RchiOBHm_Chr1g0358211

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000601
Physical Location & Seq
Forward (+)
50255995 .. 50256738
744 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58338

Sequence Viewer

Length: 744 bp
ATGACTGTGAACATAGCTTTTCTCCCAACATTCGGCAATGGCCAAACTCCCATGATAAACCTAGCCGGACATTGTGATCCTTCCACTAATGGCTGCACCGGTTTGAGCTCCGACATTAAGTCGTGCCAAGCAAAAGGGGTCAAGGTGATTCTTTCGATCGGAGGAGGAGCAGGGAGCTACTACCTCACATCTAAAGAGGATGCCAGGCAGGTTGCAATCTATTTGTGGAACAATTTCTTGGGAGGAACTTCATCTTCTCGCCCTCTTGGTGACGCTGTTTTGGATGGAATTGATTTTGATATCGAGGGAGGAACAAACCTACATTGGGATGACCTCGCTACGTTCCTCTCTGCATACAGCAACCAAGGTAAGAAGGTTTACTTGACCGCAGCGCCCCAGTGCCCTTTCCCTGATGCTTGGGTTGGAGGTGCCCTCAAGACGGGCCTTTTTGACTACGTTTGGGTCCAATTCTACAACAACCCTCCATGCCAATACTCGGCCGATATCAGCAACCTTGTAAGTGCATGGAATCAGTGGGATTCCGATATTCCGGCCACCAAGATATTCCTTGGTCTACCAGCTGCTCCTGAAGCTGCTGGAAGTGGCTTTATTCCTGTCAATGATCTCACTTCTAAAGTGCTTCCAGCAATTAAAGGTTCGTCCAAGTATGGAGGGGTCATGCTTTGGTCCAAGTATTATGATGATCAGACTAAATACAGTGCTTCCATCAAGAACTACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

247

Amino Acids

26.49

Weight (kDa)

5.04

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 3 - 195 4.5e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 574
AciI CCGC 1 cut(s) 387
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 3 cut(s) 40, 498, 552
AcuI CTGAAG 1 cut(s) 609
AfiI CCNNNNNNNGG 4 cut(s) 32, 325, 439, 496
AgeI ACCGGT 1 cut(s) 98
AhdI GACNNNNNGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 5 cut(s) 17, 108, 177, 581, 593
AluI AGCT 5 cut(s) 17, 108, 177, 581, 593
Alw21I GWGCWC 1 cut(s) 110
AlwI GGATC 1 cut(s) 71
AoxI GGCC 4 cut(s) 40, 442, 498, 552
ApeKI GCWGC 4 cut(s) 93, 389, 581, 593
AsiGI ACCGGT 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 3 cut(s) 442, 463, 687
AsuHPI GGTGA 2 cut(s) 157, 281
AvaII GGWCC 2 cut(s) 463, 687
BaeGI GKGCMC 2 cut(s) 404, 433
BalI TGGCCA 1 cut(s) 42
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 4 cut(s) 80, 401, 568, 580
BccI CCATC 2 cut(s) 278, 734
BciT130I CCWGG 1 cut(s) 205
BclI TGATCA 1 cut(s) 703
BfaI CTAG 2 cut(s) 62, 742
BfoI RGCGCY 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 4 cut(s) 94, 390, 582, 594
BlsI GCNGC 4 cut(s) 95, 391, 583, 595
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 2 cut(s) 463, 687
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgT120I GGNCC 3 cut(s) 442, 463, 687
BmiI GGNNCC 2 cut(s) 430, 464
BmrFI CCNGG 1 cut(s) 205
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 2 cut(s) 190, 403
BmuI ACTGGG 1 cut(s) 391
BplI GAGNNNNNCTC 2 cut(s) 417, 449
BpuEI CTTGAG 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 364, 568
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 325, 439, 496
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 364, 568
BseGI GGATG 3 cut(s) 205, 289, 334
BseLI CCNNNNNNNGG 4 cut(s) 32, 325, 439, 496
BseMI GCAATG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 2 cut(s) 177, 180
BseSI GKGCMC 2 cut(s) 404, 433
BseX3I CGGCCG 1 cut(s) 498
BseXI GCAGC 4 cut(s) 80, 401, 568, 580
BsgI GTGCAG 1 cut(s) 79
Bsh1285I CGRYCG 2 cut(s) 159, 501
BshFI GGCC 4 cut(s) 42, 444, 500, 554
BshNI GGYRCC 1 cut(s) 428
BshTI ACCGGT 1 cut(s) 98
BsiEI CGRYCG 2 cut(s) 159, 501
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 3 cut(s) 66, 99, 551
BslI CCNNNNNNNGG 4 cut(s) 32, 325, 439, 496
BsnI GGCC 4 cut(s) 42, 444, 500, 554
Bsp1286I GDGCHC 3 cut(s) 110, 404, 433
Bsp143I GATC 4 cut(s) 76, 156, 622, 703
BspACI CCGC 1 cut(s) 387
BspANI GGCC 4 cut(s) 42, 444, 500, 554
BspLI GGNNCC 2 cut(s) 430, 464
BspMI ACCTGC 1 cut(s) 199
BspPI GGATC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 364, 568
BssMI GATC 4 cut(s) 76, 156, 622, 703
BssT1I CCWWGG 2 cut(s) 364, 568
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 7, 719
BstF5I GGATG 3 cut(s) 205, 289, 334
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 4 cut(s) 79, 159, 625, 706
BstMBI GATC 4 cut(s) 76, 156, 622, 703
BstMCI CGRYCG 2 cut(s) 159, 501
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstSLI GKGCMC 2 cut(s) 404, 433
BstV1I GCAGC 4 cut(s) 80, 401, 568, 580
BstZI CGGCCG 1 cut(s) 498
BsuRI GGCC 4 cut(s) 42, 444, 500, 554
BtsCI GGATG 3 cut(s) 205, 289, 334
BtsIMutI CAGTG 3 cut(s) 404, 539, 724
BveI ACCTGC 1 cut(s) 199
CfoI GCGC 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 3 cut(s) 442, 463, 687
CseI GACGC 1 cut(s) 281
CspAI ACCGGT 1 cut(s) 98
CviAII CATG 4 cut(s) 52, 486, 525, 679
DpnI GATC 4 cut(s) 78, 158, 624, 705
DpnII GATC 4 cut(s) 76, 156, 622, 703
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 3 cut(s) 40, 498, 552
EagI CGGCCG 1 cut(s) 498
Eam1105I GACNNNNNGTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 108
EclXI CGGCCG 1 cut(s) 498
Eco130I CCWWGG 2 cut(s) 364, 568
Eco24I GRGCYC 1 cut(s) 110
Eco32I GATATC 2 cut(s) 301, 505
Eco47I GGWCC 2 cut(s) 463, 687
Eco52I CGGCCG 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 203
EcoRV GATATC 2 cut(s) 301, 505
EcoT14I CCWWGG 2 cut(s) 364, 568
EcoT38I GRGCYC 1 cut(s) 110
ErhI CCWWGG 2 cut(s) 364, 568
FaeI CATG 4 cut(s) 55, 489, 528, 682
FaiI YATR 8 cut(s) 14, 53, 355, 487, 526, 669, 680, 699
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FatI CATG 4 cut(s) 51, 485, 524, 678
FbaI TGATCA 1 cut(s) 703
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 4 cut(s) 94, 390, 582, 594
FokI GGATG 3 cut(s) 212, 296, 341
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 4 cut(s) 94, 390, 582, 594
FspBI CTAG 2 cut(s) 62, 742
GlaI GCGC 1 cut(s) 393
GluI GCNGC 4 cut(s) 94, 390, 582, 594
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 4 cut(s) 42, 444, 500, 554
HapII CCGG 3 cut(s) 66, 99, 551
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 394
Hin1II CATG 4 cut(s) 55, 489, 528, 682
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HinfI GANTC 3 cut(s) 148, 529, 539
HpaII CCGG 3 cut(s) 66, 99, 551
HphI GGTGA 2 cut(s) 157, 281
Hpy166II GTNNAC 3 cut(s) 10, 379, 575
Hpy188I TCNGA 4 cut(s) 112, 161, 544, 708
Hpy188III TCNNGA 3 cut(s) 436, 587, 730
Hpy8I GTNNAC 3 cut(s) 10, 379, 575
HpyAV CCTTC 2 cut(s) 90, 367
HpyCH4III ACNGT 2 cut(s) 7, 719
HpyCH4IV ACGT 2 cut(s) 341, 456
HpyCH4V TGCA 4 cut(s) 96, 215, 353, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpySE526I ACGT 2 cut(s) 341, 456
Hsp92II CATG 4 cut(s) 55, 489, 528, 682
HspAI GCGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 4 cut(s) 76, 156, 622, 703
LmnI GCTCC 4 cut(s) 113, 167, 174, 589
Lsp1109I GCAGC 4 cut(s) 80, 401, 568, 580
LweI GCATC 2 cut(s) 190, 403
MaeI CTAG 2 cut(s) 62, 742
MaeII ACGT 2 cut(s) 341, 456
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 78, 158, 624, 705
MboI GATC 4 cut(s) 76, 156, 622, 703
MboII GAAGA 1 cut(s) 246
MhlI GDGCHC 3 cut(s) 110, 404, 433
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 4 cut(s) 232, 288, 467, 648
MluNI TGGCCA 1 cut(s) 42
MmeI TCCRAC 2 cut(s) 135, 403
Mox20I TGGCCA 1 cut(s) 42
MroXI GAANNNNTTC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 42
MseI TTAA 2 cut(s) 117, 651
MslI CAYNNNNRTG 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 3 cut(s) 66, 99, 551
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 590
NdeII GATC 4 cut(s) 76, 156, 622, 703
NlaIII CATG 4 cut(s) 55, 489, 528, 682
NlaIV GGNNCC 2 cut(s) 430, 464
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 3 cut(s) 148, 529, 539
PinAI ACCGGT 1 cut(s) 98
PkrI GCNGC 4 cut(s) 95, 391, 583, 595
Ple19I CGATCG 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 430, 464
PspPI GGNCC 3 cut(s) 442, 463, 687
PvuI CGATCG 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 581
RseI CAYNNNNRTG 1 cut(s) 327
SacI GAGCTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 117, 651
SatI GCNGC 4 cut(s) 94, 390, 582, 594
Sau3AI GATC 4 cut(s) 76, 156, 622, 703
Sau96I GGNCC 3 cut(s) 442, 463, 687
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 3 cut(s) 110, 404, 433
SfaNI GCATC 2 cut(s) 190, 403
SinI GGWCC 2 cut(s) 463, 687
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 4 cut(s) 232, 288, 467, 648
SsiI CCGC 1 cut(s) 387
SspMI CTAG 2 cut(s) 62, 742
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 2 cut(s) 364, 568
TaaI ACNGT 2 cut(s) 7, 719
TaiI ACGT 2 cut(s) 344, 459
TaqI TCGA 2 cut(s) 155, 303
TasI AATT 4 cut(s) 232, 288, 467, 648
TfiI GAWTC 3 cut(s) 148, 529, 539
Tru1I TTAA 2 cut(s) 117, 651
Tru9I TTAA 2 cut(s) 117, 651
TscAI CASTG 3 cut(s) 404, 539, 724
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 4 cut(s) 93, 389, 581, 593
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 3 cut(s) 404, 539, 724
VpaK11BI GGWCC 2 cut(s) 463, 687
XmiI GTMKAC 1 cut(s) 574
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 2 cut(s) 62, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.