pycom07g25710

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000601
Physical Location & Seq
Reverse (-)
25931057 .. 25931962
906 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25710.1

Sequence Viewer

Length: 906 bp
ATGGCTGGAAACTCCCAAGCTCCATTTCTACTCCTTATCCTCTTAGCGCAGCTCGTTGGATTCGAACTCTGCGACGCCGGCGCCGGCATCGCCATCTACTGGGGCCAAAACGGGAATGAAGGTACCCTAGCCGAAACATGTGCCACGGGGAAATACTCGTACGTGAACATAGCCTTCCTCAACAAATTTGGCAGCGGCCAGACCCCCGAAATCAACCTTGCAGGCCACTGCAACCCGGCATCCGGTGGTTGCGCTATCGTCAGCAGTGGCATAACGAGTTGCCAAAGCCGAGGAATCAAGGTGTTGCTGTCTATCGGAGGCGGAGTTGGAAACTACTCTCTAGCATCAGCTGCTGATGCAAAAAATGTCGCTGGTTATCTATGGAACAATTTCTTGGGCGGCAAGAAATCAACTTCTCGCCCCTTAGGCGACGCTGTTTTGGATGGTGTTGATTTTGACATAGAGCTCGGTTCTACTCAGTACTGGGACGTCCTCGCGCGACGCCTCAAGGCGTATAGCAAGCCGAGAAGAAGTGTGTATGTAGCAGGAGCTCCTCAATGTCCGTTTCCTGATAAGTTTCTCGGGGATGCTCTTAATACAGGGCTTTTCGACTATGTTTGGGTTCAGTTCTATAACAATCCTTCGTGCCAGTACAGCTCGGGTAGCACCGATAACCTTATAAAGTCGTGGAACCGATGGACTACATCGGTCAAGGCAGGGAAGATATTTATGGGGTTGCCGGCCGCTCCTGAGGCGGCCGGAAGTGGGTATATACCGGCTGCTGTGCTGAAATCGAAAATTCTACCGGTCATAAAGAAGTCGTCGAAGTATGGTGGTGTGATGTTATGGTCCAAGTTTTATGATGATAAAAGTGGATATAGTTCTTCCATTATCGGCAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

302

Amino Acids

31.85

Weight (kDa)

8.94

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 30 - 249 2.1e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 680
AatII GACGTC 1 cut(s) 492
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 2 cut(s) 80, 122
AccB7I CCANNNNNTGG 1 cut(s) 99
AccBSI CCGCTC 1 cut(s) 746
AccII CGCG 2 cut(s) 497, 499
AciI CCGC 5 cut(s) 195, 321, 399, 744, 755
AcoI YGGCCR 3 cut(s) 196, 741, 756
AcsI RAATTY 2 cut(s) 185, 798
AcyI GRCGYC 4 cut(s) 75, 81, 489, 502
AfaI GTAC 4 cut(s) 124, 161, 482, 653
AfiI CCNNNNNNNGG 3 cut(s) 99, 242, 765
AflIII ACRYGT 1 cut(s) 137
AgeI ACCGGT 1 cut(s) 805
AjuI GAANNNNNNNTTGG 4 cut(s) 9, 41, 377, 409
AluBI AGCT 6 cut(s) 20, 52, 350, 466, 551, 657
AluI AGCT 6 cut(s) 20, 52, 350, 466, 551, 657
Alw21I GWGCWC 2 cut(s) 468, 553
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 2 cut(s) 581, 658
AoxI GGCC 5 cut(s) 103, 196, 223, 741, 756
ApeKI GCWGC 4 cut(s) 49, 192, 350, 779
ApoI RAATTY 2 cut(s) 185, 798
AsiGI ACCGGT 1 cut(s) 805
Asp700I GAANNNNTTC 1 cut(s) 389
Asp718I GGTACC 1 cut(s) 122
AspLEI GCGC 4 cut(s) 49, 83, 254, 499
AspS9I GGNCC 2 cut(s) 103, 849
AsuC2I CCSGG 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 63
AvaI CYCGRG 2 cut(s) 581, 658
AvaII GGWCC 1 cut(s) 849
AxyI CCTNAGG 2 cut(s) 424, 750
BanI GGYRCC 2 cut(s) 80, 122
BanII GRGCYC 2 cut(s) 468, 553
Bbv12I GWGCWC 2 cut(s) 468, 553
BbvI GCAGC 4 cut(s) 61, 204, 337, 766
BccI CCATC 3 cut(s) 101, 437, 690
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BcnI CCSGG 1 cut(s) 236
BfaI CTAG 2 cut(s) 128, 341
BfoI RGCGCY 1 cut(s) 84
BglI GCCNNNNNGGC 1 cut(s) 426
BisI GCNGC 8 cut(s) 50, 193, 196, 351, 400, 744, 756, 780
BlsI GCNGC 8 cut(s) 51, 194, 197, 352, 401, 745, 757, 781
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 849
BmeT110I CYCGRG 2 cut(s) 581, 658
BmgT120I GGNCC 2 cut(s) 103, 849
BmiI GGNNCC 4 cut(s) 82, 104, 124, 692
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 2 cut(s) 109, 493
BmsI GCATC 5 cut(s) 96, 248, 346, 353, 577
BmuI ACTGGG 2 cut(s) 109, 493
Bpu14I TTCGAA 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 236
BsaAI YACGTR 1 cut(s) 163
BsaHI GRCGYC 4 cut(s) 75, 81, 489, 502
BsaJI CCNNGG 2 cut(s) 144, 289
BsaWI WCCGGW 2 cut(s) 242, 805
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 242, 765
Bse118I RCCGGY 5 cut(s) 77, 83, 739, 775, 805
Bse1I ACTGG 3 cut(s) 104, 488, 649
Bse21I CCTNAGG 2 cut(s) 424, 750
BseDI CCNNGG 2 cut(s) 144, 289
BseGI GGATG 3 cut(s) 239, 448, 592
BseLI CCNNNNNNNGG 3 cut(s) 99, 242, 765
BseMII CTCAG 2 cut(s) 491, 741
BseNI ACTGG 3 cut(s) 104, 488, 649
BseRI GAGGAG 1 cut(s) 543
BseX3I CGGCCG 2 cut(s) 741, 756
BseXI GCAGC 4 cut(s) 61, 204, 337, 766
Bsh1236I CGCG 2 cut(s) 497, 499
Bsh1285I CGRYCG 2 cut(s) 744, 759
BshFI GGCC 5 cut(s) 105, 198, 225, 743, 758
BshNI GGYRCC 2 cut(s) 80, 122
BshTI ACCGGT 1 cut(s) 805
BsiEI CGRYCG 2 cut(s) 744, 759
BsiHKAI GWGCWC 2 cut(s) 468, 553
BsiHKCI CYCGRG 2 cut(s) 581, 658
BsiSI CCGG 8 cut(s) 78, 84, 236, 243, 740, 759, 776, 806
BsiWI CGTACG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 3 cut(s) 99, 242, 765
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 5 cut(s) 105, 198, 225, 743, 758
BsoBI CYCGRG 2 cut(s) 581, 658
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 468, 553
BspACI CCGC 5 cut(s) 195, 321, 399, 744, 755
BspANI GGCC 5 cut(s) 105, 198, 225, 743, 758
BspCNI CTCAG 2 cut(s) 490, 742
BspFNI CGCG 2 cut(s) 497, 499
BspLI GGNNCC 4 cut(s) 82, 104, 124, 692
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 80, 122
BsrBI CCGCTC 1 cut(s) 746
BsrFI RCCGGY 5 cut(s) 77, 83, 739, 775, 805
BsrI ACTGG 3 cut(s) 104, 488, 649
BssAI RCCGGY 5 cut(s) 77, 83, 739, 775, 805
BssECI CCNNGG 2 cut(s) 144, 289
BssNI GRCGYC 4 cut(s) 75, 81, 489, 502
BstACI GRCGYC 4 cut(s) 75, 81, 489, 502
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 5 cut(s) 79, 85, 223, 521, 741
BstDEI CTNAG 4 cut(s) 43, 424, 477, 750
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 3 cut(s) 239, 448, 592
BstFNI CGCG 2 cut(s) 497, 499
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 4 cut(s) 49, 83, 254, 499
BstMCI CGRYCG 2 cut(s) 744, 759
BstMWI GCNNNNNNNGC 8 cut(s) 78, 89, 350, 356, 426, 654, 663, 752
BstNSI RCATGY 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 234
BstUI CGCG 2 cut(s) 497, 499
BstV1I GCAGC 4 cut(s) 61, 204, 337, 766
BstZI CGGCCG 2 cut(s) 741, 756
Bsu36I CCTNAGG 2 cut(s) 424, 750
BsuRI GGCC 5 cut(s) 105, 198, 225, 743, 758
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 3 cut(s) 239, 448, 592
BtsI GCAGTG 3 cut(s) 226, 271, 904
BtsIMutI CAGTG 3 cut(s) 226, 271, 904
Cac8I GCNNGC 5 cut(s) 79, 85, 223, 521, 741
CaiI CAGNNNCTG 1 cut(s) 353
CfoI GCGC 4 cut(s) 49, 83, 254, 499
Cfr10I RCCGGY 5 cut(s) 77, 83, 739, 775, 805
Cfr13I GGNCC 2 cut(s) 103, 849
CseI GACGC 3 cut(s) 83, 440, 510
Csp6I GTAC 4 cut(s) 123, 160, 481, 652
CspAI ACCGGT 1 cut(s) 805
CviAII CATG 1 cut(s) 138
CviQI GTAC 4 cut(s) 123, 160, 481, 652
DdeI CTNAG 4 cut(s) 43, 424, 477, 750
DinI GGCGCC 1 cut(s) 82
EaeI YGGCCR 3 cut(s) 196, 741, 756
EagI CGGCCG 2 cut(s) 741, 756
EciI GGCGGA 1 cut(s) 336
Ecl136II GAGCTC 2 cut(s) 466, 551
EclXI CGGCCG 2 cut(s) 741, 756
Eco24I GRGCYC 2 cut(s) 468, 553
Eco47I GGWCC 1 cut(s) 849
Eco52I CGGCCG 2 cut(s) 741, 756
Eco53kI GAGCTC 2 cut(s) 466, 551
Eco81I CCTNAGG 2 cut(s) 424, 750
Eco88I CYCGRG 2 cut(s) 581, 658
EcoICRI GAGCTC 2 cut(s) 466, 551
EcoT38I GRGCYC 2 cut(s) 468, 553
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
FaeI CATG 1 cut(s) 141
FaqI GGGAC 1 cut(s) 500
FatI CATG 1 cut(s) 137
Fnu4HI GCNGC 8 cut(s) 50, 193, 196, 351, 400, 744, 756, 780
FokI GGATG 3 cut(s) 226, 455, 599
FriOI GRGCYC 2 cut(s) 468, 553
Fsp4HI GCNGC 8 cut(s) 50, 193, 196, 351, 400, 744, 756, 780
FspBI CTAG 2 cut(s) 128, 341
GlaI GCGC 4 cut(s) 48, 82, 253, 498
GluI GCNGC 8 cut(s) 50, 193, 196, 351, 400, 744, 756, 780
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 5 cut(s) 105, 198, 225, 743, 758
HapII CCGG 8 cut(s) 78, 84, 236, 243, 740, 759, 776, 806
HgaI GACGC 3 cut(s) 83, 440, 510
HhaI GCGC 4 cut(s) 49, 83, 254, 499
Hin1I GRCGYC 4 cut(s) 75, 81, 489, 502
Hin1II CATG 1 cut(s) 141
Hin6I GCGC 4 cut(s) 47, 81, 252, 497
HinP1I GCGC 4 cut(s) 47, 81, 252, 497
HinfI GANTC 2 cut(s) 60, 294
HpaII CCGG 8 cut(s) 78, 84, 236, 243, 740, 759, 776, 806
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 569, 749
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 4 cut(s) 77, 434, 504, 826
HpyAV CCTTC 3 cut(s) 113, 184, 651
HpyCH4IV ACGT 2 cut(s) 162, 489
HpyCH4V TGCA 3 cut(s) 221, 231, 359
HpyF10VI GCNNNNNNNGC 8 cut(s) 78, 89, 350, 356, 426, 654, 663, 752
HpyF3I CTNAG 4 cut(s) 43, 424, 477, 750
HpySE526I ACGT 2 cut(s) 162, 489
Hsp92I GRCGYC 4 cut(s) 75, 81, 489, 502
Hsp92II CATG 1 cut(s) 141
HspAI GCGC 4 cut(s) 47, 81, 252, 497
KasI GGCGCC 1 cut(s) 80
KpnI GGTACC 1 cut(s) 126
KroI GCCGGC 3 cut(s) 77, 83, 739
KroNI GCCGGC 3 cut(s) 79, 85, 741
LmnI GCTCC 4 cut(s) 25, 548, 556, 751
Lsp1109I GCAGC 4 cut(s) 61, 204, 337, 766
LweI GCATC 5 cut(s) 96, 248, 346, 353, 577
MaeI CTAG 2 cut(s) 128, 341
MaeII ACGT 2 cut(s) 162, 489
MbiI CCGCTC 1 cut(s) 746
MboII GAAGA 3 cut(s) 540, 733, 876
MhlI GDGCHC 2 cut(s) 468, 553
MluCI AATT 3 cut(s) 185, 388, 798
Mly113I GGCGCC 1 cut(s) 81
MmeI TCCRAC 2 cut(s) 37, 307
MnlI CCTC 8 cut(s) 50, 188, 284, 311, 503, 515, 564, 745
MreI CGCCGGCG 1 cut(s) 77
MroNI GCCGGC 3 cut(s) 77, 83, 739
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 1 cut(s) 594
MspA1I CMGCKG 2 cut(s) 195, 350
MspI CCGG 8 cut(s) 78, 84, 236, 243, 740, 759, 776, 806
MspR9I CCNGG 1 cut(s) 236
MvnI CGCG 2 cut(s) 497, 499
MwoI GCNNNNNNNGC 8 cut(s) 78, 89, 350, 356, 426, 654, 663, 752
NaeI GCCGGC 3 cut(s) 79, 85, 741
NarI GGCGCC 1 cut(s) 81
NciI CCSGG 1 cut(s) 236
NgoMIV GCCGGC 3 cut(s) 77, 83, 739
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 4 cut(s) 82, 104, 124, 692
NmeAIII GCCGAG 2 cut(s) 314, 549
NspI RCATGY 1 cut(s) 141
NspV TTCGAA 1 cut(s) 63
PciI ACATGT 1 cut(s) 137
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 69
PdiI GCCGGC 3 cut(s) 79, 85, 741
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 60, 294
Pfl23II CGTACG 1 cut(s) 159
PflMI CCANNNNNTGG 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 805
PkrI GCNGC 8 cut(s) 51, 194, 197, 352, 401, 745, 757, 781
PluTI GGCGCC 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 163
PscI ACATGT 1 cut(s) 137
PsiI TTATAA 1 cut(s) 680
Psp124BI GAGCTC 2 cut(s) 468, 553
PspLI CGTACG 1 cut(s) 159
PspN4I GGNNCC 4 cut(s) 82, 104, 124, 692
PspPI GGNCC 2 cut(s) 103, 849
PstNI CAGNNNCTG 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 4 cut(s) 124, 161, 482, 653
RsaNI GTAC 4 cut(s) 123, 160, 481, 652
SacI GAGCTC 2 cut(s) 468, 553
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 8 cut(s) 50, 193, 196, 351, 400, 744, 756, 780
Sau96I GGNCC 2 cut(s) 103, 849
ScaI AGTACT 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 2 cut(s) 468, 553
SfaNI GCATC 5 cut(s) 96, 248, 346, 353, 577
SfoI GGCGCC 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 77
SinI GGWCC 1 cut(s) 849
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 3 cut(s) 185, 388, 798
SsiI CCGC 5 cut(s) 195, 321, 399, 744, 755
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 128, 341
SstI GAGCTC 2 cut(s) 468, 553
StyD4I CCNGG 1 cut(s) 234
TaiI ACGT 2 cut(s) 165, 492
TaqI TCGA 4 cut(s) 63, 609, 794, 824
TaqII GACCGA 1 cut(s) 697
TasI AATT 3 cut(s) 185, 388, 798
TatI WGTACW 2 cut(s) 480, 651
TauI GCSGC 4 cut(s) 198, 402, 746, 758
TfiI GAWTC 2 cut(s) 60, 294
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 3 cut(s) 233, 271, 904
TseI GCWGC 4 cut(s) 49, 192, 350, 779
TspDTI ATGAA 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 3 cut(s) 233, 271, 904
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 849
XapI RAATTY 2 cut(s) 185, 798
XceI RCATGY 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 2 cut(s) 128, 341
ZraI GACGTC 1 cut(s) 490
ZrmI AGTACT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.