Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8492325.1

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Reverse (-)

945 .. 1844

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8492325.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggcattcaagtctatattttcagtagcattattgctatctttagtgacactgcttctggctgttgggtcaaatgcaggtggaattgctatttattggggccaaaatggaaatgaaggcacattagcacaaacatgttcttcagggaattaccaatttgtgaacatagctttcctttcatcatttggtaatggccagacccctatcataaaccttgctggtcactgtgatccatccaccaacgaatgcaccaagttaagcccagatatcaagtcatgccaagccgaaggcatcaaggtcatactctccataggaggaggtgctgggagctattctctagcttcatccgatgatgcccgacaagttgctatgtacttgtggaacaacttcttgggaggacagtcgtcatccaggccgttgggagatgctgttttggatggagttgactttgatattgaaggaggaactgatcaacattgggatgacctcgctaggtacctttctggttacagcaagaagggcaagaaagtttacttgactgctgctccacagtgtccctttcctgatgcttatgttggaaatgcactaaacacaggcctcttcgattttgtttgggtacaattctacaacaaccctccttgccagtacacttctggcgatgtttcaaatctcgaagatgcttggaagcaatggacttctgccattcctgcacataagattttcttaggacttcctgctgcacctcaagctgctggcagtggatttattcctgcagctgatctcaactcacaagtccttccggctatcaagaattcggcaaaatatggaggtgtcatgctttggtccaagtattatgatgatctagatggatacagctcttccatcaagaatgatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

299

Amino Acids

31.81

Weight (kDa)

4.74

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	495
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	4 cut(s)	374, 497, 618, 647
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	10, 458, 666
AjnI	CCWGG	1 cut(s)	410
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	6 cut(s)	170, 330, 341, 749, 776, 876
AluI	AGCT	6 cut(s)	170, 330, 341, 749, 776, 876
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	4 cut(s)	100, 193, 413, 595
ApeKI	GCWGC	4 cut(s)	542, 737, 749, 773
ApoI	RAATTY	1 cut(s)	811
Asp700I	GAANNNNTTC	1 cut(s)	386
Asp718I	GGTACC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	100, 843
AvaII	GGWCC	1 cut(s)	843
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	529, 724, 736, 785
BccI	CCATC	4 cut(s)	241, 431, 860, 890
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	863
BclI	TGATCA	1 cut(s)	469
BfaI	CTAG	4 cut(s)	338, 492, 863, 898
BfmI	CTRYAG	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	863
BisI	GCNGC	4 cut(s)	543, 738, 750, 774
BlsI	GCNGC	4 cut(s)	544, 739, 751, 775
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	843
BmgT120I	GGNCC	2 cut(s)	100, 843
BmiI	GGNNCC	2 cut(s)	101, 497
BmrFI	CCNGG	1 cut(s)	412
BmsI	GCATC	5 cut(s)	300, 343, 415, 556, 667
BoxI	GACNNNNGTC	1 cut(s)	403
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpuEI	CTTGAG	1 cut(s)	729
BsaXI	ACNNNNNCTCC	4 cut(s)	414, 444, 529, 559
Bse1I	ACTGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	695
BseBI	CCWGG	1 cut(s)	412
BseGI	GGATG	5 cut(s)	233, 344, 407, 442, 487
BseMI	GCAATG	1 cut(s)	695
BseNI	ACTGG	1 cut(s)	643
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	4 cut(s)	529, 724, 736, 785
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	2 cut(s)	693, 723
BshFI	GGCC	4 cut(s)	102, 195, 415, 597
BshNI	GGYRCC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	800
BslFI	GGGAC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	540
BsmI	GAATGC	2 cut(s)	5, 251
BsnI	GGCC	4 cut(s)	102, 195, 415, 597
Bsp143I	GATC	4 cut(s)	229, 469, 778, 859
BspANI	GGCC	4 cut(s)	102, 195, 415, 597
BspLI	GGNNCC	2 cut(s)	101, 497
BspMAI	CTGCAG	1 cut(s)	775
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	695
BsrI	ACTGG	1 cut(s)	643
BssMI	GATC	4 cut(s)	229, 469, 778, 859
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	3 cut(s)	227, 402, 552
Bst6I	CTCTTC	2 cut(s)	605, 883
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	1 cut(s)	724
BstF5I	GGATG	5 cut(s)	233, 344, 407, 442, 487
BstKTI	GATC	4 cut(s)	232, 472, 781, 862
BstMBI	GATC	4 cut(s)	229, 469, 778, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	519, 707, 746
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	138
BstPAI	GACNNNNGTC	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	771
BstV1I	GCAGC	4 cut(s)	529, 724, 736, 785
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	4 cut(s)	102, 195, 415, 597
BtgZI	GCGATG	1 cut(s)	672
BtsCI	GGATG	5 cut(s)	233, 344, 407, 442, 487
BtsI	GCAGTG	2 cut(s)	50, 763
BtsIMutI	CAGTG	4 cut(s)	50, 223, 557, 763
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	754
Cfr13I	GGNCC	2 cut(s)	100, 843
Csp6I	GTAC	4 cut(s)	373, 496, 617, 646
CviAII	CATG	3 cut(s)	135, 276, 835
CviQI	GTAC	4 cut(s)	373, 496, 617, 646
DdeI	CTNAG	1 cut(s)	724
DpnI	GATC	4 cut(s)	231, 471, 780, 861
DpnII	GATC	4 cut(s)	229, 469, 778, 859
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	605, 883
EarI	CTCTTC	2 cut(s)	605, 883
Eco147I	AGGCCT	1 cut(s)	597
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	843
Eco57I	CTGAAG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	410
EcoRV	GATATC	1 cut(s)	268
FaeI	CATG	3 cut(s)	138, 279, 838
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	3 cut(s)	134, 275, 834
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	543, 738, 750, 774
FokI	GGATG	5 cut(s)	220, 331, 394, 449, 494
Fsp4HI	GCNGC	4 cut(s)	543, 738, 750, 774
FspBI	CTAG	4 cut(s)	338, 492, 863, 898
GluI	GCNGC	4 cut(s)	543, 738, 750, 774
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	4 cut(s)	102, 195, 415, 597
HapII	CCGG	1 cut(s)	800
Hin1II	CATG	3 cut(s)	138, 279, 838
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	800
Hpy166II	GTNNAC	4 cut(s)	163, 445, 532, 648
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	5 cut(s)	563, 671, 808, 863, 886
Hpy8I	GTNNAC	4 cut(s)	163, 445, 532, 648
HpyAV	CCTTC	5 cut(s)	110, 281, 452, 511, 806
HpyCH4III	ACNGT	3 cut(s)	227, 402, 552
HpyCH4V	TGCA	6 cut(s)	77, 249, 584, 710, 740, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	519, 707, 746
HpyF3I	CTNAG	1 cut(s)	724
Hsp92II	CATG	3 cut(s)	138, 279, 838
KpnI	GGTACC	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	229, 469, 778, 859
LguI	GCTCTTC	1 cut(s)	883
LmnI	GCTCC	2 cut(s)	327, 550
Lsp1109I	GCAGC	4 cut(s)	529, 724, 736, 785
LweI	GCATC	5 cut(s)	300, 343, 415, 556, 667
MaeI	CTAG	4 cut(s)	338, 492, 863, 898
MaeIII	GTNAC	3 cut(s)	46, 221, 506
MalI	GATC	4 cut(s)	231, 471, 780, 861
MboI	GATC	4 cut(s)	229, 469, 778, 859
MboII	GAAGA	4 cut(s)	132, 592, 686, 870
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	5 cut(s)	84, 148, 155, 620, 811
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	9 cut(s)	308, 311, 389, 455, 497, 608, 645, 753, 821
Mox20I	TGGCCA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	2 cut(s)	133, 480
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	1 cut(s)	412
Mva1269I	GAATGC	2 cut(s)	5, 251
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	3 cut(s)	519, 707, 746
NdeII	GATC	4 cut(s)	229, 469, 778, 859
NlaIII	CATG	3 cut(s)	138, 279, 838
NlaIV	GGNNCC	2 cut(s)	101, 497
NmuCI	GTSAC	2 cut(s)	46, 221
NspI	RCATGY	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	597
PciI	ACATGT	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	883
PctI	GAATGC	2 cut(s)	5, 251
PdmI	GAANNNNTTC	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	544, 739, 751, 775
PscI	ACATGT	1 cut(s)	134
PshAI	GACNNNNGTC	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	101, 497
PspPI	GGNCC	2 cut(s)	100, 843
PstI	CTGCAG	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	4 cut(s)	374, 497, 618, 647
RsaNI	GTAC	4 cut(s)	373, 496, 617, 646
RseI	CAYNNNNRTG	2 cut(s)	133, 480
SapI	GCTCTTC	1 cut(s)	883
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	4 cut(s)	543, 738, 750, 774
Sau3AI	GATC	4 cut(s)	229, 469, 778, 859
Sau96I	GGNCC	2 cut(s)	100, 843
ScrFI	CCNGG	1 cut(s)	412
SfaNI	GCATC	5 cut(s)	300, 343, 415, 556, 667
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	843
SmiMI	CAYNNNNRTG	2 cut(s)	133, 480
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
Sse9I	AATT	5 cut(s)	84, 148, 155, 620, 811
SseBI	AGGCCT	1 cut(s)	597
SspMI	CTAG	4 cut(s)	338, 492, 863, 898
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	410
TaaI	ACNGT	3 cut(s)	227, 402, 552
TaqI	TCGA	2 cut(s)	603, 672
TasI	AATT	5 cut(s)	84, 148, 155, 620, 811
TatI	WGTACW	2 cut(s)	372, 645
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	4 cut(s)	57, 230, 557, 763
TseFI	GTSAC	2 cut(s)	46, 221
TseI	GCWGC	4 cut(s)	542, 737, 749, 773
Tsp45I	GTSAC	2 cut(s)	46, 221
TspDTI	ATGAA	3 cut(s)	129, 168, 333
TspRI	CASTG	4 cut(s)	57, 230, 557, 763
VpaK11BI	GGWCC	1 cut(s)	843
XapI	RAATTY	1 cut(s)	811
XbaI	TCTAGA	1 cut(s)	862
XceI	RCATGY	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	4 cut(s)	338, 492, 863, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.