Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Forward (+)

12564519 .. 12564905

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG152600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAGAATACATCAAGATGAGAATACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTCAACACAGGCCTCTTCGACTTTGTTTGGGTACAGTTCTACAACAACCCTCCTTGCCAGTACACATCTGGTGATATTTCAAATCTCGAAGATGGTTGGAAGCAATGGACTTCCGCCATTCCTGCACATAAGATTTTCTTAGGACTTCTTGCTGCACCCCAAGCTGCTGGTAGTGGATTTATTCCAGCGGCTGATCTCAACTCACAAGTCCTTCCGGCTATCAAGAATTCAGCTAAATATGGAGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTAGATGGATACAGCTCTTCCATCAAGAATGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

128

Amino Acids

14.02

Weight (kDa)

4.6

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	186, 260
AcsI	RAATTY	1 cut(s)	298
AfaI	GTAC	2 cut(s)	105, 134
AgsI	TTSAA	1 cut(s)	153
AluBI	AGCT	3 cut(s)	236, 305, 363
AluI	AGCT	3 cut(s)	236, 305, 363
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	3 cut(s)	29, 224, 236
ApoI	RAATTY	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	16, 211, 223
BccI	CCATC	3 cut(s)	158, 347, 377
BciVI	GTATCC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	350, 385
BfuI	GTATCC	1 cut(s)	350
BisI	GCNGC	4 cut(s)	30, 225, 237, 261
BlsI	GCNGC	4 cut(s)	31, 226, 238, 262
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmsI	GCATC	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	16, 211, 223
BsgI	GTGCAG	2 cut(s)	180, 210
BshFI	GGCC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	265, 346
BspACI	CCGC	2 cut(s)	186, 260
BspANI	GGCC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	265, 346
Bst4CI	ACNGT	2 cut(s)	39, 108
Bst6I	CTCTTC	2 cut(s)	92, 370
BstDEI	CTNAG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	268, 349
BstMBI	GATC	2 cut(s)	265, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 233
BstV1I	GCAGC	3 cut(s)	16, 211, 223
BstXI	CCANNNNNNTGG	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	104, 133
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	6 cut(s)	84, 236, 263, 290, 305, 363
CviKI_1	RGCY	6 cut(s)	84, 236, 263, 290, 305, 363
CviQI	GTAC	2 cut(s)	104, 133
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	2 cut(s)	267, 348
DpnII	GATC	2 cut(s)	265, 346
Eam1104I	CTCTTC	2 cut(s)	92, 370
EarI	CTCTTC	2 cut(s)	92, 370
EciI	GGCGGA	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	298
FaeI	CATG	1 cut(s)	325
FaiI	YATR	5 cut(s)	60, 201, 312, 323, 342
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	30, 225, 237, 261
Fsp4HI	GCNGC	4 cut(s)	30, 225, 237, 261
FspBI	CTAG	2 cut(s)	350, 385
GluI	GCNGC	4 cut(s)	30, 225, 237, 261
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	1 cut(s)	325
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188III	TCNNGA	6 cut(s)	14, 50, 158, 295, 350, 373
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	39, 108
HpyCH4V	TGCA	3 cut(s)	71, 197, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 233
HpyF3I	CTNAG	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	265, 346
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	63, 66, 126, 143, 207, 225, 270, 300
Lsp1109I	GCAGC	3 cut(s)	16, 211, 223
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	350, 385
MalI	GATC	2 cut(s)	267, 348
MboI	GATC	2 cut(s)	265, 346
MboII	GAAGA	3 cut(s)	79, 173, 357
MluCI	AATT	1 cut(s)	298
MmeI	TCCRAC	2 cut(s)	43, 149
MnlI	CCTC	3 cut(s)	95, 132, 308
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	194, 233
NdeII	GATC	2 cut(s)	265, 346
NlaIII	CATG	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	370
PkrI	GCNGC	4 cut(s)	31, 226, 238, 262
PspPI	GGNCC	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	105, 134
RsaNI	GTAC	2 cut(s)	104, 133
RseI	CAYNNNNRTG	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	370
SatI	GCNGC	4 cut(s)	30, 225, 237, 261
Sau3AI	GATC	2 cut(s)	265, 346
Sau96I	GGNCC	1 cut(s)	330
SetI	ASST	4 cut(s)	238, 307, 319, 365
SfaNI	GCATC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	298
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	2 cut(s)	186, 260
SspMI	CTAG	2 cut(s)	350, 385
StuI	AGGCCT	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	39, 108
TaqI	TCGA	2 cut(s)	90, 159
TasI	AATT	1 cut(s)	298
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	263
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	3 cut(s)	29, 224, 236
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	298
XbaI	TCTAGA	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XspI	CTAG	2 cut(s)	350, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.