Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Forward (+)

67610720 .. 67611969

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG504200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATTCATTATCGTGGCCAAACCCCTACCATAAACCTCGCCGGTCACCGTGACCCGTCCACCAATGAATGCACCAAGTTGAGCCCCGAGATCAAGTCATGCCAGGCCAAAGGCATTAAGGTCATACTCTCCATAGGAGGAGCTGCAGGGAGCTACTCTTTGGCTTCATCCGACGATGCCCGCCAAGTTGCTACTTACTTGTGGAACAACTTCTTGGGAGGACAGTCCTCTTCAAGGCCATTGGGAGATGCTGTTTTGGATGGAGTTGACTTTGACATTGAAGGAGGGTCTGATCAATATTGGGATGACCTCGCGAGGTACCTTTCCCGGTACAGTAAGAAGGGCAAGAAAGTATACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATACACTCAACACAGGCCTCTTCGACTTTGTTTGGGTACAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGCGATATTTCAAATCTCGAAGATGGTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAAGATTTTCTTAGGACTTCTTGCTGCACCTCAAGCTGCTGGTAGTGGATTTATTCCTACGGCTGATCTCAACTCACAAGTCCTTCCGGCTATCAAAAATTCAGCCAAATATGGAGGTGTCATGCTTTGGTCGAAGTATTATGATGATCTCGATGGATACAGCTCCTCCATCAAGAATGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

240

Amino Acids

26.1

Weight (kDa)

5.56

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	30 - 185	1.6e-17	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	1 cut(s)	314
AciI	CCGC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	634
AfaI	GTAC	4 cut(s)	320, 332, 441, 470
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	234, 281, 489
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	4 cut(s)	143, 153, 572, 699
AluI	AGCT	4 cut(s)	143, 153, 572, 699
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	4 cut(s)	16, 105, 236, 418
ApeKI	GCWGC	4 cut(s)	143, 365, 560, 572
ApoI	RAATTY	1 cut(s)	634
Asp700I	GAANNNNTTC	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	318
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	86
BbvI	GCAGC	4 cut(s)	130, 352, 547, 559
BccI	CCATC	4 cut(s)	254, 494, 683, 713
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	686
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	328
BfaI	CTAG	1 cut(s)	721
BfmI	CTRYAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	686
BisI	GCNGC	4 cut(s)	144, 366, 561, 573
BlsI	GCNGC	4 cut(s)	145, 367, 562, 574
Bme1390I	CCNGG	2 cut(s)	104, 328
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	2 cut(s)	104, 328
BmsI	GCATC	3 cut(s)	166, 238, 379
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	328
BsaXI	ACNNNNNCTCC	6 cut(s)	237, 267, 352, 382, 686, 716
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	3 cut(s)	167, 265, 310
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	2 cut(s)	153, 691
BseXI	GCAGC	4 cut(s)	130, 352, 547, 559
BsgI	GTGCAG	2 cut(s)	516, 546
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	4 cut(s)	18, 107, 238, 420
BshNI	GGYRCC	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	42, 328, 623
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	4 cut(s)	18, 107, 238, 420
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	90, 292, 601, 682
Bsp68I	TCGCGA	1 cut(s)	314
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	4 cut(s)	18, 107, 238, 420
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	518
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	41
BssMI	GATC	4 cut(s)	90, 292, 601, 682
BssNAI	GTATAC	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	4 cut(s)	50, 225, 335, 375
Bst6I	CTCTTC	2 cut(s)	235, 428
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	547
BstEII	GGTNACC	1 cut(s)	44
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	167, 265, 310
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	4 cut(s)	93, 295, 604, 685
BstMBI	GATC	4 cut(s)	90, 292, 601, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 569
BstNI	CCWGG	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	44
BstSCI	CCNGG	2 cut(s)	102, 326
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	4 cut(s)	130, 352, 547, 559
BstZ17I	GTATAC	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	4 cut(s)	18, 107, 238, 420
BtsCI	GGATG	3 cut(s)	167, 265, 310
BtsIMutI	CAGTG	1 cut(s)	380
BtuMI	TCGCGA	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	41
Csp6I	GTAC	4 cut(s)	319, 331, 440, 469
CviAII	CATG	2 cut(s)	99, 658
CviQI	GTAC	4 cut(s)	319, 331, 440, 469
DdeI	CTNAG	1 cut(s)	547
DpnI	GATC	4 cut(s)	92, 294, 603, 684
DpnII	GATC	4 cut(s)	90, 292, 601, 682
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	235, 428
EarI	CTCTTC	2 cut(s)	235, 428
Eco147I	AGGCCT	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	2 cut(s)	102, 661
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	2 cut(s)	98, 657
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	144, 366, 561, 573
FokI	GGATG	3 cut(s)	154, 272, 317
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	4 cut(s)	144, 366, 561, 573
FspBI	CTAG	1 cut(s)	721
GluI	GCNGC	4 cut(s)	144, 366, 561, 573
HaeIII	GGCC	4 cut(s)	18, 107, 238, 420
HapII	CCGG	3 cut(s)	42, 328, 623
Hin1II	CATG	2 cut(s)	102, 661
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	42, 328, 623
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	4 cut(s)	60, 268, 355, 471
Hpy188I	TCNGA	2 cut(s)	172, 292
Hpy188III	TCNNGA	5 cut(s)	313, 386, 494, 686, 709
Hpy8I	GTNNAC	4 cut(s)	60, 268, 355, 471
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	275, 334, 629
HpyCH4III	ACNGT	4 cut(s)	50, 225, 335, 375
HpyCH4V	TGCA	4 cut(s)	72, 146, 533, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 569
HpyF3I	CTNAG	1 cut(s)	547
Hsp92II	CATG	2 cut(s)	102, 661
KpnI	GGTACC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	90, 292, 601, 682
LmnI	GCTCC	4 cut(s)	140, 150, 373, 704
Lsp1109I	GCAGC	4 cut(s)	130, 352, 547, 559
LweI	GCATC	3 cut(s)	166, 238, 379
MaeI	CTAG	1 cut(s)	721
MaeIII	GTNAC	2 cut(s)	44, 50
MalI	GATC	4 cut(s)	92, 294, 603, 684
MboI	GATC	4 cut(s)	90, 292, 601, 682
MboII	GAAGA	3 cut(s)	222, 415, 509
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	2 cut(s)	443, 634
MluNI	TGGCCA	1 cut(s)	18
MmeI	TCCRAC	3 cut(s)	195, 379, 485
Mox20I	TGGCCA	1 cut(s)	18
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	18
MspI	CCGG	3 cut(s)	42, 328, 623
MspR9I	CCNGG	2 cut(s)	104, 328
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	530, 569
NciI	CCSGG	1 cut(s)	328
NdeII	GATC	4 cut(s)	90, 292, 601, 682
NlaIII	CATG	2 cut(s)	102, 661
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	2 cut(s)	44, 50
NruI	TCGCGA	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	420
PctI	GAATGC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	145, 367, 562, 574
Psp6I	CCWGG	1 cut(s)	102
PspEI	GGTNACC	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	320
PstI	CTGCAG	1 cut(s)	148
RruI	TCGCGA	1 cut(s)	314
RsaI	GTAC	4 cut(s)	320, 332, 441, 470
RsaNI	GTAC	4 cut(s)	319, 331, 440, 469
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	4 cut(s)	144, 366, 561, 573
Sau3AI	GATC	4 cut(s)	90, 292, 601, 682
ScrFI	CCNGG	2 cut(s)	104, 328
SduI	GDGCHC	1 cut(s)	86
SfaNI	GCATC	3 cut(s)	166, 238, 379
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	2 cut(s)	443, 634
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	1 cut(s)	181
SspI	AATATT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	721
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	102, 326
TaaI	ACNGT	4 cut(s)	50, 225, 335, 375
TaqI	TCGA	4 cut(s)	426, 495, 668, 687
TasI	AATT	2 cut(s)	443, 634
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	380
TseFI	GTSAC	2 cut(s)	44, 50
TseI	GCWGC	4 cut(s)	143, 365, 560, 572
Tsp45I	GTSAC	2 cut(s)	44, 50
TspDTI	ATGAA	2 cut(s)	81, 156
TspRI	CASTG	1 cut(s)	380
XagI	CCTNNNNNAGG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.