AT5G24090

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
8143545 .. 8145252
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24090.1

Sequence Viewer

Length: 909 bp
ATGACCAACATGACTCTTCGCAAGCATGTTATATACTTTCTTTTCTTCATAAGCTGCTCTCTTAGCAAACCCTCCGATGCATCCAGAGGTGGCATAGCCATCTATTGGGGCCAAAACGGAAACGAAGGTAACCTCTCTGCCACGTGTGCCACCGGCCGGTATGCTTACGTCAACGTCGCCTTTCTTGTGAAATTCGGAAATGGCCAAACACCGGAGCTCAACCTTGCCGGCCACTGCAACCCTGCGGCGAACACTTGCACCCATTTTGGCTCTCAGGTCAAAGATTGTCAGTCTCGTGGCATCAAGGTTATGTTGTCTCTCGGCGGCGGGATTGGAAACTACTCGATTGGGTCGAGGGAGGACGCAAAAGTTATCGCTGATTATCTGTGGAACAACTTCTTGGGAGGAAAATCATCATCACGTCCCTTAGGTGATGCTGTTCTAGATGGTATCGATTTCAATATCGAGCTTGGCTCTCCTCAACACTGGGATGATCTCGCCAGGACTCTCTCAAAGTTTAGCCACAGAGGAAGAAAAATATATCTAACAGGAGCTCCTCAATGTCCATTTCCAGACAGATTAATGGGAAGTGCTCTCAACACTAAACGTTTTGACTATGTTTGGATTCAATTCTACAATAATCCACCGTGTTCATACAGTTCAGGTAATACTCAAAACCTCTTCGATTCATGGAACAAGTGGACCACTTCAATCGCAGCCCAAAAATTCTTCTTGGGTCTACCGGCAGCTCCTGAAGCTGCCGGAAGTGGCTATATCCCACCAGATGTACTGACTTCACAGATTCTTCCGACTTTAAAGAAGTCTAGGAAGTATGGAGGTGTAATGCTTTGGTCTAAATTCTGGGATGATAAAAATGGATACAGTTCATCTATATTGGCTAGTGTGTGA
Functional Annotation

Protein Analysis

302

Amino Acids

33.1

Weight (kDa)

9.17

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 32 - 250 5.9e-18 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 1 cut(s) 739
AciI CCGC 3 cut(s) 245, 324, 327
AclI AACGTT 1 cut(s) 607
AcoI YGGCCR 3 cut(s) 154, 202, 229
AcsI RAATTY 3 cut(s) 191, 725, 857
AcuI CTGAAG 1 cut(s) 774
AcvI CACGTG 1 cut(s) 144
AfaI GTAC 1 cut(s) 789
AfiI CCNNNNNNNGG 3 cut(s) 105, 156, 211
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 3 cut(s) 460, 629, 711
AjiI CACGTC 1 cut(s) 422
AjnI CCWGG 1 cut(s) 500
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 6 cut(s) 54, 217, 469, 554, 749, 758
AluI AGCT 6 cut(s) 54, 217, 469, 554, 749, 758
Alw21I GWGCWC 3 cut(s) 219, 556, 595
Alw26I GTCTC 2 cut(s) 297, 321
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 4 cut(s) 109, 154, 202, 229
ApeKI GCWGC 4 cut(s) 54, 716, 746, 758
ApoI RAATTY 3 cut(s) 191, 725, 857
AseI ATTAAT 1 cut(s) 581
Asp700I GAANNNNTTC 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 109, 702
AsuHPI GGTGA 1 cut(s) 443
AvaII GGWCC 1 cut(s) 702
AxyI CCTNAGG 1 cut(s) 427
BalI TGGCCA 1 cut(s) 204
BanII GRGCYC 2 cut(s) 219, 556
BauI CACGAG 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 144
Bbv12I GWGCWC 3 cut(s) 219, 556, 595
BbvI GCAGC 4 cut(s) 41, 728, 745, 758
BccI CCATC 2 cut(s) 107, 440
BciT130I CCWGG 1 cut(s) 502
BciVI GTATCC 1 cut(s) 872
BcoDI GTCTC 2 cut(s) 297, 321
BfaI CTAG 3 cut(s) 443, 825, 900
BfuI GTATCC 1 cut(s) 872
BisI GCNGC 6 cut(s) 55, 246, 325, 717, 747, 759
BlsI GCNGC 6 cut(s) 56, 247, 326, 718, 748, 760
Bme1390I CCNGG 1 cut(s) 502
Bme18I GGWCC 1 cut(s) 702
BmgBI CACGTC 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 109, 702
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 502
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 4 cut(s) 67, 89, 309, 424
BmuI ACTGGG 1 cut(s) 496
BplI GAGNNNNNCTC 2 cut(s) 458, 490
Bsa29I ATCGAT 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 156, 211
Bse118I RCCGGY 4 cut(s) 152, 156, 227, 742
Bse1I ACTGG 1 cut(s) 491
Bse21I CCTNAGG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 502
BseCI ATCGAT 1 cut(s) 453
BseGI GGATG 3 cut(s) 80, 496, 871
BseLI CCNNNNNNNGG 3 cut(s) 105, 156, 211
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 2 cut(s) 468, 546
BseX3I CGGCCG 1 cut(s) 154
BseXI GCAGC 4 cut(s) 41, 728, 745, 758
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 4 cut(s) 111, 156, 204, 231
BshVI ATCGAT 1 cut(s) 453
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 3 cut(s) 219, 556, 595
BsiSI CCGG 6 cut(s) 153, 157, 212, 228, 743, 762
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 105, 156, 211
BsmAI GTCTC 2 cut(s) 297, 321
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 4 cut(s) 111, 156, 204, 231
Bsp1286I GDGCHC 3 cut(s) 219, 556, 595
Bsp143I GATC 1 cut(s) 493
BspACI CCGC 3 cut(s) 245, 324, 327
BspANI GGCC 4 cut(s) 111, 156, 204, 231
BspCNI CTCAG 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 110
BsrFI RCCGGY 4 cut(s) 152, 156, 227, 742
BsrI ACTGG 1 cut(s) 491
BssAI RCCGGY 4 cut(s) 152, 156, 227, 742
BssMI GATC 1 cut(s) 493
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 3 cut(s) 648, 659, 884
Bst6I CTCTTC 2 cut(s) 21, 686
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 23, 229
BstDEI CTNAG 3 cut(s) 62, 273, 427
BstEII GGTNACC 1 cut(s) 128
BstF5I GGATG 3 cut(s) 80, 496, 871
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 2 cut(s) 297, 321
BstMBI GATC 1 cut(s) 493
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 3 cut(s) 63, 146, 755
BstNI CCWGG 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 29
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 500
BstV1I GCAGC 4 cut(s) 41, 728, 745, 758
BstZI CGGCCG 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 453
Bsu36I CCTNAGG 1 cut(s) 427
BsuI GTATCC 1 cut(s) 872
BsuRI GGCC 4 cut(s) 111, 156, 204, 231
BsuTUI ATCGAT 1 cut(s) 453
BtrI CACGTC 1 cut(s) 422
BtsCI GGATG 3 cut(s) 80, 496, 871
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 232, 484
Cac8I GCNNGC 2 cut(s) 23, 229
CaiI CAGNNNCTG 1 cut(s) 752
Cfr10I RCCGGY 4 cut(s) 152, 156, 227, 742
Cfr13I GGNCC 2 cut(s) 109, 702
ClaI ATCGAT 1 cut(s) 453
CseI GACGC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 788
CviAII CATG 3 cut(s) 10, 26, 690
CviQI GTAC 1 cut(s) 788
DdeI CTNAG 3 cut(s) 62, 273, 427
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
DraI TTTAAA 1 cut(s) 816
EaeI YGGCCR 3 cut(s) 154, 202, 229
EagI CGGCCG 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 21, 686
EarI CTCTTC 2 cut(s) 21, 686
Ecl136II GAGCTC 2 cut(s) 217, 554
EclXI CGGCCG 1 cut(s) 154
Eco24I GRGCYC 2 cut(s) 219, 556
Eco47I GGWCC 1 cut(s) 702
Eco52I CGGCCG 1 cut(s) 154
Eco53kI GAGCTC 2 cut(s) 217, 554
Eco57I CTGAAG 1 cut(s) 774
Eco72I CACGTG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 427
Eco91I GGTNACC 1 cut(s) 128
EcoICRI GAGCTC 2 cut(s) 217, 554
EcoO65I GGTNACC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 500
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 2 cut(s) 219, 556
FaeI CATG 3 cut(s) 13, 29, 693
FaqI GGGAC 1 cut(s) 408
FatI CATG 3 cut(s) 9, 25, 689
FauI CCCGC 1 cut(s) 320
FblI GTMKAC 1 cut(s) 739
Fnu4HI GCNGC 6 cut(s) 55, 246, 325, 717, 747, 759
FokI GGATG 3 cut(s) 67, 503, 878
FriOI GRGCYC 2 cut(s) 219, 556
Fsp4HI GCNGC 6 cut(s) 55, 246, 325, 717, 747, 759
FspBI CTAG 3 cut(s) 443, 825, 900
GluI GCNGC 6 cut(s) 55, 246, 325, 717, 747, 759
HaeIII GGCC 4 cut(s) 111, 156, 204, 231
HapII CCGG 6 cut(s) 153, 157, 212, 228, 743, 762
HgaI GACGC 1 cut(s) 371
Hin1II CATG 3 cut(s) 13, 29, 693
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 5 cut(s) 13, 505, 625, 686, 802
HpaII CCGG 6 cut(s) 153, 157, 212, 228, 743, 762
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 3 cut(s) 172, 702, 740
Hpy188I TCNGA 3 cut(s) 76, 197, 810
Hpy188III TCNNGA 4 cut(s) 84, 443, 572, 752
Hpy8I GTNNAC 3 cut(s) 172, 702, 740
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 3 cut(s) 648, 659, 884
HpyCH4IV ACGT 5 cut(s) 143, 168, 174, 421, 607
HpyCH4V TGCA 3 cut(s) 80, 237, 258
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 146, 755
HpyF3I CTNAG 3 cut(s) 62, 273, 427
HpySE526I ACGT 5 cut(s) 143, 168, 174, 421, 607
Hsp92II CATG 3 cut(s) 13, 29, 693
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 4 cut(s) 214, 551, 559, 754
Lsp1109I GCAGC 4 cut(s) 41, 728, 745, 758
LweI GCATC 4 cut(s) 67, 89, 309, 424
MaeI CTAG 3 cut(s) 443, 825, 900
MaeII ACGT 5 cut(s) 143, 168, 174, 421, 607
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 6 cut(s) 8, 37, 543, 673, 721, 797
MhlI GDGCHC 3 cut(s) 219, 556, 595
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 4 cut(s) 191, 629, 725, 857
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 2 cut(s) 7, 499
MmeI TCCRAC 1 cut(s) 833
Mox20I TGGCCA 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 82
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 204
MseI TTAA 2 cut(s) 581, 815
MslI CAYNNNNRTG 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 204
MspI CCGG 6 cut(s) 153, 157, 212, 228, 743, 762
MspR9I CCNGG 1 cut(s) 502
MvaI CCWGG 1 cut(s) 502
MwoI GCNNNNNNNGC 3 cut(s) 63, 146, 755
NaeI GCCGGC 1 cut(s) 229
NdeII GATC 1 cut(s) 493
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 3 cut(s) 13, 29, 693
NlaIV GGNNCC 1 cut(s) 110
NmeAIII GCCGAG 1 cut(s) 300
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 625, 686, 802
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 6 cut(s) 56, 247, 326, 718, 748, 760
PleI GAGTC 2 cut(s) 7, 499
PmaCI CACGTG 1 cut(s) 144
PmlI CACGTG 1 cut(s) 144
PpsI GAGTC 2 cut(s) 7, 499
Ppu21I YACGTR 1 cut(s) 144
PshBI ATTAAT 1 cut(s) 581
Psp124BI GAGCTC 2 cut(s) 219, 556
Psp1406I AACGTT 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 500
PspCI CACGTG 1 cut(s) 144
PspEI GGTNACC 1 cut(s) 128
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 109, 702
PstNI CAGNNNCTG 1 cut(s) 752
RsaI GTAC 1 cut(s) 789
RsaNI GTAC 1 cut(s) 788
RseI CAYNNNNRTG 1 cut(s) 489
SacI GAGCTC 2 cut(s) 219, 556
SaqAI TTAA 2 cut(s) 581, 815
SatI GCNGC 6 cut(s) 55, 246, 325, 717, 747, 759
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 2 cut(s) 109, 702
SchI GAGTC 2 cut(s) 7, 499
ScrFI CCNGG 1 cut(s) 502
SduI GDGCHC 3 cut(s) 219, 556, 595
SfaNI GCATC 4 cut(s) 67, 89, 309, 424
SinI GGWCC 1 cut(s) 702
SmiMI CAYNNNNRTG 1 cut(s) 489
Sse9I AATT 4 cut(s) 191, 629, 725, 857
SsiI CCGC 3 cut(s) 245, 324, 327
SspMI CTAG 3 cut(s) 443, 825, 900
SstI GAGCTC 2 cut(s) 219, 556
StyD4I CCNGG 1 cut(s) 500
TaaI ACNGT 3 cut(s) 648, 659, 884
TaiI ACGT 5 cut(s) 146, 171, 177, 424, 610
TaqI TCGA 5 cut(s) 344, 353, 453, 465, 684
TasI AATT 4 cut(s) 191, 629, 725, 857
TatI WGTACW 1 cut(s) 787
TauI GCSGC 2 cut(s) 248, 327
TfiI GAWTC 3 cut(s) 625, 686, 802
Tru1I TTAA 2 cut(s) 581, 815
Tru9I TTAA 2 cut(s) 581, 815
TscAI CASTG 2 cut(s) 239, 491
TseI GCWGC 4 cut(s) 54, 716, 746, 758
TspDTI ATGAA 4 cut(s) 37, 642, 678, 876
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 239, 491
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 702
VspI ATTAAT 1 cut(s) 581
XapI RAATTY 3 cut(s) 191, 725, 857
XbaI TCTAGA 1 cut(s) 442
XceI RCATGY 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 739
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 3 cut(s) 443, 825, 900
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.