Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Reverse (-)

61647006 .. 61647905

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG425500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCATTCAAGTCTATATTTTCAGTAGCATTATTGCTATCTTTAGTGACACTGCTTCTGGCTGTTGGGTCAAATGCAGGTGGAATTGCTATTTATTGGGGCCAAAATGGAAATGAAGGCACATTAGCACAAACATGTTCTTCAGGGAATTACCAATTTGTGAACATAGCTTTCCTTTCATCATTTGGTAATGGCCAGACCCCTACCATAAACCTTGCTGGTCACTGTGATCCATCCACCAACGAATGCACCAAGTTAAGCCCAGATATCAAGTCATGCCAAGCCGAAGGCATCAAGGTCATACTCTCCATAGGAGGAGGTGCTGGGAGCTATTCTCTAGCTTCATCCGATGATGCCCGACAAGTTGCTATGTACTTGTGGAACAACTTCTTGGGAGGACAGTCATCATCCAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTTGATATTGAAGGAGGAACTAATCAACATTGGGATGACCTCGCTAGGTACCTTTCTGGTTACAGCAAGAAGGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTAAACACAGGCCTCTTCGATTTTGTTTGGGTACAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGTGATGTTTCAAATCTCGAAGATGCTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCTCAAGCTGCTGGCAGTGGATTTATTCCTGCAGCTGATCTCAACTCACAAGTCCTCCCGGCTATCAAGAATTCGGCAAAATATGGAGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTAGATGGATACAGCTCTTCCATCAAGAATGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

299

Amino Acids

31.8

Weight (kDa)

4.83

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	29 - 247	4.5e-23	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	495
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	4 cut(s)	374, 497, 618, 647
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	10, 458, 666
AjnI	CCWGG	1 cut(s)	410
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	6 cut(s)	170, 330, 341, 749, 776, 876
AluI	AGCT	6 cut(s)	170, 330, 341, 749, 776, 876
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	4 cut(s)	100, 193, 413, 595
ApeKI	GCWGC	4 cut(s)	542, 737, 749, 773
ApoI	RAATTY	1 cut(s)	811
Asp700I	GAANNNNTTC	1 cut(s)	386
Asp718I	GGTACC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	100, 843
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	843
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	529, 724, 736, 785
BccI	CCATC	4 cut(s)	241, 431, 860, 890
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	863
BcnI	CCSGG	1 cut(s)	800
BfaI	CTAG	4 cut(s)	338, 492, 863, 898
BfmI	CTRYAG	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	863
BisI	GCNGC	4 cut(s)	543, 738, 750, 774
BlsI	GCNGC	4 cut(s)	544, 739, 751, 775
Bme1390I	CCNGG	2 cut(s)	412, 800
Bme18I	GGWCC	1 cut(s)	843
BmgT120I	GGNCC	2 cut(s)	100, 843
BmiI	GGNNCC	2 cut(s)	101, 497
BmrFI	CCNGG	2 cut(s)	412, 800
BmsI	GCATC	5 cut(s)	300, 343, 415, 556, 667
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpuEI	CTTGAG	1 cut(s)	729
BpuMI	CCSGG	1 cut(s)	800
BsaXI	ACNNNNNCTCC	6 cut(s)	414, 444, 529, 559, 780, 810
Bse1I	ACTGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	695
BseBI	CCWGG	1 cut(s)	412
BseGI	GGATG	5 cut(s)	233, 344, 407, 442, 487
BseMI	GCAATG	1 cut(s)	695
BseNI	ACTGG	1 cut(s)	643
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	4 cut(s)	529, 724, 736, 785
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	2 cut(s)	693, 723
BshFI	GGCC	4 cut(s)	102, 195, 415, 597
BshNI	GGYRCC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	800
BslFI	GGGAC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	540
BsmI	GAATGC	2 cut(s)	5, 251
BsnI	GGCC	4 cut(s)	102, 195, 415, 597
Bsp143I	GATC	3 cut(s)	229, 778, 859
BspANI	GGCC	4 cut(s)	102, 195, 415, 597
BspLI	GGNNCC	2 cut(s)	101, 497
BspMAI	CTGCAG	1 cut(s)	775
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	695
BsrI	ACTGG	1 cut(s)	643
BssMI	GATC	3 cut(s)	229, 778, 859
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	3 cut(s)	227, 402, 552
Bst6I	CTCTTC	2 cut(s)	605, 883
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	1 cut(s)	724
BstF5I	GGATG	5 cut(s)	233, 344, 407, 442, 487
BstKTI	GATC	3 cut(s)	232, 781, 862
BstMBI	GATC	3 cut(s)	229, 778, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	519, 707, 746
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	410, 798
BstSFI	CTRYAG	1 cut(s)	771
BstV1I	GCAGC	4 cut(s)	529, 724, 736, 785
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	4 cut(s)	102, 195, 415, 597
BtsCI	GGATG	5 cut(s)	233, 344, 407, 442, 487
BtsI	GCAGTG	2 cut(s)	50, 763
BtsIMutI	CAGTG	4 cut(s)	50, 223, 557, 763
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	754
Cfr13I	GGNCC	2 cut(s)	100, 843
Csp6I	GTAC	4 cut(s)	373, 496, 617, 646
CviAII	CATG	3 cut(s)	135, 276, 835
CviQI	GTAC	4 cut(s)	373, 496, 617, 646
DdeI	CTNAG	1 cut(s)	724
DpnI	GATC	3 cut(s)	231, 780, 861
DpnII	GATC	3 cut(s)	229, 778, 859
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	605, 883
EarI	CTCTTC	2 cut(s)	605, 883
Eco147I	AGGCCT	1 cut(s)	597
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	843
Eco57I	CTGAAG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	410
EcoRV	GATATC	1 cut(s)	268
FaeI	CATG	3 cut(s)	138, 279, 838
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	3 cut(s)	134, 275, 834
Fnu4HI	GCNGC	4 cut(s)	543, 738, 750, 774
FokI	GGATG	5 cut(s)	220, 331, 394, 449, 494
Fsp4HI	GCNGC	4 cut(s)	543, 738, 750, 774
FspBI	CTAG	4 cut(s)	338, 492, 863, 898
GluI	GCNGC	4 cut(s)	543, 738, 750, 774
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	4 cut(s)	102, 195, 415, 597
HapII	CCGG	1 cut(s)	800
Hin1II	CATG	3 cut(s)	138, 279, 838
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	800
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	4 cut(s)	163, 445, 532, 648
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	5 cut(s)	563, 671, 808, 863, 886
Hpy8I	GTNNAC	4 cut(s)	163, 445, 532, 648
HpyAV	CCTTC	4 cut(s)	110, 281, 452, 511
HpyCH4III	ACNGT	3 cut(s)	227, 402, 552
HpyCH4V	TGCA	6 cut(s)	77, 249, 584, 710, 740, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	519, 707, 746
HpyF3I	CTNAG	1 cut(s)	724
Hsp92II	CATG	3 cut(s)	138, 279, 838
KpnI	GGTACC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	229, 778, 859
LguI	GCTCTTC	1 cut(s)	883
LmnI	GCTCC	2 cut(s)	327, 550
Lsp1109I	GCAGC	4 cut(s)	529, 724, 736, 785
LweI	GCATC	5 cut(s)	300, 343, 415, 556, 667
MaeI	CTAG	4 cut(s)	338, 492, 863, 898
MaeIII	GTNAC	3 cut(s)	46, 221, 506
MalI	GATC	3 cut(s)	231, 780, 861
MboI	GATC	3 cut(s)	229, 778, 859
MboII	GAAGA	4 cut(s)	132, 592, 686, 870
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	5 cut(s)	84, 148, 155, 620, 811
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	556
Mox20I	TGGCCA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	2 cut(s)	133, 480
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	2 cut(s)	412, 800
Mva1269I	GAATGC	2 cut(s)	5, 251
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	3 cut(s)	519, 707, 746
NciI	CCSGG	1 cut(s)	800
NdeII	GATC	3 cut(s)	229, 778, 859
NlaIII	CATG	3 cut(s)	138, 279, 838
NlaIV	GGNNCC	2 cut(s)	101, 497
NmuCI	GTSAC	2 cut(s)	46, 221
NspI	RCATGY	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	597
PciI	ACATGT	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	883
PctI	GAATGC	2 cut(s)	5, 251
PdmI	GAANNNNTTC	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	544, 739, 751, 775
PscI	ACATGT	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	101, 497
PspPI	GGNCC	2 cut(s)	100, 843
PstI	CTGCAG	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	4 cut(s)	374, 497, 618, 647
RsaNI	GTAC	4 cut(s)	373, 496, 617, 646
RseI	CAYNNNNRTG	2 cut(s)	133, 480
SapI	GCTCTTC	1 cut(s)	883
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	4 cut(s)	543, 738, 750, 774
Sau3AI	GATC	3 cut(s)	229, 778, 859
Sau96I	GGNCC	2 cut(s)	100, 843
ScrFI	CCNGG	2 cut(s)	412, 800
SfaNI	GCATC	5 cut(s)	300, 343, 415, 556, 667
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	843
SmiMI	CAYNNNNRTG	2 cut(s)	133, 480
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
Sse9I	AATT	5 cut(s)	84, 148, 155, 620, 811
SseBI	AGGCCT	1 cut(s)	597
SspMI	CTAG	4 cut(s)	338, 492, 863, 898
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	2 cut(s)	410, 798
TaaI	ACNGT	3 cut(s)	227, 402, 552
TaqI	TCGA	2 cut(s)	603, 672
TasI	AATT	5 cut(s)	84, 148, 155, 620, 811
TatI	WGTACW	2 cut(s)	372, 645
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	4 cut(s)	57, 230, 557, 763
TseFI	GTSAC	2 cut(s)	46, 221
TseI	GCWGC	4 cut(s)	542, 737, 749, 773
Tsp45I	GTSAC	2 cut(s)	46, 221
TspDTI	ATGAA	3 cut(s)	129, 168, 333
TspRI	CASTG	4 cut(s)	57, 230, 557, 763
VpaK11BI	GGWCC	1 cut(s)	843
XapI	RAATTY	1 cut(s)	811
XbaI	TCTAGA	1 cut(s)	862
XceI	RCATGY	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	4 cut(s)	338, 492, 863, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.