MD07G1282800.v1.1

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000601
Physical Location & Seq
Reverse (-)
34583669 .. 34584571
903 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1282800.v1.1.491

Sequence Viewer

Length: 903 bp
ATGGCTGGAAACTCCCAAGCTTCATTTCTACTCCTTGTCCTCTTAGCACAGCTCGTTCGATTCGAACTCTGCTACGCCGGCGGCATCGCTATCTACTGGGGCCAAAACGGGAACGAAGGTACCCTAGCCGAAACATGTGCCACGGGGAGATACTCGTACGTGAACATAGCCTTCCTCAACAAATTTGGCGGCGGCCAGACCCCCGAAATCAACCTTGCAGGCCACTGCAACCCGGCATCCGGTGGTTGCGCTATCGTCAGCCGTGGCATAACGAGTTGCCACAGCCGAGGAATCAAGGTGTTGCTGTCTATCGGAGGCGGAGCTGGAAACTACTCTCTAGCATCAGCTGCTGATGCAAAAGATGTCGCTGATTATCTATGGAACAATTTCTTGGGCGGCAAGAAATCAACTTCTCGCCCCTTAGGCGACGCTGTTTTGGACGGTGTTGATTTTGACATAGAACTCGGTTCTACTCAGTACTGGGACGTCCTCGCGCGACGCCTCAAGGCGTATAGCAAGCCGAGAAGAAGTGTGTATGTAGCAGGAGCTCCTCAATGTCCGTTTCCTGATAAGTTTCTCGGGCGTGCTCTTAATACAGGGCTTTTCGACTATGTTTGGGTTCAGTTCTATAACAATCCTTCGTGCCAGTACAGCTCTGGTAGCACCGATAACCTTATAAACTCGTGGAAGCGATGGACTACATCGGTCAAGGCAGGGAAGATATTTATGGGGTTGCCGGCCGCTCCTGAGGCAGCCGGAAGTGGGTATATACCGGCTGCTGTGCTGAAATCGAAAATTCTGCCGGTGATAAAGAAGTCGTCGAAGTATGGTGGTGTGATGTTATGGTCCAAGTTTTATGATGATAAAAGTGGATATAGTTCTTCCATCATCAAAAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

301

Amino Acids

32.12

Weight (kDa)

9.27

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 29 - 248 2.4e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 677
AatII GACGTC 1 cut(s) 489
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 743
AccII CGCG 2 cut(s) 494, 496
AciI CCGC 6 cut(s) 81, 189, 192, 318, 396, 741
AcoI YGGCCR 2 cut(s) 193, 738
AcsI RAATTY 2 cut(s) 182, 795
AcyI GRCGYC 2 cut(s) 486, 499
AfaI GTAC 4 cut(s) 121, 158, 479, 650
AfiI CCNNNNNNNGG 2 cut(s) 239, 762
AflIII ACRYGT 1 cut(s) 134
AjuI GAANNNNNNNTTGG 4 cut(s) 9, 41, 374, 406
AluBI AGCT 6 cut(s) 20, 52, 323, 347, 548, 654
AluI AGCT 6 cut(s) 20, 52, 323, 347, 548, 654
Alw21I GWGCWC 2 cut(s) 550, 589
AlwNI CAGNNNCTG 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 4 cut(s) 100, 193, 220, 738
ApeKI GCWGC 3 cut(s) 347, 752, 776
ApoI RAATTY 2 cut(s) 182, 795
Asp700I GAANNNNTTC 1 cut(s) 386
Asp718I GGTACC 1 cut(s) 119
AspLEI GCGC 2 cut(s) 251, 496
AspS9I GGNCC 2 cut(s) 100, 846
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 817
AsuII TTCGAA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 1 cut(s) 846
AxyI CCTNAGG 2 cut(s) 421, 747
BaeI ACNNNNGTAYC 2 cut(s) 103, 136
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 682
Bbv12I GWGCWC 2 cut(s) 550, 589
BbvI GCAGC 3 cut(s) 334, 763, 764
BccI CCATC 2 cut(s) 687, 893
BceAI ACGGC 1 cut(s) 246
BcgI CGANNNNNNTGC 4 cut(s) 119, 153, 781, 815
BcnI CCSGG 1 cut(s) 233
BfaI CTAG 2 cut(s) 125, 338
BglI GCCNNNNNGGC 1 cut(s) 423
BisI GCNGC 8 cut(s) 82, 190, 193, 348, 397, 741, 753, 777
BlsI GCNGC 8 cut(s) 83, 191, 194, 349, 398, 742, 754, 778
BmcAI AGTACT 1 cut(s) 479
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 846
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 100, 846
BmiI GGNNCC 2 cut(s) 101, 121
BmrFI CCNGG 1 cut(s) 233
BmrI ACTGGG 2 cut(s) 106, 490
BmsI GCATC 4 cut(s) 93, 245, 343, 350
BmuI ACTGGG 2 cut(s) 106, 490
Bpu14I TTCGAA 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 160
BsaHI GRCGYC 2 cut(s) 486, 499
BsaJI CCNNGG 3 cut(s) 141, 262, 286
BsaWI WCCGGW 1 cut(s) 239
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 762
Bse118I RCCGGY 4 cut(s) 77, 736, 772, 802
Bse1I ACTGG 3 cut(s) 101, 485, 646
Bse21I CCTNAGG 2 cut(s) 421, 747
BseDI CCNNGG 3 cut(s) 141, 262, 286
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 239, 762
BseMII CTCAG 2 cut(s) 488, 738
BseNI ACTGG 3 cut(s) 101, 485, 646
BseRI GAGGAG 1 cut(s) 540
BseX3I CGGCCG 1 cut(s) 738
BseXI GCAGC 3 cut(s) 334, 763, 764
Bsh1236I CGCG 2 cut(s) 494, 496
Bsh1285I CGRYCG 1 cut(s) 741
BshFI GGCC 4 cut(s) 102, 195, 222, 740
BshNI GGYRCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 741
BsiHKAI GWGCWC 2 cut(s) 550, 589
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 7 cut(s) 78, 233, 240, 737, 756, 773, 803
BsiWI CGTACG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 2 cut(s) 239, 762
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 4 cut(s) 102, 195, 222, 740
BsoBI CYCGRG 1 cut(s) 578
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 550, 589
BspACI CCGC 6 cut(s) 81, 189, 192, 318, 396, 741
BspANI GGCC 4 cut(s) 102, 195, 222, 740
BspCNI CTCAG 2 cut(s) 487, 739
BspFNI CGCG 2 cut(s) 494, 496
BspLI GGNNCC 2 cut(s) 101, 121
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 743
BsrFI RCCGGY 4 cut(s) 77, 736, 772, 802
BsrI ACTGG 3 cut(s) 101, 485, 646
BssAI RCCGGY 4 cut(s) 77, 736, 772, 802
BssECI CCNNGG 3 cut(s) 141, 262, 286
BssNI GRCGYC 2 cut(s) 486, 499
BssSI CACGAG 1 cut(s) 682
Bst2BI CACGAG 1 cut(s) 682
Bst4CI ACNGT 1 cut(s) 443
BstACI GRCGYC 2 cut(s) 486, 499
BstAPI GCANNNNNTGC 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 5 cut(s) 79, 220, 518, 585, 738
BstDEI CTNAG 4 cut(s) 43, 421, 474, 747
BstDSI CCRYGG 2 cut(s) 141, 262
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 2 cut(s) 494, 496
BstHHI GCGC 2 cut(s) 251, 496
BstMCI CGRYCG 1 cut(s) 741
BstMWI GCNNNNNNNGC 7 cut(s) 78, 347, 353, 423, 651, 660, 749
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 2 cut(s) 494, 496
BstV1I GCAGC 3 cut(s) 334, 763, 764
BstZI CGGCCG 1 cut(s) 738
Bsu36I CCTNAGG 2 cut(s) 421, 747
BsuRI GGCC 4 cut(s) 102, 195, 222, 740
BtgI CCRYGG 2 cut(s) 141, 262
BtgZI GCGATG 2 cut(s) 70, 706
BtsCI GGATG 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 5 cut(s) 79, 220, 518, 585, 738
CaiI CAGNNNCTG 1 cut(s) 350
CfoI GCGC 2 cut(s) 251, 496
Cfr10I RCCGGY 4 cut(s) 77, 736, 772, 802
Cfr13I GGNCC 2 cut(s) 100, 846
CseI GACGC 2 cut(s) 437, 507
Csp6I GTAC 4 cut(s) 120, 157, 478, 649
CviAII CATG 1 cut(s) 135
CviQI GTAC 4 cut(s) 120, 157, 478, 649
DdeI CTNAG 4 cut(s) 43, 421, 474, 747
EaeI YGGCCR 2 cut(s) 193, 738
EagI CGGCCG 1 cut(s) 738
EciI GGCGGA 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 548
EclXI CGGCCG 1 cut(s) 738
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 846
Eco52I CGGCCG 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 548
Eco81I CCTNAGG 2 cut(s) 421, 747
Eco88I CYCGRG 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 550
FaeI CATG 1 cut(s) 138
FaqI GGGAC 1 cut(s) 497
FatI CATG 1 cut(s) 134
Fnu4HI GCNGC 8 cut(s) 82, 190, 193, 348, 397, 741, 753, 777
FokI GGATG 1 cut(s) 223
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 8 cut(s) 82, 190, 193, 348, 397, 741, 753, 777
FspBI CTAG 2 cut(s) 125, 338
GlaI GCGC 2 cut(s) 250, 495
GluI GCNGC 8 cut(s) 82, 190, 193, 348, 397, 741, 753, 777
HaeIII GGCC 4 cut(s) 102, 195, 222, 740
HapII CCGG 7 cut(s) 78, 233, 240, 737, 756, 773, 803
HgaI GACGC 2 cut(s) 437, 507
HhaI GCGC 2 cut(s) 251, 496
Hin1I GRCGYC 2 cut(s) 486, 499
Hin1II CATG 1 cut(s) 138
Hin6I GCGC 2 cut(s) 249, 494
HinP1I GCGC 2 cut(s) 249, 494
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 2 cut(s) 60, 291
HpaII CCGG 7 cut(s) 78, 233, 240, 737, 756, 773, 803
HphI GGTGA 1 cut(s) 817
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 2 cut(s) 566, 746
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 3 cut(s) 431, 501, 823
HpyAV CCTTC 3 cut(s) 110, 181, 648
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 2 cut(s) 159, 486
HpyCH4V TGCA 3 cut(s) 218, 228, 356
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 347, 353, 423, 651, 660, 749
HpyF3I CTNAG 4 cut(s) 43, 421, 474, 747
HpySE526I ACGT 2 cut(s) 159, 486
Hsp92I GRCGYC 2 cut(s) 486, 499
Hsp92II CATG 1 cut(s) 138
HspAI GCGC 2 cut(s) 249, 494
KpnI GGTACC 1 cut(s) 123
KroI GCCGGC 2 cut(s) 77, 736
KroNI GCCGGC 2 cut(s) 79, 738
LmnI GCTCC 4 cut(s) 320, 545, 553, 748
Lsp1109I GCAGC 3 cut(s) 334, 763, 764
LweI GCATC 4 cut(s) 93, 245, 343, 350
MaeI CTAG 2 cut(s) 125, 338
MaeII ACGT 2 cut(s) 159, 486
MbiI CCGCTC 1 cut(s) 743
MboII GAAGA 3 cut(s) 537, 730, 873
MhlI GDGCHC 2 cut(s) 550, 589
MluCI AATT 3 cut(s) 182, 385, 795
MnlI CCTC 8 cut(s) 50, 185, 281, 308, 500, 512, 561, 742
MreI CGCCGGCG 1 cut(s) 77
MroNI GCCGGC 2 cut(s) 77, 736
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 7 cut(s) 78, 233, 240, 737, 756, 773, 803
MspR9I CCNGG 1 cut(s) 233
MvnI CGCG 2 cut(s) 494, 496
MwoI GCNNNNNNNGC 7 cut(s) 78, 347, 353, 423, 651, 660, 749
NaeI GCCGGC 2 cut(s) 79, 738
NciI CCSGG 1 cut(s) 233
NgoMIV GCCGGC 2 cut(s) 77, 736
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 2 cut(s) 101, 121
NmeAIII GCCGAG 2 cut(s) 311, 546
NspI RCATGY 1 cut(s) 138
NspV TTCGAA 1 cut(s) 63
PciI ACATGT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdiI GCCGGC 2 cut(s) 79, 738
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 2 cut(s) 60, 291
Pfl23II CGTACG 1 cut(s) 156
PkrI GCNGC 8 cut(s) 83, 191, 194, 349, 398, 742, 754, 778
Ppu21I YACGTR 1 cut(s) 160
PscI ACATGT 1 cut(s) 134
PsiI TTATAA 1 cut(s) 677
Psp124BI GAGCTC 1 cut(s) 550
PspLI CGTACG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 101, 121
PspPI GGNCC 2 cut(s) 100, 846
PstNI CAGNNNCTG 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 4 cut(s) 121, 158, 479, 650
RsaNI GTAC 4 cut(s) 120, 157, 478, 649
SacI GAGCTC 1 cut(s) 550
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 8 cut(s) 82, 190, 193, 348, 397, 741, 753, 777
Sau96I GGNCC 2 cut(s) 100, 846
ScaI AGTACT 1 cut(s) 479
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 550, 589
SfaNI GCATC 4 cut(s) 93, 245, 343, 350
SfuI TTCGAA 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 77
SinI GGWCC 1 cut(s) 846
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 3 cut(s) 182, 385, 795
SsiI CCGC 6 cut(s) 81, 189, 192, 318, 396, 741
SspMI CTAG 2 cut(s) 125, 338
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 2 cut(s) 162, 489
TaqI TCGA 5 cut(s) 58, 63, 606, 791, 821
TaqII GACCGA 1 cut(s) 694
TasI AATT 3 cut(s) 182, 385, 795
TatI WGTACW 2 cut(s) 477, 648
TauI GCSGC 5 cut(s) 84, 192, 195, 399, 743
TfiI GAWTC 2 cut(s) 60, 291
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 1 cut(s) 230
TseI GCWGC 3 cut(s) 347, 752, 776
TspDTI ATGAA 1 cut(s) 12
TspGWI ACGGA 1 cut(s) 549
TspRI CASTG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 846
XapI RAATTY 2 cut(s) 182, 795
XceI RCATGY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 2 cut(s) 125, 338
ZraI GACGTC 1 cut(s) 487
ZrmI AGTACT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.