FvH4_7g15560

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000601
Physical Location & Seq
Forward (+)
13451972 .. 13452865
894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15560.t1

Sequence Viewer

Length: 894 bp
ATGGTACCGAAGTTAGCTATTTCACTGGCACTCCTCATTTCAGTATCTATAGCACTACAAATTGGAGCCGATGCTGCAGGCATTGCGATCTACTGGGGTCAAAATGGAAACGAGGGTACCTTGGAAGAGACTTGTGCCACAGGCAACTATGACTATGTGAACCTAGCTTTTCTCCCAACATTCGGCAATGGCCAAACTCCCATGATCAACCTAGCCGGACATTGTGATCCCTACACTAATGGCTGCACTGGTTTGAGCTCCGACATTAAGTCGTGCCAGGCAAAAGGGGTTAAGGTGATTCTTTCAATCGGAGGAGGAGCAGGGAGCTACTACCTCACATCTAAAGAGGATGCAAGGCAGGTTGCAACCTATTTGTGGAACAATTTCTTGGGAGGAACTTCATCTTCTCGCCCTCTTGGTGACGCTGTCTTGGATGGAATTGATTTCGATATCGAGGGAGGAACAAACCTACATTGGGATGACCTCGCAACATTCCTTTCCGCATACAGCAAAAAGGGTAAGAAGGTTTACTTGACGGCAGCGCCCCAGTGCCCTTTCCCTGATGCTTGGGTTGGAGAAGCCCTCAAGACAGGCCTTTTCGACTACGTTTGGGTTCAATTCTACAACAACCCTCCATGCCAATACTCGGCCGATCTAAGCGACCTTGAAAGTGCATGGAAGCAGTGGGTTTCCGATATTCCGGCTACAAAGATATTCCTAGGTCTACCAGCTGCTCCGGACGCTGCTGGAAGTGGCTTTATTCCTGTCAATGATCTCACTTCTCAAGTGCTTCCAGCAATTAAAGGTTCTTCCAAGTATGGAGGGGTCATGCTATGGTCCAAGTATTATGATGATCAGACTCACTACAGTGCTTCCATCAAGAACCACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

298

Amino Acids

31.79

Weight (kDa)

4.8

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 28 - 245 6.8e-23 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
Acc65I GGTACC 2 cut(s) 4, 116
AccB1I GGYRCC 2 cut(s) 4, 116
AccI GTMKAC 1 cut(s) 724
AccIII TCCGGA 1 cut(s) 736
AciI CCGC 1 cut(s) 501
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 2 cut(s) 190, 648
AfaI GTAC 2 cut(s) 6, 118
AfiI CCNNNNNNNGG 4 cut(s) 182, 375, 475, 646
AgsI TTSAA 3 cut(s) 306, 617, 668
AhdI GACNNNNNGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AleI CACNNNNGTG 1 cut(s) 867
AluBI AGCT 5 cut(s) 17, 167, 258, 327, 731
AluI AGCT 5 cut(s) 17, 167, 258, 327, 731
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 736
AoxI GGCC 3 cut(s) 190, 592, 648
ApeKI GCWGC 5 cut(s) 74, 243, 539, 731, 743
Asp700I GAANNNNTTC 1 cut(s) 383
Asp718I GGTACC 2 cut(s) 4, 116
AspA2I CCTAGG 1 cut(s) 718
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 1 cut(s) 837
AsuHPI GGTGA 2 cut(s) 307, 431
AvaII GGWCC 1 cut(s) 837
AvrII CCTAGG 1 cut(s) 718
BaeGI GKGCMC 1 cut(s) 554
BaeI ACNNNNGTAYC 3 cut(s) 29, 100, 133
BalI TGGCCA 1 cut(s) 192
BanI GGYRCC 2 cut(s) 4, 116
BanII GRGCYC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 5 cut(s) 61, 230, 551, 718, 730
BccI CCATC 2 cut(s) 428, 884
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 1 cut(s) 278
BclI TGATCA 2 cut(s) 204, 853
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 4 cut(s) 164, 212, 719, 892
BfmI CTRYAG 3 cut(s) 48, 75, 865
BfoI RGCGCY 1 cut(s) 545
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 5 cut(s) 75, 244, 540, 732, 744
BlnI CCTAGG 1 cut(s) 718
BlsI GCNGC 5 cut(s) 76, 245, 541, 733, 745
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 837
BmeRI GACNNNNNGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 837
BmiI GGNNCC 3 cut(s) 6, 67, 118
BmrFI CCNGG 1 cut(s) 278
BmrI ACTGGG 2 cut(s) 103, 541
BmsI GCATC 3 cut(s) 61, 340, 553
BmuI ACTGGG 2 cut(s) 103, 541
BplI GAGNNNNNCTC 2 cut(s) 567, 599
BpuEI CTTGAG 2 cut(s) 569, 768
BsaJI CCNNGG 2 cut(s) 120, 718
BsaWI WCCGGW 1 cut(s) 736
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 4 cut(s) 182, 375, 475, 646
Bse1I ACTGG 4 cut(s) 30, 98, 253, 547
Bse3DI GCAATG 2 cut(s) 81, 193
BseAI TCCGGA 1 cut(s) 736
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 120, 718
BseGI GGATG 3 cut(s) 355, 439, 484
BseLI CCNNNNNNNGG 4 cut(s) 182, 375, 475, 646
BseMI GCAATG 2 cut(s) 81, 193
BseNI ACTGG 4 cut(s) 30, 98, 253, 547
BseRI GAGGAG 3 cut(s) 23, 327, 330
BseSI GKGCMC 1 cut(s) 554
BseX3I CGGCCG 1 cut(s) 648
BseXI GCAGC 5 cut(s) 61, 230, 551, 718, 730
BsgI GTGCAG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 651
BshFI GGCC 3 cut(s) 192, 594, 650
BshNI GGYRCC 2 cut(s) 4, 116
BsiEI CGRYCG 1 cut(s) 651
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 3 cut(s) 216, 701, 737
BslI CCNNNNNNNGG 4 cut(s) 182, 375, 475, 646
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 3 cut(s) 192, 594, 650
Bsp1286I GDGCHC 2 cut(s) 260, 554
Bsp13I TCCGGA 1 cut(s) 736
Bsp143I GATC 6 cut(s) 87, 204, 226, 652, 772, 853
BspACI CCGC 1 cut(s) 501
BspANI GGCC 3 cut(s) 192, 594, 650
BspEI TCCGGA 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 6, 67, 118
BspMAI CTGCAG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 2 cut(s) 4, 116
BsrDI GCAATG 2 cut(s) 81, 193
BsrI ACTGG 4 cut(s) 30, 98, 253, 547
BssECI CCNNGG 2 cut(s) 120, 718
BssMI GATC 6 cut(s) 87, 204, 226, 652, 772, 853
BssT1I CCWWGG 2 cut(s) 120, 718
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 869
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 656
BstF5I GGATG 3 cut(s) 355, 439, 484
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 6 cut(s) 90, 207, 229, 655, 775, 856
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 6 cut(s) 87, 204, 226, 652, 772, 853
BstMCI CGRYCG 1 cut(s) 651
BstMWI GCNNNNNNNGC 3 cut(s) 74, 83, 740
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 3 cut(s) 48, 75, 865
BstSLI GKGCMC 1 cut(s) 554
BstV1I GCAGC 5 cut(s) 61, 230, 551, 718, 730
BstZI CGGCCG 1 cut(s) 648
BsuRI GGCC 3 cut(s) 192, 594, 650
BtsCI GGATG 3 cut(s) 355, 439, 484
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 5 cut(s) 23, 246, 554, 689, 874
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 837
CseI GACGC 2 cut(s) 431, 749
Csp6I GTAC 2 cut(s) 5, 117
CviAII CATG 4 cut(s) 202, 636, 675, 829
CviQI GTAC 2 cut(s) 5, 117
DdeI CTNAG 1 cut(s) 656
DpnI GATC 6 cut(s) 89, 206, 228, 654, 774, 855
DpnII GATC 6 cut(s) 87, 204, 226, 652, 772, 853
DriI GACNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 2 cut(s) 190, 648
EagI CGGCCG 1 cut(s) 648
Eam1104I CTCTTC 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 258
EclXI CGGCCG 1 cut(s) 648
Eco130I CCWWGG 2 cut(s) 120, 718
Eco147I AGGCCT 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 260
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 837
Eco52I CGGCCG 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 276
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 2 cut(s) 120, 718
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 2 cut(s) 120, 718
FaeI CATG 4 cut(s) 205, 639, 678, 832
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 4 cut(s) 201, 635, 674, 828
FbaI TGATCA 2 cut(s) 204, 853
FblI GTMKAC 1 cut(s) 724
Fnu4HI GCNGC 5 cut(s) 75, 244, 540, 732, 744
FokI GGATG 3 cut(s) 362, 446, 491
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 5 cut(s) 75, 244, 540, 732, 744
FspBI CTAG 4 cut(s) 164, 212, 719, 892
GlaI GCGC 1 cut(s) 543
GluI GCNGC 5 cut(s) 75, 244, 540, 732, 744
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 3 cut(s) 192, 594, 650
HapII CCGG 3 cut(s) 216, 701, 737
HgaI GACGC 2 cut(s) 431, 749
HhaI GCGC 1 cut(s) 544
Hin1II CATG 4 cut(s) 205, 639, 678, 832
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HinfI GANTC 2 cut(s) 298, 859
HpaII CCGG 3 cut(s) 216, 701, 737
HphI GGTGA 2 cut(s) 307, 431
Hpy166II GTNNAC 3 cut(s) 160, 529, 725
Hpy188I TCNGA 4 cut(s) 262, 311, 694, 858
Hpy188III TCNNGA 3 cut(s) 586, 737, 880
Hpy8I GTNNAC 3 cut(s) 160, 529, 725
HpyAV CCTTC 1 cut(s) 517
HpyCH4III ACNGT 1 cut(s) 869
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 5 cut(s) 77, 246, 353, 365, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 83, 740
HpyF3I CTNAG 1 cut(s) 656
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 4 cut(s) 205, 639, 678, 832
HspAI GCGC 1 cut(s) 542
Kpn2I TCCGGA 1 cut(s) 736
KpnI GGTACC 2 cut(s) 8, 120
Ksp22I TGATCA 2 cut(s) 204, 853
Kzo9I GATC 6 cut(s) 87, 204, 226, 652, 772, 853
LmnI GCTCC 5 cut(s) 65, 263, 317, 324, 739
Lsp1109I GCAGC 5 cut(s) 61, 230, 551, 718, 730
LweI GCATC 3 cut(s) 61, 340, 553
MaeI CTAG 4 cut(s) 164, 212, 719, 892
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 1 cut(s) 419
MalI GATC 6 cut(s) 89, 206, 228, 654, 774, 855
MboI GATC 6 cut(s) 87, 204, 226, 652, 772, 853
MboII GAAGA 3 cut(s) 137, 396, 801
MhlI GDGCHC 2 cut(s) 260, 554
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 5 cut(s) 60, 382, 438, 617, 798
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 1 cut(s) 853
MmeI TCCRAC 2 cut(s) 285, 553
Mox20I TGGCCA 1 cut(s) 192
MroI TCCGGA 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 383
MscI TGGCCA 1 cut(s) 192
MseI TTAA 3 cut(s) 267, 291, 801
MslI CAYNNNNRTG 2 cut(s) 477, 867
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 3 cut(s) 216, 701, 737
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 3 cut(s) 74, 83, 740
NdeII GATC 6 cut(s) 87, 204, 226, 652, 772, 853
NlaIII CATG 4 cut(s) 205, 639, 678, 832
NlaIV GGNNCC 3 cut(s) 6, 67, 118
NmeAIII GCCGAG 1 cut(s) 626
NmuCI GTSAC 1 cut(s) 419
OliI CACNNNNGTG 1 cut(s) 867
PceI AGGCCT 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 298
PflFI GACNNNGTC 1 cut(s) 425
PkrI GCNGC 5 cut(s) 76, 245, 541, 733, 745
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
Psp124BI GAGCTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 6, 67, 118
PspPI GGNCC 1 cut(s) 837
PstI CTGCAG 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 2 cut(s) 6, 118
RsaNI GTAC 2 cut(s) 5, 117
RseI CAYNNNNRTG 2 cut(s) 477, 867
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 3 cut(s) 267, 291, 801
SatI GCNGC 5 cut(s) 75, 244, 540, 732, 744
Sau3AI GATC 6 cut(s) 87, 204, 226, 652, 772, 853
Sau96I GGNCC 1 cut(s) 837
SchI GAGTC 1 cut(s) 853
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 2 cut(s) 260, 554
SfaNI GCATC 3 cut(s) 61, 340, 553
SfcI CTRYAG 3 cut(s) 48, 75, 865
SinI GGWCC 1 cut(s) 837
SmiMI CAYNNNNRTG 2 cut(s) 477, 867
SmlI CTYRAG 2 cut(s) 584, 783
SmoI CTYRAG 2 cut(s) 584, 783
Sse9I AATT 5 cut(s) 60, 382, 438, 617, 798
SseBI AGGCCT 1 cut(s) 594
SsiI CCGC 1 cut(s) 501
SspMI CTAG 4 cut(s) 164, 212, 719, 892
SstI GAGCTC 1 cut(s) 260
StuI AGGCCT 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 2 cut(s) 120, 718
TaaI ACNGT 1 cut(s) 869
TaiI ACGT 1 cut(s) 609
TaqI TCGA 3 cut(s) 447, 453, 600
TasI AATT 5 cut(s) 60, 382, 438, 617, 798
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 3 cut(s) 267, 291, 801
Tru9I TTAA 3 cut(s) 267, 291, 801
TscAI CASTG 5 cut(s) 30, 253, 554, 689, 874
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 5 cut(s) 74, 243, 539, 731, 743
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 390
TspRI CASTG 5 cut(s) 30, 253, 554, 689, 874
Tth111I GACNNNGTC 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 837
XmaJI CCTAGG 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 724
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 4 cut(s) 164, 212, 719, 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.