RchiOBHm_Chr1g0358231

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000601
Physical Location & Seq
Forward (+)
50302413 .. 50303237
825 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58340

Sequence Viewer

Length: 825 bp
ATGCCGCAGGCATTGCGATTTACTGGGGGTCAAAAGGGGAATGAGGGTACCTTGGAAGAGACCTGTGCCACAGGCAACTATGACTATGTGAACATAGCTTTTCTCCCAACATTCGGCAATGGCCAGACTCCCATGATCAACCTAGCAGGACATTGTGATCCTTACACTAATGGCTGCACTAGTTTGAGCTCCGACATTAAGTCGTGCCAAGAAAAAGGGGTCAAGGTGATTCTTTCGATAGGAGGAGGAGTAGGGAGCTACTACCTCACATCTAAAGAGGATGCTAGGCAGGTTGCAATCTATTTGTGGAACAATTTCTTGGGAGGAACTTCATCTTCTCGCCCTCTTGGTGACGCTGTTTTGGATGGAATTGATTTTGATATCGAGGGAGGAACAAACCTACATTGGGATGACCTCGCTACATTCCTCTCTGCATACAGTAAAAAGGGTAAGAAGGTTTACTTGACCGCAGCGCCCCAGTGCCCTTTCCCTGATGCTTGGGTTGGAGGTGCCCTCAAGACGGGCCTTTTCGACTACGTTTGGGTCCAATTCTATAACAACCCTCCATGCCAATACTCGGCCGATCTCAGCAACCTTGTAAGTGCATGGAAGCAGTGGGTTTCCGATATTCCGGCCACCAAGATATTCCTTGGTCTACCAGCTGCTCCTGAAGCTGCTGGAAGTGGCTTTATTCCTGTCAATGATCTCACTTCTAAAGTGCTTCCAGCTATTAAAGGTACGTCCAAGTATGGAGGGGTCATGCTTTGGTCCAAGTATTATGATGACCAGACTAAATACAGTGCTTCCATCAAGAACCACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

274

Amino Acids

29.58

Weight (kDa)

5.6

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 21 - 222 2.1e-20 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 280
Acc65I GGTACC 1 cut(s) 47
AccB1I GGYRCC 2 cut(s) 47, 509
AccI GTMKAC 1 cut(s) 655
AciI CCGC 2 cut(s) 5, 468
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 3 cut(s) 121, 579, 633
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 2 cut(s) 49, 739
AfiI CCNNNNNNNGG 4 cut(s) 113, 406, 520, 577
AhdI GACNNNNNGTC 1 cut(s) 199
AhlI ACTAGT 1 cut(s) 179
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 6 cut(s) 98, 189, 258, 662, 674, 728
AluI AGCT 6 cut(s) 98, 189, 258, 662, 674, 728
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 152
AoxI GGCC 4 cut(s) 121, 523, 579, 633
ApeKI GCWGC 4 cut(s) 174, 470, 662, 674
Asp700I GAANNNNTTC 1 cut(s) 314
Asp718I GGTACC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 523, 544, 768
AsuHPI GGTGA 2 cut(s) 238, 362
AvaII GGWCC 2 cut(s) 544, 768
BaeGI GKGCMC 2 cut(s) 485, 514
BalI TGGCCA 1 cut(s) 123
BanI GGYRCC 2 cut(s) 47, 509
BanII GRGCYC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 4 cut(s) 161, 482, 649, 661
BccI CCATC 2 cut(s) 359, 815
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 53
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 4 cut(s) 143, 180, 285, 823
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 280
BisI GCNGC 5 cut(s) 5, 175, 471, 663, 675
BlsI GCNGC 5 cut(s) 6, 176, 472, 664, 676
Bme18I GGWCC 2 cut(s) 544, 768
BmeRI GACNNNNNGTC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 523, 544, 768
BmiI GGNNCC 3 cut(s) 49, 511, 545
BmrI ACTGGG 2 cut(s) 33, 472
BmsI GCATC 2 cut(s) 271, 484
BmuI ACTGGG 2 cut(s) 33, 472
BplI GAGNNNNNCTC 2 cut(s) 498, 530
BpuEI CTTGAG 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 51, 649
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 406, 520, 577
Bse1I ACTGG 2 cut(s) 28, 478
Bse3DI GCAATG 2 cut(s) 11, 124
BseDI CCNNGG 2 cut(s) 51, 649
BseGI GGATG 3 cut(s) 286, 370, 415
BseLI CCNNNNNNNGG 4 cut(s) 113, 406, 520, 577
BseMI GCAATG 2 cut(s) 11, 124
BseMII CTCAG 1 cut(s) 601
BseNI ACTGG 2 cut(s) 28, 478
BseRI GAGGAG 2 cut(s) 258, 261
BseSI GKGCMC 2 cut(s) 485, 514
BseX3I CGGCCG 1 cut(s) 579
BseXI GCAGC 4 cut(s) 161, 482, 649, 661
BsgI GTGCAG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 4 cut(s) 123, 525, 581, 635
BshNI GGYRCC 2 cut(s) 47, 509
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 632
BslI CCNNNNNNNGG 4 cut(s) 113, 406, 520, 577
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 4 cut(s) 123, 525, 581, 635
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 3 cut(s) 191, 485, 514
Bsp143I GATC 4 cut(s) 135, 157, 583, 703
BspACI CCGC 2 cut(s) 5, 468
BspANI GGCC 4 cut(s) 123, 525, 581, 635
BspCNI CTCAG 1 cut(s) 600
BspLI GGNNCC 3 cut(s) 49, 511, 545
BspMI ACCTGC 1 cut(s) 280
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 47, 509
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 2 cut(s) 11, 124
BsrI ACTGG 2 cut(s) 28, 478
BssECI CCNNGG 2 cut(s) 51, 649
BssMI GATC 4 cut(s) 135, 157, 583, 703
BssT1I CCWWGG 2 cut(s) 51, 649
Bst4CI ACNGT 2 cut(s) 440, 800
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 587
BstF5I GGATG 3 cut(s) 286, 370, 415
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 4 cut(s) 138, 160, 586, 706
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 4 cut(s) 135, 157, 583, 703
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 2 cut(s) 13, 671
BstSLI GKGCMC 2 cut(s) 485, 514
BstV1I GCAGC 4 cut(s) 161, 482, 649, 661
BstZI CGGCCG 1 cut(s) 579
BsuRI GGCC 4 cut(s) 123, 525, 581, 635
BtsCI GGATG 3 cut(s) 286, 370, 415
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 3 cut(s) 485, 620, 805
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 475
Cfr13I GGNCC 3 cut(s) 523, 544, 768
CseI GACGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 48, 738
CviAII CATG 4 cut(s) 133, 567, 606, 760
CviQI GTAC 2 cut(s) 48, 738
DdeI CTNAG 1 cut(s) 587
DpnI GATC 4 cut(s) 137, 159, 585, 705
DpnII GATC 4 cut(s) 135, 157, 583, 703
DriI GACNNNNNGTC 1 cut(s) 199
EaeI YGGCCR 3 cut(s) 121, 579, 633
EagI CGGCCG 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 51
Eam1105I GACNNNNNGTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 189
EclXI CGGCCG 1 cut(s) 579
Eco130I CCWWGG 2 cut(s) 51, 649
Eco24I GRGCYC 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 544, 768
Eco52I CGGCCG 1 cut(s) 579
Eco53kI GAGCTC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 189
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 51, 649
EcoT38I GRGCYC 1 cut(s) 191
ErhI CCWWGG 2 cut(s) 51, 649
FaeI CATG 4 cut(s) 136, 570, 609, 763
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FatI CATG 4 cut(s) 132, 566, 605, 759
FbaI TGATCA 1 cut(s) 135
FblI GTMKAC 1 cut(s) 655
Fnu4HI GCNGC 5 cut(s) 5, 175, 471, 663, 675
FokI GGATG 3 cut(s) 293, 377, 422
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 5 cut(s) 5, 175, 471, 663, 675
FspBI CTAG 4 cut(s) 143, 180, 285, 823
GlaI GCGC 1 cut(s) 474
GluI GCNGC 5 cut(s) 5, 175, 471, 663, 675
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 4 cut(s) 123, 525, 581, 635
HapII CCGG 1 cut(s) 632
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 475
Hin1II CATG 4 cut(s) 136, 570, 609, 763
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HinfI GANTC 2 cut(s) 127, 229
HpaII CCGG 1 cut(s) 632
HphI GGTGA 2 cut(s) 238, 362
Hpy166II GTNNAC 3 cut(s) 91, 460, 656
Hpy188I TCNGA 2 cut(s) 193, 625
Hpy188III TCNNGA 3 cut(s) 517, 668, 811
Hpy8I GTNNAC 3 cut(s) 91, 460, 656
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 2 cut(s) 440, 800
HpyCH4IV ACGT 2 cut(s) 537, 740
HpyCH4V TGCA 4 cut(s) 177, 296, 434, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 671
HpyF3I CTNAG 1 cut(s) 587
HpySE526I ACGT 2 cut(s) 537, 740
Hsp92II CATG 4 cut(s) 136, 570, 609, 763
HspAI GCGC 1 cut(s) 473
KpnI GGTACC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 4 cut(s) 135, 157, 583, 703
LmnI GCTCC 3 cut(s) 194, 255, 670
Lsp1109I GCAGC 4 cut(s) 161, 482, 649, 661
LweI GCATC 2 cut(s) 271, 484
MaeI CTAG 4 cut(s) 143, 180, 285, 823
MaeII ACGT 2 cut(s) 537, 740
MaeIII GTNAC 1 cut(s) 350
MalI GATC 4 cut(s) 137, 159, 585, 705
MboI GATC 4 cut(s) 135, 157, 583, 703
MboII GAAGA 2 cut(s) 68, 327
MhlI GDGCHC 3 cut(s) 191, 485, 514
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 3 cut(s) 313, 369, 548
MluNI TGGCCA 1 cut(s) 123
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 216, 484
Mox20I TGGCCA 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 314
MscI TGGCCA 1 cut(s) 123
MseI TTAA 2 cut(s) 198, 732
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 1 cut(s) 632
MwoI GCNNNNNNNGC 2 cut(s) 13, 671
NdeII GATC 4 cut(s) 135, 157, 583, 703
NlaIII CATG 4 cut(s) 136, 570, 609, 763
NlaIV GGNNCC 3 cut(s) 49, 511, 545
NmeAIII GCCGAG 1 cut(s) 557
NmuCI GTSAC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 5 cut(s) 6, 176, 472, 664, 676
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 49, 511, 545
PspPI GGNCC 3 cut(s) 523, 544, 768
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 2 cut(s) 49, 739
RsaNI GTAC 2 cut(s) 48, 738
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 198, 732
SatI GCNGC 5 cut(s) 5, 175, 471, 663, 675
Sau3AI GATC 4 cut(s) 135, 157, 583, 703
Sau96I GGNCC 3 cut(s) 523, 544, 768
SchI GAGTC 1 cut(s) 121
SduI GDGCHC 3 cut(s) 191, 485, 514
SfaNI GCATC 2 cut(s) 271, 484
SinI GGWCC 2 cut(s) 544, 768
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 3 cut(s) 313, 369, 548
SsiI CCGC 2 cut(s) 5, 468
SspMI CTAG 4 cut(s) 143, 180, 285, 823
SstI GAGCTC 1 cut(s) 191
StyI CCWWGG 2 cut(s) 51, 649
TaaI ACNGT 2 cut(s) 440, 800
TaiI ACGT 2 cut(s) 540, 743
TaqI TCGA 3 cut(s) 236, 384, 531
TasI AATT 3 cut(s) 313, 369, 548
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 2 cut(s) 198, 732
Tru9I TTAA 2 cut(s) 198, 732
TscAI CASTG 3 cut(s) 485, 620, 805
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 4 cut(s) 174, 470, 662, 674
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 3 cut(s) 485, 620, 805
VpaK11BI GGWCC 2 cut(s) 544, 768
XmiI GTMKAC 1 cut(s) 655
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 4 cut(s) 143, 180, 285, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.