RLG00000026376

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000601
Physical Location & Seq
Forward (+)
2493619 .. 2494514
896 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026376

Sequence Viewer

Length: 732 bp
ATGGCTTCAATTTCAGTAGCAGCATTGCTATCTTTAATGACACTACTACTTCTGGCGATTGGGTCTAATGCAGGCGGAATCGCGATTTACTGGGGCCAAAATGGAAATGAAGGCACATTCAAACATGTGCCTCAGGAAACTACAAGTGGTGCTCAAGGCTACTCTCTAGCTTCATCTGAAGATGCCCGCCAAGTTGGTGCTTACTTGTGGAACAACTTCTTGGGAGGACACTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGCGGACTTCGACATTGAAGGAGGGAATGACCAGTACTATGATGACCTTGCTAGGTACCTTTTGGCGCAGAGCAAGAAGGGCAGCACGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTTAAGACAGGCCTATTTGACTATGTTTGGGTTCAATTCTACAACAACCCTCCTTGTCAGTACACTTCTGGTGATGTCAGCAATCTCAAAAATGCTTGGAAGCAATGGACTTCAGCCGTTCCTGCACAGAAGATCTTCTTAGGACTCCCTGCTGCACCTCAAGCTGGTGGTAGCGGATTCATTCCTGCTGCTGCTCTCACTTTAGATGTCCTTCCGGGTATCAAAAATTCAGCTAAATATGGGGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTTGATGGATACAGCTCCTCCATTAAGAATTATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

244

Amino Acids

25.94

Weight (kDa)

5.04

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 52 - 191 7.7e-11 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 324
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 1 cut(s) 83
AciI CCGC 4 cut(s) 75, 187, 272, 591
AcsI RAATTY 1 cut(s) 643
AcuI CTGAAG 2 cut(s) 198, 513
AfaI GTAC 3 cut(s) 305, 326, 479
AfiI CCNNNNNNNGG 2 cut(s) 240, 581
AflII CTTAAG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 5 cut(s) 9, 121, 240, 287, 452
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 4 cut(s) 170, 581, 650, 708
AluI AGCT 4 cut(s) 170, 581, 650, 708
Alw21I GWGCWC 1 cut(s) 154
AoxI GGCC 3 cut(s) 94, 242, 427
ApeKI GCWGC 6 cut(s) 20, 351, 374, 569, 605, 608
ApoI RAATTY 1 cut(s) 643
Asp700I GAANNNNTTC 2 cut(s) 215, 551
Asp718I GGTACC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 2 cut(s) 94, 675
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 1 cut(s) 500
AvaII GGWCC 1 cut(s) 675
AxyI CCTNAGG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 6 cut(s) 32, 361, 363, 556, 592, 595
BccI CCATC 2 cut(s) 260, 692
BceAI ACGGC 2 cut(s) 229, 518
BciVI GTATCC 1 cut(s) 695
BcnI CCSGG 1 cut(s) 633
BfaI CTAG 3 cut(s) 167, 321, 730
BfrI CTTAAG 1 cut(s) 419
BfuI GTATCC 1 cut(s) 695
BglII AGATCT 1 cut(s) 549
BisI GCNGC 6 cut(s) 21, 352, 375, 570, 606, 609
BlsI GCNGC 6 cut(s) 22, 353, 376, 571, 607, 610
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 633
Bme18I GGWCC 1 cut(s) 675
BmgT120I GGNCC 2 cut(s) 94, 675
BmiI GGNNCC 2 cut(s) 95, 326
BmrFI CCNGG 1 cut(s) 633
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 3 cut(s) 172, 244, 388
BmuI ACTGGG 1 cut(s) 100
BpuEI CTTGAG 2 cut(s) 138, 561
BpuMI CCSGG 1 cut(s) 633
BsaXI ACNNNNNCTCC 6 cut(s) 243, 273, 361, 391, 695, 725
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 581
Bse1I ACTGG 2 cut(s) 95, 301
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 2 cut(s) 23, 527
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 240, 581
BseMI GCAATG 2 cut(s) 23, 527
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 95, 301
BseRI GAGGAG 2 cut(s) 223, 700
BseXI GCAGC 6 cut(s) 32, 361, 363, 556, 592, 595
BsgI GTGCAG 2 cut(s) 525, 555
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 96, 244, 429
BshNI GGYRCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 632
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 240, 581
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 3 cut(s) 96, 244, 429
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 549, 691
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 4 cut(s) 75, 187, 272, 591
BspANI GGCC 3 cut(s) 96, 244, 429
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 95, 326
BspT107I GGYRCC 1 cut(s) 324
BspTI CTTAAG 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 23, 527
BsrI ACTGG 2 cut(s) 95, 301
BssMI GATC 2 cut(s) 549, 691
Bst4CI ACNGT 1 cut(s) 384
Bst6I CTCTTC 1 cut(s) 241
BstAFI CTTAAG 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 73, 187
BstDEI CTNAG 2 cut(s) 132, 556
BstENI CCTNNNNNAGG 1 cut(s) 238
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 2 cut(s) 552, 694
BstMBI GATC 2 cut(s) 549, 691
BstMWI GCNNNNNNNGC 3 cut(s) 348, 539, 578
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 631
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 6 cut(s) 32, 361, 363, 556, 592, 595
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 132
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 3 cut(s) 96, 244, 429
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 389
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 73, 187
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 2 cut(s) 94, 675
Csp6I GTAC 3 cut(s) 304, 325, 478
CviAII CATG 2 cut(s) 125, 667
CviQI GTAC 3 cut(s) 304, 325, 478
DdeI CTNAG 2 cut(s) 132, 556
DpnI GATC 2 cut(s) 551, 693
DpnII GATC 2 cut(s) 549, 691
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
EciI GGCGGA 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 675
Eco57I CTGAAG 2 cut(s) 198, 513
Eco81I CCTNAGG 1 cut(s) 132
EcoNI CCTNNNNNAGG 1 cut(s) 238
FaeI CATG 2 cut(s) 128, 670
FaiI YATR 8 cut(s) 126, 309, 405, 441, 657, 668, 687, 726
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 1 cut(s) 372
FatI CATG 2 cut(s) 124, 666
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 6 cut(s) 21, 352, 375, 570, 606, 609
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 6 cut(s) 21, 352, 375, 570, 606, 609
FspBI CTAG 3 cut(s) 167, 321, 730
GlaI GCGC 1 cut(s) 336
GluI GCNGC 6 cut(s) 21, 352, 375, 570, 606, 609
HaeIII GGCC 3 cut(s) 96, 244, 429
HapII CCGG 1 cut(s) 632
HhaI GCGC 1 cut(s) 337
Hin1II CATG 2 cut(s) 128, 670
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HinfI GANTC 3 cut(s) 78, 561, 594
HpaII CCGG 1 cut(s) 632
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 2 cut(s) 364, 480
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 4 cut(s) 82, 134, 395, 695
Hpy8I GTNNAC 2 cut(s) 364, 480
HpyAV CCTTC 4 cut(s) 104, 281, 340, 638
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4V TGCA 4 cut(s) 71, 416, 542, 572
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 539, 578
HpyF3I CTNAG 2 cut(s) 132, 556
Hsp92II CATG 2 cut(s) 128, 670
HspAI GCGC 1 cut(s) 335
KpnI GGTACC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 549, 691
LmnI GCTCC 3 cut(s) 269, 382, 713
Lsp1109I GCAGC 6 cut(s) 32, 361, 363, 556, 592, 595
LweI GCATC 3 cut(s) 172, 244, 388
MaeI CTAG 3 cut(s) 167, 321, 730
MalI GATC 2 cut(s) 551, 693
MbiI CCGCTC 1 cut(s) 272
MboI GATC 2 cut(s) 549, 691
MboII GAAGA 4 cut(s) 191, 228, 544, 559
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 4 cut(s) 9, 452, 643, 721
MlyI GAGTC 1 cut(s) 555
MmeI TCCRAC 1 cut(s) 388
MnlI CCTC 7 cut(s) 141, 218, 244, 284, 477, 585, 721
MroXI GAANNNNTTC 2 cut(s) 215, 551
MseI TTAA 3 cut(s) 35, 420, 717
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 1 cut(s) 633
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 348, 539, 578
NciI CCSGG 1 cut(s) 633
NdeII GATC 2 cut(s) 549, 691
NlaIII CATG 2 cut(s) 128, 670
NlaIV GGNNCC 2 cut(s) 95, 326
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 128
PceI AGGCCT 1 cut(s) 429
PciI ACATGT 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 215, 551
PfeI GAWTC 2 cut(s) 78, 594
PkrI GCNGC 6 cut(s) 22, 353, 376, 571, 607, 610
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PscI ACATGT 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 95, 326
PspPI GGNCC 2 cut(s) 94, 675
PsuI RGATCY 1 cut(s) 549
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 3 cut(s) 305, 326, 479
RsaNI GTAC 3 cut(s) 304, 325, 478
SaqAI TTAA 3 cut(s) 35, 420, 717
SatI GCNGC 6 cut(s) 21, 352, 375, 570, 606, 609
Sau3AI GATC 2 cut(s) 549, 691
Sau96I GGNCC 2 cut(s) 94, 675
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 1 cut(s) 555
ScrFI CCNGG 1 cut(s) 633
SduI GDGCHC 1 cut(s) 154
SetI ASST 8 cut(s) 172, 318, 326, 330, 577, 583, 652, 710
SfaNI GCATC 3 cut(s) 172, 244, 388
SinI GGWCC 1 cut(s) 675
SmlI CTYRAG 3 cut(s) 153, 419, 576
SmoI CTYRAG 3 cut(s) 153, 419, 576
Sse9I AATT 4 cut(s) 9, 452, 643, 721
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 4 cut(s) 75, 187, 272, 591
SspMI CTAG 3 cut(s) 167, 321, 730
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 631
TaaI ACNGT 1 cut(s) 384
TaqI TCGA 1 cut(s) 279
TasI AATT 4 cut(s) 9, 452, 643, 721
TatI WGTACW 2 cut(s) 303, 477
TfiI GAWTC 2 cut(s) 78, 594
Tru1I TTAA 3 cut(s) 35, 420, 717
Tru9I TTAA 3 cut(s) 35, 420, 717
TscAI CASTG 1 cut(s) 389
TseI GCWGC 6 cut(s) 20, 351, 374, 569, 605, 608
TspDTI ATGAA 3 cut(s) 123, 162, 586
TspRI CASTG 1 cut(s) 389
Vha464I CTTAAG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 675
XagI CCTNNNNNAGG 1 cut(s) 238
XapI RAATTY 1 cut(s) 643
XceI RCATGY 1 cut(s) 128
XmnI GAANNNNTTC 2 cut(s) 215, 551
XspI CTAG 3 cut(s) 167, 321, 730
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.