Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Forward (+)

28977273 .. 28978526

Gene Structure 1254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGGACAGAAGATTTGAAGCCCATACTCTCCATAGGAGGAGGTGCTGGGCGCTACTCTCTAGCTTCATCTGATGATGCCCGACAAGTTGCTATGTACTTGTGGAACAACTTCTTGGGAGGACAGTCGTCATCCAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTTGATATTGAGGGAGGAACTGATCAACATTGGGATGACCTCGCTAGGTACCTTTCTGGTTACAGCAAGACGGGCGTCTTCGAATTTGTTTGGGTACAATTCTACAACCACCCTCCTTGCCAGTACACTTCTAATGATGTTTCAAATCTCGAAGATGCTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCTCGAGCTGCTGGCAGTGGATTTATTCCTGCAGCTGATCTCAACTCACAAGTCCTTCCGGCTATAAAAAATTCGGCGAAATATGGAGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTAGATGGATACAGCTCTTCCATCAAGAATGACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

182

Amino Acids

19.83

Weight (kDa)

4.64

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	4 - 76	9.5e-06	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	546
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	254, 460
AcyI	GRCGYC	2 cut(s)	246, 543
AfaI	GTAC	4 cut(s)	98, 221, 267, 296
AgsI	TTSAA	2 cut(s)	19, 315
AjnI	CCWGG	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	4 cut(s)	65, 398, 425, 525
AluI	AGCT	4 cut(s)	65, 398, 425, 525
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	386, 398, 422
ApoI	RAATTY	2 cut(s)	254, 460
ArsI	GACNNNNNNTTYG	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	110
Asp718I	GGTACC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	492
AsuII	TTCGAA	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	492
BanI	GGYRCC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	373, 385, 434
BccI	CCATC	3 cut(s)	155, 509, 539
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	136
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	193
BfaI	CTAG	4 cut(s)	62, 216, 512, 547
BfmI	CTRYAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	512
BisI	GCNGC	3 cut(s)	387, 399, 423
BlsI	GCNGC	3 cut(s)	388, 400, 424
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	3 cut(s)	67, 139, 316
BoxI	GACNNNNGTC	2 cut(s)	127, 245
BpiI	GAAGAC	1 cut(s)	241
Bpu14I	TTCGAA	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	246, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	131, 166, 211
BseMI	GCAATG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	373, 385, 434
BseYI	CCCAGC	1 cut(s)	47
BsgI	GTGCAG	2 cut(s)	342, 372
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	393
Bsp119I	TTCGAA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	193, 427, 508
BspANI	GGCC	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	424
BspQI	GCTCTTC	1 cut(s)	532
BspT104I	TTCGAA	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	3 cut(s)	193, 427, 508
BssNI	GRCGYC	2 cut(s)	246, 543
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	532
BstACI	GRCGYC	2 cut(s)	246, 543
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	373
BstF5I	GGATG	3 cut(s)	131, 166, 211
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	196, 430, 511
BstMBI	GATC	3 cut(s)	193, 427, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 356, 395
BstNI	CCWGG	1 cut(s)	136
BstPAI	GACNNNNGTC	2 cut(s)	127, 245
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	3 cut(s)	373, 385, 434
BstV2I	GAAGAC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	131, 166, 211
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	492
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	4 cut(s)	97, 220, 266, 295
CspCI	CAANNNNNGTGG	2 cut(s)	269, 304
CviAII	CATG	1 cut(s)	484
CviJI	RGCY	7 cut(s)	22, 65, 139, 398, 425, 452, 525
CviKI_1	RGCY	7 cut(s)	22, 65, 139, 398, 425, 452, 525
CviQI	GTAC	4 cut(s)	97, 220, 266, 295
DdeI	CTNAG	1 cut(s)	373
DpnI	GATC	3 cut(s)	195, 429, 510
DpnII	GATC	3 cut(s)	193, 427, 508
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	134
FaeI	CATG	1 cut(s)	487
FaiI	YATR	8 cut(s)	26, 35, 95, 363, 455, 474, 485, 504
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	483
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	387, 399, 423
FokI	GGATG	3 cut(s)	118, 173, 218
Fsp4HI	GCNGC	3 cut(s)	387, 399, 423
FspBI	CTAG	4 cut(s)	62, 216, 512, 547
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	387, 399, 423
GsaI	CCCAGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	449
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	2 cut(s)	246, 543
Hin1II	CATG	1 cut(s)	487
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	169, 297
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	3 cut(s)	320, 512, 535
Hpy8I	GTNNAC	2 cut(s)	169, 297
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	3 cut(s)	359, 389, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 356, 395
HpyF3I	CTNAG	1 cut(s)	373
HpySE526I	ACGT	1 cut(s)	543
Hsp92I	GRCGYC	2 cut(s)	246, 543
Hsp92II	CATG	1 cut(s)	487
HspAI	GCGC	1 cut(s)	52
KpnI	GGTACC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	193, 427, 508
LguI	GCTCTTC	1 cut(s)	532
Lsp1109I	GCAGC	3 cut(s)	373, 385, 434
LweI	GCATC	3 cut(s)	67, 139, 316
MaeI	CTAG	4 cut(s)	62, 216, 512, 547
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	3 cut(s)	195, 429, 510
MboI	GATC	3 cut(s)	193, 427, 508
MboII	GAAGA	4 cut(s)	23, 241, 335, 519
MluCI	AATT	3 cut(s)	254, 269, 460
MnlI	CCTC	9 cut(s)	32, 35, 113, 175, 179, 221, 294, 402, 470
MroXI	GAANNNNTTC	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	3 cut(s)	243, 356, 395
NdeII	GATC	3 cut(s)	193, 427, 508
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	1 cut(s)	221
NspV	TTCGAA	1 cut(s)	252
PaeR7I	CTCGAG	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	388, 400, 424
PshAI	GACNNNNGTC	2 cut(s)	127, 245
Psp6I	CCWGG	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	492
PspXI	VCTCGAGB	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	424
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	4 cut(s)	98, 221, 267, 296
RsaNI	GTAC	4 cut(s)	97, 220, 266, 295
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	532
SatI	GCNGC	3 cut(s)	387, 399, 423
Sau3AI	GATC	3 cut(s)	193, 427, 508
Sau96I	GGNCC	1 cut(s)	492
ScrFI	CCNGG	1 cut(s)	136
SfaNI	GCATC	3 cut(s)	67, 139, 316
SfcI	CTRYAG	1 cut(s)	420
Sfr274I	CTCGAG	1 cut(s)	393
SfuI	TTCGAA	1 cut(s)	252
SinI	GGWCC	1 cut(s)	492
SlaI	CTCGAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	3 cut(s)	254, 269, 460
SspMI	CTAG	4 cut(s)	62, 216, 512, 547
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	3 cut(s)	252, 321, 394
TasI	AATT	3 cut(s)	254, 269, 460
TatI	WGTACW	2 cut(s)	96, 294
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	3 cut(s)	386, 398, 422
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	2 cut(s)	254, 460
XbaI	TCTAGA	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	4 cut(s)	62, 216, 512, 547
ZraI	GACGTC	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.