Rh1BG240900

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000601
Physical Location & Seq
Forward (+)
36397697 .. 36398389
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG240900.1

Sequence Viewer

Length: 693 bp
ATGATCAACCTAGCAGGACATTGTGATCCTTACACTAATGGCTGCACTGGTTTGAGCTCCGACATTAAGTCGTGCCAAGCAAAAGGGGTCAAGGTGATTCTTTCGATCGGAGGAGGAGCAGGGAGCTACTACCTCACATCTAAAGAGGATGCTAGGCAGGTTGCAATCTATTTGTGGAACAATTTCTTGGGAGGAACTTCATCTTCTCGCCCTCTTGGTGACGCTGTTTTGGATGGAATTGATTTTGATATCGAGGGAGGAACAAACCTACATTGGGATGACCTCGCTACATTCCTCTCTGCATACAGCAAAAAGGGTAAGAAGGTTTACTTGACCGCAGCGCCCCAGTGCCCTTTCCCTGATGCTTGGGTTGGAGGTGCCCTCAAGACGGGCCTTTTCGACTACGTTTGGGTCCAATTCTACAACAACCCACCATGCCAATACTCGGCCGATCTCAGCAACCTTGTAAGTGCATGGAAGCAGTGGGTTTCCGACATTCCGGCCACCAAGATATTCCTTGGTCTACCAGCTGCTCCTGAAGCTGCTGGAAGTGGCTTTATTCCTGTCAATGATCTCACTTCTAAAGTGCTTCCAGCAATTAAAGGTTCGTCCAAGTATGGAGGGGTCATGCTTTGGTCCAAGTATTATGATGACCAGACTAAATACAGTGCTTCCATCAAGAACCACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

230

Amino Acids

24.76

Weight (kDa)

6.8

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 20 - 178 3.8e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 523
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 20
AcoI YGGCCR 2 cut(s) 447, 501
AcuI CTGAAG 1 cut(s) 558
AfiI CCNNNNNNNGG 3 cut(s) 274, 388, 445
AhdI GACNNNNNGTC 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 4 cut(s) 57, 126, 530, 542
AluI AGCT 4 cut(s) 57, 126, 530, 542
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 1 cut(s) 20
AoxI GGCC 3 cut(s) 391, 447, 501
ApeKI GCWGC 4 cut(s) 42, 338, 530, 542
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 3 cut(s) 391, 412, 636
AsuHPI GGTGA 2 cut(s) 106, 230
AvaII GGWCC 2 cut(s) 412, 636
BaeGI GKGCMC 2 cut(s) 353, 382
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 4 cut(s) 29, 350, 517, 529
BccI CCATC 2 cut(s) 227, 683
BclI TGATCA 1 cut(s) 3
BfaI CTAG 3 cut(s) 11, 153, 691
BfoI RGCGCY 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 4 cut(s) 43, 339, 531, 543
BlsI GCNGC 4 cut(s) 44, 340, 532, 544
Bme18I GGWCC 2 cut(s) 412, 636
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 3 cut(s) 391, 412, 636
BmiI GGNNCC 2 cut(s) 379, 413
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 2 cut(s) 139, 352
BmuI ACTGGG 1 cut(s) 340
BplI GAGNNNNNCTC 2 cut(s) 366, 398
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 517
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 388, 445
Bse1I ACTGG 2 cut(s) 52, 346
BseDI CCNNGG 1 cut(s) 517
BseGI GGATG 3 cut(s) 154, 238, 283
BseLI CCNNNNNNNGG 3 cut(s) 274, 388, 445
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 2 cut(s) 52, 346
BseRI GAGGAG 2 cut(s) 126, 129
BseSI GKGCMC 2 cut(s) 353, 382
BseX3I CGGCCG 1 cut(s) 447
BseXI GCAGC 4 cut(s) 29, 350, 517, 529
BsgI GTGCAG 1 cut(s) 28
Bsh1285I CGRYCG 2 cut(s) 108, 450
BshFI GGCC 3 cut(s) 393, 449, 503
BshNI GGYRCC 1 cut(s) 377
BsiEI CGRYCG 2 cut(s) 108, 450
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 500
BslI CCNNNNNNNGG 3 cut(s) 274, 388, 445
BsnI GGCC 3 cut(s) 393, 449, 503
Bsp1286I GDGCHC 3 cut(s) 59, 353, 382
Bsp143I GATC 5 cut(s) 3, 25, 105, 451, 571
BspACI CCGC 1 cut(s) 336
BspANI GGCC 3 cut(s) 393, 449, 503
BspCNI CTCAG 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 379, 413
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 377
BsrI ACTGG 2 cut(s) 52, 346
BssECI CCNNGG 1 cut(s) 517
BssMI GATC 5 cut(s) 3, 25, 105, 451, 571
BssT1I CCWWGG 1 cut(s) 517
Bst4CI ACNGT 1 cut(s) 668
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 3 cut(s) 154, 238, 283
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 5 cut(s) 6, 28, 108, 454, 574
BstMBI GATC 5 cut(s) 3, 25, 105, 451, 571
BstMCI CGRYCG 2 cut(s) 108, 450
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstSLI GKGCMC 2 cut(s) 353, 382
BstV1I GCAGC 4 cut(s) 29, 350, 517, 529
BstZI CGGCCG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 393, 449, 503
BtsCI GGATG 3 cut(s) 154, 238, 283
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 4 cut(s) 45, 353, 488, 673
BveI ACCTGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 3 cut(s) 391, 412, 636
CseI GACGC 1 cut(s) 230
CviAII CATG 3 cut(s) 435, 474, 628
CviJI RGCY 9 cut(s) 42, 57, 126, 393, 449, 503, 530, 542, 555
CviKI_1 RGCY 9 cut(s) 42, 57, 126, 393, 449, 503, 530, 542, 555
DdeI CTNAG 1 cut(s) 455
DpnI GATC 5 cut(s) 5, 27, 107, 453, 573
DpnII GATC 5 cut(s) 3, 25, 105, 451, 571
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 2 cut(s) 447, 501
EagI CGGCCG 1 cut(s) 447
Eam1105I GACNNNNNGTC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 412, 636
Eco52I CGGCCG 1 cut(s) 447
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 57
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 517
FaeI CATG 3 cut(s) 438, 477, 631
FaiI YATR 6 cut(s) 304, 436, 475, 618, 629, 648
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 3 cut(s) 434, 473, 627
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 4 cut(s) 43, 339, 531, 543
FokI GGATG 3 cut(s) 161, 245, 290
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 4 cut(s) 43, 339, 531, 543
FspBI CTAG 3 cut(s) 11, 153, 691
GlaI GCGC 1 cut(s) 342
GluI GCNGC 4 cut(s) 43, 339, 531, 543
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 3 cut(s) 393, 449, 503
HapII CCGG 1 cut(s) 500
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 343
Hin1II CATG 3 cut(s) 438, 477, 631
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 1 cut(s) 97
HpaII CCGG 1 cut(s) 500
HphI GGTGA 2 cut(s) 106, 230
Hpy166II GTNNAC 2 cut(s) 328, 524
Hpy188I TCNGA 3 cut(s) 61, 110, 493
Hpy188III TCNNGA 3 cut(s) 385, 536, 679
Hpy8I GTNNAC 2 cut(s) 328, 524
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 45, 164, 302, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 3 cut(s) 438, 477, 631
HspAI GCGC 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 25, 105, 451, 571
LmnI GCTCC 4 cut(s) 62, 116, 123, 538
Lsp1109I GCAGC 4 cut(s) 29, 350, 517, 529
LweI GCATC 2 cut(s) 139, 352
MaeI CTAG 3 cut(s) 11, 153, 691
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 218
MalI GATC 5 cut(s) 5, 27, 107, 453, 573
MboI GATC 5 cut(s) 3, 25, 105, 451, 571
MboII GAAGA 1 cut(s) 195
MhlI GDGCHC 3 cut(s) 59, 353, 382
MluCI AATT 4 cut(s) 181, 237, 416, 597
MmeI TCCRAC 3 cut(s) 84, 352, 516
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 2 cut(s) 66, 600
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 1 cut(s) 500
MwoI GCNNNNNNNGC 1 cut(s) 539
NdeII GATC 5 cut(s) 3, 25, 105, 451, 571
NlaIII CATG 3 cut(s) 438, 477, 631
NlaIV GGNNCC 2 cut(s) 379, 413
NmeAIII GCCGAG 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 4 cut(s) 44, 340, 532, 544
Ple19I CGATCG 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 379, 413
PspPI GGNCC 3 cut(s) 391, 412, 636
PvuI CGATCG 1 cut(s) 108
PvuII CAGCTG 1 cut(s) 530
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 66, 600
SatI GCNGC 4 cut(s) 43, 339, 531, 543
Sau3AI GATC 5 cut(s) 3, 25, 105, 451, 571
Sau96I GGNCC 3 cut(s) 391, 412, 636
SduI GDGCHC 3 cut(s) 59, 353, 382
SfaNI GCATC 2 cut(s) 139, 352
SinI GGWCC 2 cut(s) 412, 636
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 4 cut(s) 181, 237, 416, 597
SsiI CCGC 1 cut(s) 336
SspMI CTAG 3 cut(s) 11, 153, 691
SstI GAGCTC 1 cut(s) 59
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 1 cut(s) 668
TaiI ACGT 1 cut(s) 408
TaqI TCGA 3 cut(s) 104, 252, 399
TasI AATT 4 cut(s) 181, 237, 416, 597
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 2 cut(s) 66, 600
Tru9I TTAA 2 cut(s) 66, 600
TscAI CASTG 4 cut(s) 52, 353, 488, 673
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 4 cut(s) 42, 338, 530, 542
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 4 cut(s) 52, 353, 488, 673
VpaK11BI GGWCC 2 cut(s) 412, 636
XmiI GTMKAC 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 3 cut(s) 11, 153, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.