Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Forward (+)

19916330 .. 19917223

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTTCAAAATCCACAATGTCCCTAGCATTGCTCTCTTTAGTGACACTAGTGCTGACTCTCGGTGCTAAAGCCGGTGGAATCGCAATATATTGGGGTCAGAATGGTAACGAAGGCACATTGGCTGAAACATGTGCAAGTTGCAACTTGTGGAACTTCTTGGGAGGGCATTCCTCGTCGAGGCCGTTGGGAGCTGCAGTATTGGATGGAATTTACTTTGATATTGAAGGAGGGACTGACCAACATTGGGATGACCTTGCTAAGTACCTATCTGGATATAGCAAGAGAGGCAAGAAAGTTTACTTGACTGCTGCCCCACAATGTCCCTTTCCTGATGCTTGGGTTGGAAATGCACTTAAGACCGGCCTCTTTGACAATGTTTGGGTTCAGTTCTACAACAACCCTCCCTGTCAGTACACTTCCGGCAATGTGGCTAATCTCGAAAGTGCTTGGAAGCAGTGGACGTCAGCCATCCCTGCACATAAGATTTTCTTGGGGTTGCCTGCTGCACCTCAGGCTGCTGGTAGCGGTTTTATTCCTGCTTCTGATCTCAACTCACAAGTCCTTCCGCATATTAAAAATTCGGCTAAGTATCGAGGTGTCATGCTTTGGTCCAAGTATTATGCTGATCTTGATCTTGATGGATACAGCTCCTCCATCAAGAATCACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

225

Amino Acids

24.13

Weight (kDa)

7.66

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	50 - 170	2.5e-07	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	467
AciI	CCGC	2 cut(s)	528, 569
AcsI	RAATTY	2 cut(s)	210, 580
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	2 cut(s)	266, 416
AfiI	CCNNNNNNNGG	2 cut(s)	180, 247
AflII	CTTAAG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	9, 227
AhlI	ACTAGT	1 cut(s)	49
AjiI	CACGTC	1 cut(s)	670
AluBI	AGCT	2 cut(s)	194, 651
AluI	AGCT	2 cut(s)	194, 651
AoxI	GGCC	2 cut(s)	182, 364
ApeKI	GCWGC	4 cut(s)	194, 311, 506, 518
ApoI	RAATTY	2 cut(s)	210, 580
AspS9I	GGNCC	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	612
AxyI	CCTNAGG	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	181, 298, 493, 505
BccI	CCATC	4 cut(s)	200, 479, 635, 665
BceAI	ACGGC	1 cut(s)	169
BciVI	GTATCC	1 cut(s)	638
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	3 cut(s)	26, 50, 673
BfmI	CTRYAG	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	638
BisI	GCNGC	4 cut(s)	195, 312, 507, 519
BlsI	GCNGC	4 cut(s)	196, 313, 508, 520
Bme18I	GGWCC	1 cut(s)	612
BmgBI	CACGTC	1 cut(s)	670
BmgT120I	GGNCC	1 cut(s)	612
BmsI	GCATC	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	633
BsaHI	GRCGYC	1 cut(s)	464
BsaXI	ACNNNNNCTCC	4 cut(s)	183, 213, 638, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 247
Bse118I	RCCGGY	2 cut(s)	74, 362
Bse21I	CCTNAGG	1 cut(s)	513
Bse3DI	GCAATG	2 cut(s)	29, 433
Bse8I	GATNNNNATC	1 cut(s)	633
BseGI	GGATG	3 cut(s)	211, 256, 471
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	180, 247
BseMI	GCAATG	2 cut(s)	29, 433
BseMII	CTCAG	1 cut(s)	527
BseRI	GAGGAG	1 cut(s)	643
BseXI	GCAGC	4 cut(s)	181, 298, 493, 505
BsgI	GTGCAG	2 cut(s)	462, 492
BshFI	GGCC	2 cut(s)	184, 366
BsiSI	CCGG	3 cut(s)	75, 363, 423
BslFI	GGGAC	3 cut(s)	7, 247, 309
BslI	CCNNNNNNNGG	2 cut(s)	180, 247
BsmFI	GGGAC	3 cut(s)	7, 247, 309
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	184, 366
Bsp143I	GATC	3 cut(s)	547, 628, 634
BspACI	CCGC	2 cut(s)	528, 569
BspANI	GGCC	2 cut(s)	184, 366
BspCNI	CTCAG	1 cut(s)	526
BspMAI	CTGCAG	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	29, 433
BsrFI	RCCGGY	2 cut(s)	74, 362
BssAI	RCCGGY	2 cut(s)	74, 362
BssMI	GATC	3 cut(s)	547, 628, 634
BssNI	GRCGYC	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	464
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	3 cut(s)	261, 513, 588
BstENI	CCTNNNNNAGG	1 cut(s)	178
BstF5I	GGATG	3 cut(s)	211, 256, 471
BstKTI	GATC	3 cut(s)	550, 631, 637
BstMBI	GATC	3 cut(s)	547, 628, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	288, 476, 515
BstNSI	RCATGY	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	4 cut(s)	181, 298, 493, 505
Bsu36I	CCTNAGG	1 cut(s)	513
BsuI	GTATCC	1 cut(s)	638
BsuRI	GGCC	2 cut(s)	184, 366
BtrI	CACGTC	1 cut(s)	670
BtsCI	GGATG	3 cut(s)	211, 256, 471
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	504
Cfr10I	RCCGGY	2 cut(s)	74, 362
Cfr13I	GGNCC	1 cut(s)	612
Csp6I	GTAC	2 cut(s)	265, 415
CviAII	CATG	2 cut(s)	132, 604
CviQI	GTAC	2 cut(s)	265, 415
DdeI	CTNAG	3 cut(s)	261, 513, 588
DpnI	GATC	3 cut(s)	549, 630, 636
DpnII	GATC	3 cut(s)	547, 628, 634
Eco47I	GGWCC	1 cut(s)	612
Eco81I	CCTNAGG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	178
FaeI	CATG	2 cut(s)	135, 607
FaiI	YATR	7 cut(s)	91, 133, 279, 483, 573, 605, 624
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	3 cut(s)	7, 247, 309
FatI	CATG	2 cut(s)	131, 603
Fnu4HI	GCNGC	4 cut(s)	195, 312, 507, 519
FokI	GGATG	3 cut(s)	218, 263, 458
Fsp4HI	GCNGC	4 cut(s)	195, 312, 507, 519
FspBI	CTAG	3 cut(s)	26, 50, 673
GluI	GCNGC	4 cut(s)	195, 312, 507, 519
HaeIII	GGCC	2 cut(s)	184, 366
HapII	CCGG	3 cut(s)	75, 363, 423
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	2 cut(s)	135, 607
HinfI	GANTC	3 cut(s)	58, 81, 664
HpaII	CCGG	3 cut(s)	75, 363, 423
Hpy166II	GTNNAC	3 cut(s)	301, 417, 462
Hpy188I	TCNGA	2 cut(s)	102, 547
Hpy188III	TCNNGA	6 cut(s)	273, 332, 440, 632, 638, 661
Hpy8I	GTNNAC	3 cut(s)	301, 417, 462
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	107, 221, 575
HpyCH4IV	ACGT	2 cut(s)	464, 669
HpyCH4V	TGCA	6 cut(s)	137, 144, 197, 353, 479, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	288, 476, 515
HpyF3I	CTNAG	3 cut(s)	261, 513, 588
HpySE526I	ACGT	2 cut(s)	464, 669
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	2 cut(s)	135, 607
Kzo9I	GATC	3 cut(s)	547, 628, 634
LmnI	GCTCC	2 cut(s)	191, 656
Lsp1109I	GCAGC	4 cut(s)	181, 298, 493, 505
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	3 cut(s)	26, 50, 673
MaeII	ACGT	2 cut(s)	464, 669
MaeIII	GTNAC	2 cut(s)	43, 107
MalI	GATC	3 cut(s)	549, 630, 636
MboI	GATC	3 cut(s)	547, 628, 634
MluCI	AATT	2 cut(s)	210, 580
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	325
MseI	TTAA	2 cut(s)	357, 576
MslI	CAYNNNNRTG	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	3 cut(s)	75, 363, 423
Mva1269I	GAATGC	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	288, 476, 515
NdeII	GATC	3 cut(s)	547, 628, 634
NlaIII	CATG	2 cut(s)	135, 607
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	135
PciI	ACATGT	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	81, 664
PkrI	GCNGC	4 cut(s)	196, 313, 508, 520
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PscI	ACATGT	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	612
PstI	CTGCAG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	266, 416
RsaNI	GTAC	2 cut(s)	265, 415
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	357, 576
SatI	GCNGC	4 cut(s)	195, 312, 507, 519
Sau3AI	GATC	3 cut(s)	547, 628, 634
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	1 cut(s)	52
SetI	ASST	8 cut(s)	196, 258, 270, 467, 514, 601, 653, 672
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	2 cut(s)	210, 580
SsiI	CCGC	2 cut(s)	528, 569
SspMI	CTAG	3 cut(s)	26, 50, 673
TaiI	ACGT	2 cut(s)	467, 672
TaqI	TCGA	3 cut(s)	179, 441, 595
TasI	AATT	2 cut(s)	210, 580
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	81, 664
Tru1I	TTAA	2 cut(s)	357, 576
Tru9I	TTAA	2 cut(s)	357, 576
TscAI	CASTG	1 cut(s)	464
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	194, 311, 506, 518
Tsp45I	GTSAC	1 cut(s)	43
TspRI	CASTG	1 cut(s)	464
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	612
XagI	CCTNNNNNAGG	1 cut(s)	178
XapI	RAATTY	2 cut(s)	210, 580
XceI	RCATGY	1 cut(s)	135
XspI	CTAG	3 cut(s)	26, 50, 673
ZraI	GACGTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.