8I	GCNNGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	474
Csp6I	GTAC	4 cut(s)	4, 127, 248, 277
CviAII	CATG	1 cut(s)	466
CviJI	RGCY	6 cut(s)	46, 228, 380, 407, 434, 507
CviKI_1	RGCY	6 cut(s)	46, 228, 380, 407, 434, 507
CviQI	GTAC	4 cut(s)	4, 127, 248, 277
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	3 cut(s)	102, 411, 492
DpnII	GATC	3 cut(s)	100, 409, 490
Eam1104I	CTCTTC	2 cut(s)	236, 514
EarI	CTCTTC	2 cut(s)	236, 514
Eco147I	AGGCCT	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	469
FaiI	YATR	5 cut(s)	204, 345, 456, 467, 486
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	1 cut(s)	465
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	4 cut(s)	174, 369, 381, 405
FokI	GGATG	3 cut(s)	25, 80, 125
Fsp4HI	GCNGC	4 cut(s)	174, 369, 381, 405
FspBI	CTAG	3 cut(s)	123, 494, 529
GluI	GCNGC	4 cut(s)	174, 369, 381, 405
HaeIII	GGCC	2 cut(s)	46, 228
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	3 cut(s)	76, 163, 279
Hpy188III	TCNNGA	5 cut(s)	194, 302, 439, 494, 517
Hpy8I	GTNNAC	3 cut(s)	76, 163, 279
HpyAV	CCTTC	3 cut(s)	83, 142, 437
HpyCH4III	ACNGT	2 cut(s)	33, 183
HpyCH4V	TGCA	4 cut(s)	215, 341, 371, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 338, 377
HpyF3I	CTNAG	1 cut(s)	355
Hsp92II	CATG	1 cut(s)	469
KpnI	GGTACC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	100, 409, 490
LguI	GCTCTTC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	4 cut(s)	160, 355, 367, 416
LweI	GCATC	3 cut(s)	46, 187, 298
MaeI	CTAG	3 cut(s)	123, 494, 529
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	3 cut(s)	102, 411, 492
MboI	GATC	3 cut(s)	100, 409, 490
MboII	GAAGA	3 cut(s)	223, 317, 501
MluCI	AATT	2 cut(s)	251, 442
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	7 cut(s)	20, 86, 128, 239, 276, 384, 452
MroXI	GAANNNNTTC	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	150, 338, 377
NdeII	GATC	3 cut(s)	100, 409, 490
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	175, 370, 382, 406
PshAI	GACNNNNGTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	4 cut(s)	5, 128, 249, 278
RsaNI	GTAC	4 cut(s)	4, 127, 248, 277
RseI	CAYNNNNRTG	1 cut(s)	111
SapI	GCTCTTC	1 cut(s)	514
SatI	GCNGC	4 cut(s)	174, 369, 381, 405
Sau3AI	GATC	3 cut(s)	100, 409, 490
Sau96I	GGNCC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	8 cut(s)	120, 128, 132, 376, 382, 409, 463, 509
SfaNI	GCATC	3 cut(s)	46, 187, 298
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	2 cut(s)	251, 442
SseBI	AGGCCT	1 cut(s)	228
SspMI	CTAG	3 cut(s)	123, 494, 529
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	33, 183
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	251, 442
TatI	WGTACW	2 cut(s)	3, 276
TscAI	CASTG	2 cut(s)	188, 394
TseI	GCWGC	4 cut(s)	173, 368, 380, 404
TspRI	CASTG	2 cut(s)	188, 394
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	1 cut(s)	442
XbaI	TCTAGA	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	3 cut(s)	123, 494, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.