FvH4_7g30230

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000601
Physical Location & Seq
Forward (+)
22083689 .. 22084588
900 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30230.t1

Sequence Viewer

Length: 900 bp
ATGGCTTCAGTTTCTGCAGCAGCATTGCTATCTTTAGCAACACTGCTACTTCTGGCAGTTGGTTCTAATGCAGGAGGTATCGCGATTTACTGGGGACAGAATGGAAATGAGGGCACATTAGCACAGACTTGTGCCTCAGGGAACTACCAATTTGTGAACATAGCTTTCCTCTCATCGTTTGGCAATGGCCGGACCCCTACCTTAAACCTGGCGGGTCACTGTGATCCGTCTAGCAATACATGCACCAAGTTCAGCTCGCAGATCAAGTCGTGCCAAGCCGAAGGCATCAAGGTCATATTGTCTATTGGGGGAGGCTGGGGAGGACAATACTCTCTAGCTTCATCAGAAGATGCCCGCCAAGTTGGTGCTTATTTGTGGAACAACTTCTTGGGAGGACACTCCACTTCAAGGCCATTAGGAGATGCTGTTTTGGATGGAGTTGATTTCGACATTGAAGGAGGGAATGATCAGTACTGGGATGACCTTGCTAGGTACCTTTCGGCGCATAGCAAGAAGGGCGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTAATATTGGAAATGCACTTAAGACAGGCCTATTTGACAATGTTTGGGTTCAATTCTACAACAACCCTCCTTGTCAGTACACTTCTGGTAATGTCACCAATCTCGAAGATGCTTGGAAGCAATGGACTTCAGCCATTCCTGCACAGCAGATCTTCTTAGGACTCCCTGCGGCGCCTGAAGCTGCTGGTAGCGGATTCATTCCTGCTGCTGCGCTCACTACAACAGTCCTTCCGGGGATCAAAACTTCAGATAAATATGGCGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTTGATGGATACAGCTCCTCAATCAAGAATCATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

300

Amino Acids

31.56

Weight (kDa)

5.28

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 27 - 247 3.8e-21 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 492
AccB1I GGYRCC 2 cut(s) 492, 739
AccII CGCG 1 cut(s) 83
AciI CCGC 6 cut(s) 212, 355, 519, 737, 759, 828
AclWI GGATC 2 cut(s) 218, 812
AcoI YGGCCR 1 cut(s) 187
AcuI CTGAAG 3 cut(s) 681, 765, 798
AcyI GRCGYC 1 cut(s) 740
AfaI GTAC 3 cut(s) 473, 494, 647
AfiI CCNNNNNNNGG 1 cut(s) 408
AflII CTTAAG 1 cut(s) 587
AgsI TTSAA 3 cut(s) 408, 455, 620
AjnI CCWGG 1 cut(s) 207
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 5 cut(s) 164, 255, 338, 749, 876
AluI AGCT 5 cut(s) 164, 255, 338, 749, 876
AlwI GGATC 2 cut(s) 218, 812
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 3 cut(s) 187, 410, 595
ApeKI GCWGC 6 cut(s) 17, 20, 542, 749, 773, 776
Asp700I GAANNNNTTC 1 cut(s) 383
Asp718I GGTACC 1 cut(s) 492
AspLEI GCGC 3 cut(s) 505, 742, 781
AspS9I GGNCC 2 cut(s) 192, 843
AsuC2I CCSGG 1 cut(s) 801
AsuHPI GGTGA 1 cut(s) 655
AvaII GGWCC 2 cut(s) 192, 843
AxyI CCTNAGG 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 492, 739
BbvI GCAGC 6 cut(s) 29, 32, 529, 736, 760, 763
BccI CCATC 2 cut(s) 428, 860
BciT130I CCWGG 1 cut(s) 209
BciVI GTATCC 1 cut(s) 863
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 1 cut(s) 801
BfaI CTAG 4 cut(s) 231, 335, 489, 898
BfmI CTRYAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 743
BfrI CTTAAG 1 cut(s) 587
BfuI GTATCC 1 cut(s) 863
BglII AGATCT 1 cut(s) 717
BisI GCNGC 8 cut(s) 18, 21, 520, 543, 738, 750, 774, 777
BlsI GCNGC 8 cut(s) 19, 22, 521, 544, 739, 751, 775, 778
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 2 cut(s) 209, 801
Bme18I GGWCC 2 cut(s) 192, 843
BmgT120I GGNCC 2 cut(s) 192, 843
BmiI GGNNCC 3 cut(s) 194, 494, 741
BmrFI CCNGG 2 cut(s) 209, 801
BmrI ACTGGG 2 cut(s) 100, 484
BmsI GCATC 5 cut(s) 294, 340, 412, 556, 667
BmuI ACTGGG 2 cut(s) 100, 484
BpuMI CCSGG 1 cut(s) 801
BsaHI GRCGYC 1 cut(s) 740
BsaJI CCNNGG 1 cut(s) 800
BsaXI ACNNNNNCTCC 4 cut(s) 411, 441, 529, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse1I ACTGG 2 cut(s) 95, 479
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 3 cut(s) 23, 190, 695
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 800
BseGI GGATG 2 cut(s) 439, 484
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMI GCAATG 3 cut(s) 23, 190, 695
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 95, 479
BseRI GAGGAG 1 cut(s) 868
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 6 cut(s) 29, 32, 529, 736, 760, 763
BseYI CCCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 189, 412, 597
BshNI GGYRCC 2 cut(s) 492, 739
BsiSI CCGG 2 cut(s) 190, 800
BslFI GGGAC 2 cut(s) 108, 540
BslI CCNNNNNNNGG 1 cut(s) 408
BsmFI GGGAC 2 cut(s) 108, 540
BsnI GGCC 3 cut(s) 189, 412, 597
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 6 cut(s) 223, 261, 466, 717, 804, 859
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 6 cut(s) 212, 355, 519, 737, 759, 828
BspANI GGCC 3 cut(s) 189, 412, 597
BspCNI CTCAG 1 cut(s) 149
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 3 cut(s) 194, 494, 741
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 2 cut(s) 218, 812
BspT107I GGYRCC 2 cut(s) 492, 739
BspTI CTTAAG 1 cut(s) 587
BsrDI GCAATG 3 cut(s) 23, 190, 695
BsrI ACTGG 2 cut(s) 95, 479
BssECI CCNNGG 1 cut(s) 800
BssMI GATC 6 cut(s) 223, 261, 466, 717, 804, 859
BssNI GRCGYC 1 cut(s) 740
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 3 cut(s) 221, 552, 793
BstACI GRCGYC 1 cut(s) 740
BstAFI CTTAAG 1 cut(s) 587
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 257, 355
BstDEI CTNAG 2 cut(s) 136, 724
BstF5I GGATG 2 cut(s) 439, 484
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 743
BstHHI GCGC 3 cut(s) 505, 742, 781
BstKTI GATC 6 cut(s) 226, 264, 469, 720, 807, 862
BstMBI GATC 6 cut(s) 223, 261, 466, 717, 804, 859
BstMWI GCNNNNNNNGC 4 cut(s) 240, 516, 707, 746
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 207, 799
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 6 cut(s) 29, 32, 529, 736, 760, 763
BstX2I RGATCY 1 cut(s) 717
BstYI RGATCY 1 cut(s) 717
Bsu36I CCTNAGG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 863
BsuRI GGCC 3 cut(s) 189, 412, 597
BtsCI GGATG 2 cut(s) 439, 484
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 3 cut(s) 41, 217, 557
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 257, 355
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 3 cut(s) 505, 742, 781
Cfr13I GGNCC 2 cut(s) 192, 843
Csp6I GTAC 3 cut(s) 472, 493, 646
CviAII CATG 3 cut(s) 240, 835, 893
CviQI GTAC 3 cut(s) 472, 493, 646
DdeI CTNAG 2 cut(s) 136, 724
DinI GGCGCC 1 cut(s) 741
DpnI GATC 6 cut(s) 225, 263, 468, 719, 806, 861
DpnII GATC 6 cut(s) 223, 261, 466, 717, 804, 859
EaeI YGGCCR 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 597
Eco47I GGWCC 2 cut(s) 192, 843
Eco57I CTGAAG 3 cut(s) 681, 765, 798
Eco81I CCTNAGG 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 741
EheI GGCGCC 1 cut(s) 741
FaeI CATG 3 cut(s) 243, 838, 896
FaiI YATR 8 cut(s) 161, 241, 296, 507, 825, 836, 855, 894
FaqI GGGAC 2 cut(s) 108, 540
FatI CATG 3 cut(s) 239, 834, 892
FauI CCCGC 2 cut(s) 205, 362
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 8 cut(s) 18, 21, 520, 543, 738, 750, 774, 777
FokI GGATG 2 cut(s) 446, 491
Fsp4HI GCNGC 8 cut(s) 18, 21, 520, 543, 738, 750, 774, 777
FspBI CTAG 4 cut(s) 231, 335, 489, 898
GlaI GCGC 3 cut(s) 504, 741, 780
GluI GCNGC 8 cut(s) 18, 21, 520, 543, 738, 750, 774, 777
GsaI CCCAGC 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 743
HaeIII GGCC 3 cut(s) 189, 412, 597
HapII CCGG 2 cut(s) 190, 800
HhaI GCGC 3 cut(s) 505, 742, 781
Hin1I GRCGYC 1 cut(s) 740
Hin1II CATG 3 cut(s) 243, 838, 896
Hin6I GCGC 3 cut(s) 503, 740, 779
HinP1I GCGC 3 cut(s) 503, 740, 779
HinfI GANTC 3 cut(s) 729, 762, 889
HpaII CCGG 2 cut(s) 190, 800
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 3 cut(s) 157, 532, 648
Hpy188I TCNGA 2 cut(s) 346, 817
Hpy188III TCNNGA 5 cut(s) 82, 563, 671, 863, 886
Hpy8I GTNNAC 3 cut(s) 157, 532, 648
HpyAV CCTTC 4 cut(s) 275, 449, 508, 806
HpyCH4III ACNGT 3 cut(s) 221, 552, 793
HpyCH4V TGCA 5 cut(s) 17, 71, 243, 584, 710
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 516, 707, 746
HpyF3I CTNAG 2 cut(s) 136, 724
Hsp92I GRCGYC 1 cut(s) 740
Hsp92II CATG 3 cut(s) 243, 838, 896
HspAI GCGC 3 cut(s) 503, 740, 779
KasI GGCGCC 1 cut(s) 739
KpnI GGTACC 1 cut(s) 496
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 6 cut(s) 223, 261, 466, 717, 804, 859
LmnI GCTCC 2 cut(s) 550, 881
Lsp1109I GCAGC 6 cut(s) 29, 32, 529, 736, 760, 763
LweI GCATC 5 cut(s) 294, 340, 412, 556, 667
MaeI CTAG 4 cut(s) 231, 335, 489, 898
MaeIII GTNAC 2 cut(s) 215, 661
MalI GATC 6 cut(s) 225, 263, 468, 719, 806, 861
MboI GATC 6 cut(s) 223, 261, 466, 717, 804, 859
MboII GAAGA 3 cut(s) 359, 686, 712
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 2 cut(s) 149, 620
Mly113I GGCGCC 1 cut(s) 740
MlyI GAGTC 1 cut(s) 723
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 2 cut(s) 203, 588
MspCI CTTAAG 1 cut(s) 587
MspI CCGG 2 cut(s) 190, 800
MspR9I CCNGG 2 cut(s) 209, 801
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 240, 516, 707, 746
NarI GGCGCC 1 cut(s) 740
NciI CCSGG 1 cut(s) 801
NdeII GATC 6 cut(s) 223, 261, 466, 717, 804, 859
NlaIII CATG 3 cut(s) 243, 838, 896
NlaIV GGNNCC 3 cut(s) 194, 494, 741
NmuCI GTSAC 2 cut(s) 215, 661
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 243
PceI AGGCCT 1 cut(s) 597
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 2 cut(s) 762, 889
PkrI GCNGC 8 cut(s) 19, 22, 521, 544, 739, 751, 775, 778
PleI GAGTC 1 cut(s) 723
PluTI GGCGCC 1 cut(s) 743
PpsI GAGTC 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 194, 494, 741
PspPI GGNCC 2 cut(s) 192, 843
PstI CTGCAG 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 717
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 3 cut(s) 473, 494, 647
RsaNI GTAC 3 cut(s) 472, 493, 646
SaqAI TTAA 2 cut(s) 203, 588
SatI GCNGC 8 cut(s) 18, 21, 520, 543, 738, 750, 774, 777
Sau3AI GATC 6 cut(s) 223, 261, 466, 717, 804, 859
Sau96I GGNCC 2 cut(s) 192, 843
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 1 cut(s) 723
ScrFI CCNGG 2 cut(s) 209, 801
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 5 cut(s) 294, 340, 412, 556, 667
SfcI CTRYAG 1 cut(s) 15
SfoI GGCGCC 1 cut(s) 741
SinI GGWCC 2 cut(s) 192, 843
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
Sse9I AATT 2 cut(s) 149, 620
SseBI AGGCCT 1 cut(s) 597
SsiI CCGC 6 cut(s) 212, 355, 519, 737, 759, 828
SspDI GGCGCC 1 cut(s) 739
SspI AATATT 1 cut(s) 574
SspMI CTAG 4 cut(s) 231, 335, 489, 898
StuI AGGCCT 1 cut(s) 597
StyD4I CCNGG 2 cut(s) 207, 799
TaaI ACNGT 3 cut(s) 221, 552, 793
TaqI TCGA 2 cut(s) 447, 672
TasI AATT 2 cut(s) 149, 620
TatI WGTACW 2 cut(s) 471, 645
TauI GCSGC 2 cut(s) 522, 740
TfiI GAWTC 2 cut(s) 762, 889
Tru1I TTAA 2 cut(s) 203, 588
Tru9I TTAA 2 cut(s) 203, 588
TscAI CASTG 3 cut(s) 48, 224, 557
TseFI GTSAC 2 cut(s) 215, 661
TseI GCWGC 6 cut(s) 17, 20, 542, 749, 773, 776
Tsp45I GTSAC 2 cut(s) 215, 661
TspDTI ATGAA 2 cut(s) 330, 754
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 3 cut(s) 48, 224, 557
Vha464I CTTAAG 1 cut(s) 587
VpaK11BI GGWCC 2 cut(s) 192, 843
XceI RCATGY 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 4 cut(s) 231, 335, 489, 898
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.