Rw1G038190

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000601
Physical Location & Seq
Reverse (-)
65790307 .. 65791419
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038190.1

Sequence Viewer

Length: 912 bp
ATGGCCACGTCTTCTATTCTCTCACTCGTCCTAATCTCATTTCTGGTCCTAATCCAACCCTCTCACGGTGGTGGCATAGCCATCTACTGGGGCCAAAACGGGAACGAAGGTACCCTAAAACAAACCTGCGCCACCGGAAAATACAAGTACGTGAACATAGCCTTCCTCAACGTCTTCGGCAGCGGCCAAACACCACAAATCAACCTAGCAGGCCACTGCAACCCAGTCTCAAATGGTTGCGCCGCCGTCGGCCCCGAAGTCACATTCTGTCAGAGCCTGGGAGTCAAGGTGTTCCTCTCCCTCGGCGGCGGAATCGGAAACTACTCTCTATCTTCTGTTTCTGACGCAAAAGATGTAGCCAATTATCTATGGAACAGTTTCCTGGGGGCAAAAGGAAACGGCAGAGACAAGTCAACTACTACACGTCCCTTCGGCGACGCCGTTTTGGATGGGATAGATTTCGACATAGAGCAAGGTGCAAATCCATATTGGGATGACCTTGCACGTTATCTCAAGGCGTATAGCAAACCAAGAAGAGCTGTGTACTTAGCTGCAGCTCCTCAGTGTCCATTTCCCGATGCGTTCGTCGGCGGTGCGATTAGTACAGGGCTTTTCGACTATGTTTGGGTTCAGTTCTACAACAATCCTCCATGCCAGTATAGCTCAGGTAACACTGACAATATTCTAAACTCGTGGAATAAATGGACTACGTCTATACAAGCAGGGAAGATATTCCTGGGGTTGCCGGCGGCTCCAGCGGCGGCTGGAAGTGGGTTCATTCCGGCTACGGTGCTGAATTCTAAGATACTTCCGGTGATAAAGAAGTCGTCGAAGTATGGTGGAGTGATGTTGTGGTCAAAGTATTATGATGATCAAAGTGGTTATAGTTCCTCCATTATCAAAAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

303

Amino Acids

32.33

Weight (kDa)

8.76

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 26 - 251 7.2e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 134
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 87
AciI CCGC 8 cut(s) 183, 243, 306, 309, 591, 749, 758, 761
AcoI YGGCCR 2 cut(s) 3, 184
AcsI RAATTY 1 cut(s) 796
AcyI GRCGYC 1 cut(s) 438
AfaI GTAC 4 cut(s) 112, 149, 545, 604
AfiI CCNNNNNNNGG 2 cut(s) 65, 87
AflIII ACRYGT 1 cut(s) 422
AjiI CACGTC 2 cut(s) 9, 425
AjnI CCWGG 3 cut(s) 276, 381, 735
AleI CACNNNNGTG 1 cut(s) 69
AluBI AGCT 4 cut(s) 539, 551, 557, 663
AluI AGCT 4 cut(s) 539, 551, 557, 663
Alw26I GTCTC 2 cut(s) 232, 399
AlwNI CAGNNNCTG 1 cut(s) 277
AoxI GGCC 5 cut(s) 3, 91, 184, 211, 250
ApeKI GCWGC 3 cut(s) 180, 551, 554
ApoI RAATTY 1 cut(s) 796
Asp700I GAANNNNTTC 2 cut(s) 377, 731
Asp718I GGTACC 1 cut(s) 110
AspLEI GCGC 2 cut(s) 131, 242
AspS9I GGNCC 3 cut(s) 46, 91, 251
AsuHPI GGTGA 1 cut(s) 826
AvaII GGWCC 1 cut(s) 46
BaeI ACNNNNGTAYC 2 cut(s) 94, 127
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 110
BauI CACGAG 1 cut(s) 691
BbsI GAAGAC 2 cut(s) 3, 166
BbvI GCAGC 3 cut(s) 192, 538, 566
BccI CCATC 2 cut(s) 89, 443
BceAI ACGGC 3 cut(s) 230, 415, 425
BciT130I CCWGG 3 cut(s) 278, 383, 737
BclI TGATCA 1 cut(s) 871
BcoDI GTCTC 2 cut(s) 232, 399
BfaI CTAG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 9 cut(s) 181, 184, 243, 307, 552, 555, 750, 759, 762
BlsI GCNGC 9 cut(s) 182, 185, 244, 308, 553, 556, 751, 760, 763
Bme1390I CCNGG 3 cut(s) 278, 383, 737
Bme18I GGWCC 1 cut(s) 46
BmgBI CACGTC 2 cut(s) 9, 425
BmgT120I GGNCC 3 cut(s) 46, 91, 251
BmiI GGNNCC 4 cut(s) 92, 112, 253, 753
BmrFI CCNGG 3 cut(s) 278, 383, 737
BmrI ACTGGG 2 cut(s) 97, 218
BmsI GCATC 1 cut(s) 568
BmuI ACTGGG 2 cut(s) 97, 218
BpiI GAAGAC 2 cut(s) 3, 166
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 664
BpuEI CTTGAG 1 cut(s) 497
BsaAI YACGTR 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 438
BsaJI CCNNGG 4 cut(s) 277, 301, 382, 736
BsaWI WCCGGW 2 cut(s) 134, 811
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 87
Bse118I RCCGGY 1 cut(s) 745
Bse1I ACTGG 3 cut(s) 92, 224, 655
BseBI CCWGG 3 cut(s) 278, 383, 737
BseDI CCNNGG 4 cut(s) 277, 301, 382, 736
BseGI GGATG 2 cut(s) 454, 499
BseLI CCNNNNNNNGG 2 cut(s) 65, 87
BseMII CTCAG 2 cut(s) 575, 678
BseNI ACTGG 3 cut(s) 92, 224, 655
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 3 cut(s) 192, 538, 566
BshFI GGCC 5 cut(s) 5, 93, 186, 213, 252
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 4 cut(s) 135, 746, 782, 812
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 65, 87
BsmAI GTCTC 2 cut(s) 232, 399
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 5 cut(s) 5, 93, 186, 213, 252
Bsp143I GATC 1 cut(s) 871
BspACI CCGC 8 cut(s) 183, 243, 306, 309, 591, 749, 758, 761
BspANI GGCC 5 cut(s) 5, 93, 186, 213, 252
BspCNI CTCAG 2 cut(s) 574, 677
BspLI GGNNCC 4 cut(s) 92, 112, 253, 753
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 134
BspQI GCTCTTC 1 cut(s) 529
BspT107I GGYRCC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 745
BsrI ACTGG 3 cut(s) 92, 224, 655
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 4 cut(s) 277, 301, 382, 736
BssMI GATC 1 cut(s) 871
BssNI GRCGYC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 691
Bst2BI CACGAG 1 cut(s) 691
Bst2UI CCWGG 3 cut(s) 278, 383, 737
Bst4CI ACNGT 3 cut(s) 68, 377, 790
Bst6I CTCTTC 1 cut(s) 529
BstACI GRCGYC 1 cut(s) 438
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 211, 747
BstDEI CTNAG 4 cut(s) 547, 561, 664, 801
BstF5I GGATG 2 cut(s) 454, 499
BstHHI GCGC 2 cut(s) 131, 242
BstKTI GATC 1 cut(s) 874
BstMAI GTCTC 2 cut(s) 232, 399
BstMBI GATC 1 cut(s) 871
BstMWI GCNNNNNNNGC 3 cut(s) 660, 755, 758
BstNI CCWGG 3 cut(s) 278, 383, 737
BstSCI CCNGG 3 cut(s) 276, 381, 735
BstSFI CTRYAG 1 cut(s) 552
BstV1I GCAGC 3 cut(s) 192, 538, 566
BstV2I GAAGAC 2 cut(s) 3, 166
BsuRI GGCC 5 cut(s) 5, 93, 186, 213, 252
BtrI CACGTC 2 cut(s) 9, 425
BtsCI GGATG 2 cut(s) 454, 499
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 3 cut(s) 214, 569, 672
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 211, 747
CaiI CAGNNNCTG 1 cut(s) 277
CfoI GCGC 2 cut(s) 131, 242
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 3 cut(s) 46, 91, 251
CseI GACGC 2 cut(s) 353, 446
Csp6I GTAC 4 cut(s) 111, 148, 544, 603
CviAII CATG 1 cut(s) 651
CviQI GTAC 4 cut(s) 111, 148, 544, 603
DdeI CTNAG 4 cut(s) 547, 561, 664, 801
DpnI GATC 1 cut(s) 873
DpnII GATC 1 cut(s) 871
EaeI YGGCCR 2 cut(s) 3, 184
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
EciI GGCGGA 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 3 cut(s) 276, 381, 735
FaeI CATG 1 cut(s) 654
FaqI GGGAC 1 cut(s) 411
FatI CATG 1 cut(s) 650
FbaI TGATCA 1 cut(s) 871
Fnu4HI GCNGC 9 cut(s) 181, 184, 243, 307, 552, 555, 750, 759, 762
FokI GGATG 2 cut(s) 461, 506
Fsp4HI GCNGC 9 cut(s) 181, 184, 243, 307, 552, 555, 750, 759, 762
FspBI CTAG 1 cut(s) 206
GlaI GCGC 2 cut(s) 130, 241
GluI GCNGC 9 cut(s) 181, 184, 243, 307, 552, 555, 750, 759, 762
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 5 cut(s) 5, 93, 186, 213, 252
HapII CCGG 4 cut(s) 135, 746, 782, 812
HgaI GACGC 2 cut(s) 353, 446
HhaI GCGC 2 cut(s) 131, 242
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 1 cut(s) 654
Hin6I GCGC 2 cut(s) 129, 240
HinP1I GCGC 2 cut(s) 129, 240
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 2 cut(s) 282, 312
HpaII CCGG 4 cut(s) 135, 746, 782, 812
HphI GGTGA 1 cut(s) 826
Hpy166II GTNNAC 3 cut(s) 154, 414, 544
Hpy188I TCNGA 3 cut(s) 273, 317, 343
Hpy188III TCNNGA 1 cut(s) 575
Hpy8I GTNNAC 3 cut(s) 154, 414, 544
Hpy99I CGWCG 4 cut(s) 251, 440, 590, 832
HpyAV CCTTC 3 cut(s) 101, 172, 439
HpyCH4III ACNGT 3 cut(s) 68, 377, 790
HpyCH4IV ACGT 6 cut(s) 8, 150, 171, 424, 505, 710
HpyCH4V TGCA 4 cut(s) 219, 479, 503, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 660, 755, 758
HpyF3I CTNAG 4 cut(s) 547, 561, 664, 801
HpySE526I ACGT 6 cut(s) 8, 150, 171, 424, 505, 710
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 1 cut(s) 654
HspAI GCGC 2 cut(s) 129, 240
KpnI GGTACC 1 cut(s) 114
KroI GCCGGC 1 cut(s) 745
KroNI GCCGGC 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 871
Kzo9I GATC 1 cut(s) 871
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 2 cut(s) 562, 757
Lsp1109I GCAGC 3 cut(s) 192, 538, 566
LweI GCATC 1 cut(s) 568
MaeI CTAG 1 cut(s) 206
MaeII ACGT 6 cut(s) 8, 150, 171, 424, 505, 710
MaeIII GTNAC 2 cut(s) 259, 668
MalI GATC 1 cut(s) 873
MboI GATC 1 cut(s) 871
MboII GAAGA 5 cut(s) 3, 166, 324, 546, 739
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 361, 796
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 7 cut(s) 70, 176, 305, 311, 570, 657, 901
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 745
MroXI GAANNNNTTC 2 cut(s) 377, 731
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 183, 758
MspI CCGG 4 cut(s) 135, 746, 782, 812
MspR9I CCNGG 3 cut(s) 278, 383, 737
MvaI CCWGG 3 cut(s) 278, 383, 737
MwoI GCNNNNNNNGC 3 cut(s) 660, 755, 758
NaeI GCCGGC 1 cut(s) 747
NdeII GATC 1 cut(s) 871
NgoMIV GCCGGC 1 cut(s) 745
NlaIII CATG 1 cut(s) 654
NlaIV GGNNCC 4 cut(s) 92, 112, 253, 753
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PdiI GCCGGC 1 cut(s) 747
PdmI GAANNNNTTC 2 cut(s) 377, 731
PfeI GAWTC 1 cut(s) 312
PflFI GACNNNGTC 1 cut(s) 709
PflMI CCANNNNNTGG 1 cut(s) 87
PkrI GCNGC 9 cut(s) 182, 185, 244, 308, 553, 556, 751, 760, 763
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 1 cut(s) 151
Psp6I CCWGG 3 cut(s) 276, 381, 735
PspGI CCWGG 3 cut(s) 276, 381, 735
PspN4I GGNNCC 4 cut(s) 92, 112, 253, 753
PspPI GGNCC 3 cut(s) 46, 91, 251
PstI CTGCAG 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 277
PsyI GACNNNGTC 1 cut(s) 709
RsaI GTAC 4 cut(s) 112, 149, 545, 604
RsaNI GTAC 4 cut(s) 111, 148, 544, 603
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 529
SatI GCNGC 9 cut(s) 181, 184, 243, 307, 552, 555, 750, 759, 762
Sau3AI GATC 1 cut(s) 871
Sau96I GGNCC 3 cut(s) 46, 91, 251
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 3 cut(s) 278, 383, 737
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 552
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 2 cut(s) 361, 796
SsiI CCGC 8 cut(s) 183, 243, 306, 309, 591, 749, 758, 761
SspI AATATT 1 cut(s) 682
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 3 cut(s) 276, 381, 735
TaaI ACNGT 3 cut(s) 68, 377, 790
TaiI ACGT 6 cut(s) 11, 153, 174, 427, 508, 713
TaqI TCGA 3 cut(s) 462, 615, 830
TasI AATT 2 cut(s) 361, 796
TatI WGTACW 2 cut(s) 543, 602
TauI GCSGC 6 cut(s) 186, 245, 309, 752, 761, 764
TfiI GAWTC 1 cut(s) 312
TscAI CASTG 3 cut(s) 221, 569, 679
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 180, 551, 554
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 766
TspRI CASTG 3 cut(s) 221, 569, 679
Tth111I GACNNNGTC 1 cut(s) 709
Van91I CCANNNNNTGG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 796
XmnI GAANNNNTTC 2 cut(s) 377, 731
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.