Prupe.2G177900_v2.0.a1

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000601
Physical Location & Seq
Reverse (-)
22262069 .. 22262968
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G177900.1

Sequence Viewer

Length: 900 bp
ATGGCACCAAATTTAGCAATTTCACTGGCATTTCTCATTTCTTTAAGCCTAGCACTACAATTTGGAGCTGATGCTGCAGGCATTGCCATCTACTGGGGTCAAAATGGGAACGAGGGTACCTTGGAGGAAACTTGCGCCACAGGCAACTATGAGTTTGTGAACTTAGCTTTTCTTCCAACCTTTGGCAATGGCCAGACCCCCATGATCAACCTAGCTGGACACTGTGATCCCTACACTAATGGCTGCACTGGCTTGAGCTCTGACATTAAATCATGCCAAGCAAAAGGGGTCAAGGTCATTCTTTCAATTGGAGGAGGAGCAGGGAGCTACTACCTCACTTCTAAAGAGGATGCTAGGCAAGTTGCTACTTACTTATGGAACAATTTCTTGGGGGGAAGTAGTTCTACATCTCGCCCACTCGGTGACGCTGTTTTGGATGGAATTGATTTCGACATCGAAGGAGGAACAAACCTACATTGGGATGACCTTGCAAGATACCTCTCTGCATATAGTAAACAAGGCAAGAAAGTTTATTTAACTGCAGCTCCCCAGTGCCCTTTCCCAGATGCTTGGGTTGGGGATGCCCTCAAGACAGGCCTTTTTGACAATGTTTGGGTCCAATTCTACAACAACCCACCTTGCCAATACTCCTCTGGGGATCTTAGCAACCTTGAAAATGCATGGAAGCAATGGATTTCAGATACTCCAGCTACCAAGATATTCCTAGGACTACCAGCTGCCCCTGCAGCTGCTGGAAGTGGCTTCATTCCTGTGGCTGATCTCACTTCTAAAGTGCTTCCAGCAATTAAAGGTTCTCCCAAGTATGGAGGGGTCATGCTGTGGTCCAAGTATTATGATGATCAAACTAACTATAGCTCTTCCATCAAGAGCCATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

300

Amino Acids

31.89

Weight (kDa)

4.88

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 4, 116
AccB7I CCANNNNNTGG 2 cut(s) 93, 182
AclWI GGATC 2 cut(s) 221, 666
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 10
AdeI CACNNNGTG 1 cut(s) 422
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 4 cut(s) 93, 182, 478, 824
AgsI TTSAA 2 cut(s) 306, 674
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
Alw21I GWGCWC 1 cut(s) 260
AlwI GGATC 2 cut(s) 221, 666
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 2 cut(s) 190, 595
ApeKI GCWGC 6 cut(s) 74, 243, 542, 737, 746, 749
ApoI RAATTY 1 cut(s) 10
Asp700I GAANNNNTTC 2 cut(s) 383, 400
Asp718I GGTACC 1 cut(s) 116
AspA2I CCTAGG 1 cut(s) 724
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 616, 843
AsuHPI GGTGA 1 cut(s) 434
AvaII GGWCC 2 cut(s) 616, 843
AvrII CCTAGG 1 cut(s) 724
BaeGI GKGCMC 1 cut(s) 557
BaeI ACNNNNGTAYC 2 cut(s) 100, 133
BalI TGGCCA 1 cut(s) 192
BanI GGYRCC 2 cut(s) 4, 116
BanII GRGCYC 1 cut(s) 260
BarI GAAGNNNNNNTAC 2 cut(s) 388, 420
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 6 cut(s) 61, 230, 554, 724, 736, 758
BccI CCATC 3 cut(s) 95, 431, 890
BclI TGATCA 2 cut(s) 204, 859
BfaI CTAG 4 cut(s) 50, 212, 354, 725
BfmI CTRYAG 4 cut(s) 75, 540, 744, 871
BisI GCNGC 6 cut(s) 75, 244, 543, 738, 747, 750
BlnI CCTAGG 1 cut(s) 724
BlsI GCNGC 6 cut(s) 76, 245, 544, 739, 748, 751
Bme18I GGWCC 2 cut(s) 616, 843
BmgT120I GGNCC 2 cut(s) 616, 843
BmiI GGNNCC 3 cut(s) 6, 118, 617
BmrI ACTGGG 2 cut(s) 103, 544
BmsI GCATC 4 cut(s) 61, 340, 556, 571
BmuI ACTGGG 2 cut(s) 103, 544
BpmI CTGGAG 1 cut(s) 690
BpuEI CTTGAG 2 cut(s) 274, 572
BsaJI CCNNGG 2 cut(s) 120, 724
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 182, 478, 824
Bse1I ACTGG 4 cut(s) 30, 98, 253, 550
Bse3DI GCAATG 3 cut(s) 81, 193, 695
BseDI CCNNGG 2 cut(s) 120, 724
BseGI GGATG 4 cut(s) 355, 442, 487, 586
BseLI CCNNNNNNNGG 4 cut(s) 93, 182, 478, 824
BseMI GCAATG 3 cut(s) 81, 193, 695
BseNI ACTGG 4 cut(s) 30, 98, 253, 550
BseRI GAGGAG 3 cut(s) 327, 330, 640
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 6 cut(s) 61, 230, 554, 724, 736, 758
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 2 cut(s) 192, 597
BshNI GGYRCC 2 cut(s) 4, 116
BsiHKAI GWGCWC 1 cut(s) 260
BslI CCNNNNNNNGG 4 cut(s) 93, 182, 478, 824
BsnI GGCC 2 cut(s) 192, 597
Bsp1286I GDGCHC 2 cut(s) 260, 557
Bsp143I GATC 5 cut(s) 204, 226, 658, 778, 859
BspANI GGCC 2 cut(s) 192, 597
BspLI GGNNCC 3 cut(s) 6, 118, 617
BspMAI CTGCAG 3 cut(s) 79, 544, 748
BspPI GGATC 2 cut(s) 221, 666
BspQI GCTCTTC 1 cut(s) 883
BspT107I GGYRCC 2 cut(s) 4, 116
BsrDI GCAATG 3 cut(s) 81, 193, 695
BsrI ACTGG 4 cut(s) 30, 98, 253, 550
BssECI CCNNGG 2 cut(s) 120, 724
BssMI GATC 5 cut(s) 204, 226, 658, 778, 859
BssT1I CCWWGG 2 cut(s) 120, 724
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 883
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 163, 662
BstF5I GGATG 4 cut(s) 355, 442, 487, 586
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 5 cut(s) 207, 229, 661, 781, 862
BstMBI GATC 5 cut(s) 204, 226, 658, 778, 859
BstMWI GCNNNNNNNGC 6 cut(s) 74, 83, 141, 249, 743, 746
BstSFI CTRYAG 4 cut(s) 75, 540, 744, 871
BstSLI GKGCMC 1 cut(s) 557
BstV1I GCAGC 6 cut(s) 61, 230, 554, 724, 736, 758
BstX2I RGATCY 1 cut(s) 658
BstXI CCANNNNNNTGG 1 cut(s) 570
BstYI RGATCY 1 cut(s) 658
BsuRI GGCC 2 cut(s) 192, 597
BtsCI GGATG 4 cut(s) 355, 442, 487, 586
BtsIMutI CAGTG 4 cut(s) 23, 220, 246, 557
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 752
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 616, 843
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 117
CviAII CATG 5 cut(s) 202, 273, 681, 835, 893
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 2 cut(s) 163, 662
DpnI GATC 5 cut(s) 206, 228, 660, 780, 861
DpnII GATC 5 cut(s) 204, 226, 658, 778, 859
DraIII CACNNNGTG 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 883
EarI CTCTTC 1 cut(s) 883
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 120, 724
Eco147I AGGCCT 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 616, 843
Eco53kI GAGCTC 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 120, 724
EcoT22I ATGCAT 1 cut(s) 682
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 2 cut(s) 120, 724
FaeI CATG 5 cut(s) 205, 276, 684, 838, 896
FatI CATG 5 cut(s) 201, 272, 680, 834, 892
FbaI TGATCA 2 cut(s) 204, 859
Fnu4HI GCNGC 6 cut(s) 75, 244, 543, 738, 747, 750
FokI GGATG 4 cut(s) 362, 449, 494, 593
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 6 cut(s) 75, 244, 543, 738, 747, 750
FspBI CTAG 4 cut(s) 50, 212, 354, 725
GlaI GCGC 1 cut(s) 136
GluI GCNGC 6 cut(s) 75, 244, 543, 738, 747, 750
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 2 cut(s) 192, 597
HgaI GACGC 1 cut(s) 434
HhaI GCGC 1 cut(s) 137
Hin1II CATG 5 cut(s) 205, 276, 684, 838, 896
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 160, 515
Hpy188I TCNGA 2 cut(s) 262, 700
Hpy188III TCNNGA 2 cut(s) 589, 886
Hpy8I GTNNAC 2 cut(s) 160, 515
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4V TGCA 7 cut(s) 77, 246, 491, 506, 542, 680, 746
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 83, 141, 249, 743, 746
HpyF3I CTNAG 2 cut(s) 163, 662
Hsp92II CATG 5 cut(s) 205, 276, 684, 838, 896
HspAI GCGC 1 cut(s) 135
KpnI GGTACC 1 cut(s) 120
Ksp22I TGATCA 2 cut(s) 204, 859
Kzo9I GATC 5 cut(s) 204, 226, 658, 778, 859
LguI GCTCTTC 1 cut(s) 883
LmnI GCTCC 4 cut(s) 65, 317, 324, 550
Lsp1109I GCAGC 6 cut(s) 61, 230, 554, 724, 736, 758
LweI GCATC 4 cut(s) 61, 340, 556, 571
MaeI CTAG 4 cut(s) 50, 212, 354, 725
MaeIII GTNAC 1 cut(s) 422
MalI GATC 5 cut(s) 206, 228, 660, 780, 861
MboI GATC 5 cut(s) 204, 226, 658, 778, 859
MboII GAAGA 2 cut(s) 164, 870
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 2 cut(s) 260, 557
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 8 cut(s) 10, 18, 59, 306, 382, 441, 620, 804
MluNI TGGCCA 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 192
Mph1103I ATGCAT 1 cut(s) 682
MroXI GAANNNNTTC 2 cut(s) 383, 400
MscI TGGCCA 1 cut(s) 192
MseI TTAA 4 cut(s) 44, 267, 536, 807
MslI CAYNNNNRTG 2 cut(s) 480, 770
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 2 cut(s) 737, 749
MunI CAATTG 1 cut(s) 306
MwoI GCNNNNNNNGC 6 cut(s) 74, 83, 141, 249, 743, 746
NdeII GATC 5 cut(s) 204, 226, 658, 778, 859
NlaIII CATG 5 cut(s) 205, 276, 684, 838, 896
NlaIV GGNNCC 3 cut(s) 6, 118, 617
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 682
PceI AGGCCT 1 cut(s) 597
PciSI GCTCTTC 1 cut(s) 883
PdmI GAANNNNTTC 2 cut(s) 383, 400
PflMI CCANNNNNTGG 2 cut(s) 93, 182
PkrI GCNGC 6 cut(s) 76, 245, 544, 739, 748, 751
Psp124BI GAGCTC 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 6, 118, 617
PspPI GGNCC 2 cut(s) 616, 843
PstI CTGCAG 3 cut(s) 79, 544, 748
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 658
PvuII CAGCTG 2 cut(s) 737, 749
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 2 cut(s) 480, 770
SacI GAGCTC 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 883
SaqAI TTAA 4 cut(s) 44, 267, 536, 807
SatI GCNGC 6 cut(s) 75, 244, 543, 738, 747, 750
Sau3AI GATC 5 cut(s) 204, 226, 658, 778, 859
Sau96I GGNCC 2 cut(s) 616, 843
SduI GDGCHC 2 cut(s) 260, 557
SfaNI GCATC 4 cut(s) 61, 340, 556, 571
SfcI CTRYAG 4 cut(s) 75, 540, 744, 871
SinI GGWCC 2 cut(s) 616, 843
SmiMI CAYNNNNRTG 2 cut(s) 480, 770
SmlI CTYRAG 2 cut(s) 253, 587
SmoI CTYRAG 2 cut(s) 253, 587
Sse9I AATT 8 cut(s) 10, 18, 59, 306, 382, 441, 620, 804
SseBI AGGCCT 1 cut(s) 597
SspMI CTAG 4 cut(s) 50, 212, 354, 725
SstI GAGCTC 1 cut(s) 260
StuI AGGCCT 1 cut(s) 597
StyI CCWWGG 2 cut(s) 120, 724
TaaI ACNGT 1 cut(s) 224
TaqI TCGA 2 cut(s) 450, 456
TasI AATT 8 cut(s) 10, 18, 59, 306, 382, 441, 620, 804
Tru1I TTAA 4 cut(s) 44, 267, 536, 807
Tru9I TTAA 4 cut(s) 44, 267, 536, 807
TscAI CASTG 4 cut(s) 30, 227, 253, 557
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 6 cut(s) 74, 243, 542, 737, 746, 749
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 754
TspRI CASTG 4 cut(s) 30, 227, 253, 557
Van91I CCANNNNNTGG 2 cut(s) 93, 182
VpaK11BI GGWCC 2 cut(s) 616, 843
XapI RAATTY 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 650
XmaJI CCTAGG 1 cut(s) 724
XmnI GAANNNNTTC 2 cut(s) 383, 400
XspI CTAG 4 cut(s) 50, 212, 354, 725
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.