RchiOBHm_Chr4g0400341

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000601
Physical Location & Seq
Reverse (-)
17889919 .. 17890683
765 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37239

Sequence Viewer

Length: 660 bp
ATGTGCTTTAGGAACTACAAATTCGTAAACATAGCTTTCCTCTCATCATTTGGTAATGGCCAAACCCTTACCATAAACCTCGCCGGTCACTGTGACCCATCCACCAACGAATGCACCAAGTTGAGCCCCGAGATCAAGTCATCTGCAGGAAGCTACTCTTTGGCTTCATCCGACGATGCCTGCCAAGTTGCTACTTACTTGTGGAACAACTTCTTGGGAGGACAGTCCTCATCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTACACTTTGACATTGAAGGAGGGACTGATCAATATTGGGATGACCTCTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTCAAGACAGGCCTCTTCAACTTTGTTTGGGTACAATTCTACAACAACCCTCCTTACCAGTACACTTCTGGTGATATTTCAAATCTCGAAGATGGTTGGAAGCAATCGACTTCCGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCCCAAGCTGCTAGTAGTGGATTTATTCCAGCAGCTGATCTCAACTCACAAGTTCTTCCGGCTATCAAAAATTCAGCTAAATATGGAGGTGTCGTGCTTTGGTCTAGGTATTATGATGATCTAGATGGATACAGCTCTTCCATCAAGAATGATGTCTAG

Protein Analysis

219

Amino Acids

23.75

Weight (kDa)

4.53

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 459
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 20, 571
AfaI GTAC 3 cut(s) 267, 378, 407
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 3 cut(s) 281, 364, 426
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 6 cut(s) 35, 153, 509, 536, 578, 636
AluI AGCT 6 cut(s) 35, 153, 509, 536, 578, 636
AlwNI CAGNNNCTG 1 cut(s) 536
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 3 cut(s) 58, 236, 355
ApeKI GCWGC 3 cut(s) 497, 509, 533
ApoI RAATTY 2 cut(s) 20, 571
Asp700I GAANNNNTTC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 128
BalI TGGCCA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 128
BbvI GCAGC 3 cut(s) 484, 496, 545
BccI CCATC 5 cut(s) 106, 254, 431, 620, 650
BceAI ACGGC 1 cut(s) 223
BciVI GTATCC 1 cut(s) 623
BclI TGATCA 1 cut(s) 292
BfaI CTAG 4 cut(s) 513, 606, 623, 658
BfmI CTRYAG 1 cut(s) 144
BfuI GTATCC 1 cut(s) 623
BisI GCNGC 3 cut(s) 498, 510, 534
BlsI GCNGC 3 cut(s) 499, 511, 535
BmeT110I CYCGRG 1 cut(s) 128
BmsI GCATC 3 cut(s) 166, 238, 316
BoxI GACNNNNGTC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 332
BsaXI ACNNNNNCTCC 4 cut(s) 237, 267, 579, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 403
BseGI GGATG 4 cut(s) 98, 167, 265, 310
BseLI CCNNNNNNNGG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 403
BseXI GCAGC 3 cut(s) 484, 496, 545
BsgI GTGCAG 2 cut(s) 453, 483
BshFI GGCC 3 cut(s) 60, 238, 357
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 84, 560
BslFI GGGAC 2 cut(s) 300, 301
BslI CCNNNNNNNGG 1 cut(s) 234
BsmFI GGGAC 2 cut(s) 300, 301
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 3 cut(s) 60, 238, 357
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 4 cut(s) 132, 292, 538, 619
BspACI CCGC 1 cut(s) 459
BspANI GGCC 3 cut(s) 60, 238, 357
BspMAI CTGCAG 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 643
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 83
BssMI GATC 4 cut(s) 132, 292, 538, 619
Bst4CI ACNGT 2 cut(s) 92, 225
Bst6I CTCTTC 2 cut(s) 365, 643
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 484
BstENI CCTNNNNNAGG 1 cut(s) 232
BstF5I GGATG 4 cut(s) 98, 167, 265, 310
BstKTI GATC 4 cut(s) 135, 295, 541, 622
BstMBI GATC 4 cut(s) 132, 292, 538, 619
BstMWI GCNNNNNNNGC 2 cut(s) 467, 506
BstPAI GACNNNNGTC 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 484, 496, 545
BsuI GTATCC 1 cut(s) 623
BsuRI GGCC 3 cut(s) 60, 238, 357
BtsCI GGATG 4 cut(s) 98, 167, 265, 310
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 83
Csp6I GTAC 3 cut(s) 266, 377, 406
CviQI GTAC 3 cut(s) 266, 377, 406
DdeI CTNAG 1 cut(s) 484
DpnI GATC 4 cut(s) 134, 294, 540, 621
DpnII GATC 4 cut(s) 132, 292, 538, 619
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 365, 643
EarI CTCTTC 2 cut(s) 365, 643
EciI GGCGGA 1 cut(s) 448
Eco147I AGGCCT 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 128
EcoNI CCTNNNNNAGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 128
FaiI YATR 6 cut(s) 32, 74, 333, 474, 585, 615
FalI AAGNNNNNCTT 4 cut(s) 142, 174, 467, 499
FaqI GGGAC 2 cut(s) 300, 301
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 498, 510, 534
FokI GGATG 4 cut(s) 85, 154, 272, 317
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 3 cut(s) 498, 510, 534
FspBI CTAG 4 cut(s) 513, 606, 623, 658
GluI GCNGC 3 cut(s) 498, 510, 534
HaeIII GGCC 3 cut(s) 60, 238, 357
HapII CCGG 2 cut(s) 84, 560
HpaII CCGG 2 cut(s) 84, 560
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 3 cut(s) 28, 268, 408
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 5 cut(s) 323, 349, 431, 623, 646
Hpy8I GTNNAC 3 cut(s) 28, 268, 408
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 2 cut(s) 92, 225
HpyCH4V TGCA 5 cut(s) 114, 146, 344, 470, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 506
HpyF3I CTNAG 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 4 cut(s) 132, 292, 538, 619
LguI GCTCTTC 1 cut(s) 643
Lsp1109I GCAGC 3 cut(s) 484, 496, 545
LweI GCATC 3 cut(s) 166, 238, 316
MaeI CTAG 4 cut(s) 513, 606, 623, 658
MaeIII GTNAC 2 cut(s) 86, 92
MalI GATC 4 cut(s) 134, 294, 540, 621
MboI GATC 4 cut(s) 132, 292, 538, 619
MboII GAAGA 4 cut(s) 352, 446, 548, 630
MhlI GDGCHC 1 cut(s) 128
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 3 cut(s) 20, 380, 571
MluNI TGGCCA 1 cut(s) 60
MmeI TCCRAC 3 cut(s) 195, 316, 422
MnlI CCTC 9 cut(s) 50, 89, 212, 238, 278, 320, 368, 405, 581
Mox20I TGGCCA 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 209
MscI TGGCCA 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 2 cut(s) 84, 560
Mva1269I GAATGC 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 467, 506
NdeII GATC 4 cut(s) 132, 292, 538, 619
NmuCI GTSAC 2 cut(s) 86, 92
PceI AGGCCT 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 643
PctI GAATGC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 209
PkrI GCNGC 3 cut(s) 499, 511, 535
PshAI GACNNNNGTC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 3 cut(s) 267, 378, 407
RsaNI GTAC 3 cut(s) 266, 377, 406
SapI GCTCTTC 1 cut(s) 643
SatI GCNGC 3 cut(s) 498, 510, 534
Sau3AI GATC 4 cut(s) 132, 292, 538, 619
SduI GDGCHC 1 cut(s) 128
SfaNI GCATC 3 cut(s) 166, 238, 316
SfcI CTRYAG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 3 cut(s) 20, 380, 571
SseBI AGGCCT 1 cut(s) 357
SsiI CCGC 1 cut(s) 459
SspI AATATT 1 cut(s) 299
SspMI CTAG 4 cut(s) 513, 606, 623, 658
StuI AGGCCT 1 cut(s) 357
TaaI ACNGT 2 cut(s) 92, 225
TaqI TCGA 2 cut(s) 432, 452
TasI AATT 3 cut(s) 20, 380, 571
TatI WGTACW 2 cut(s) 265, 405
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 2 cut(s) 86, 92
TseI GCWGC 3 cut(s) 497, 509, 533
Tsp45I GTSAC 2 cut(s) 86, 92
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 232
XapI RAATTY 2 cut(s) 20, 571
XbaI TCTAGA 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 4 cut(s) 513, 606, 623, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.