MD01G1071700.v1.1

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000601
Physical Location & Seq
Reverse (-)
17699772 .. 17700668
897 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1071700.v1.1.491

Sequence Viewer

Length: 897 bp
ATGGCACCACCAAAGTTAGCAATTTATTTAGCACTCCTCATTTCAGTAAGCCTATCAATACAATTTGGAGCTGAAGCTGCAGGCATTGCCATTTACTGGGGACAAAATGGGAATGAGGGTACATTAGAGGAAACTTGTGCCACAGGCAACTATGAGTATGTTATCATAGCTTTCCTACCAACTTTTGGCAATGGCCAGACCCCCATGATCAACCTAGCCGGGCACTGTGATCCGTACACGAATGGCTGCACTGGTCTGAGCTCCGACATTAAATCATGCCAATCGAAAGGTATCAAGGTCATTCTTTCAATCGGAGGAGGAGCTGGGAGCTACTACCTTACATCTAAAGAGGATGCTAGGCAGGTAGCAACTTATTTGTGGAACAATTTCTTGGGGGGAACCTCTTCATCTCGCCCGCTCGGTGCCGCTGCGTTAGATGGAATTGATTTCGATATCGAGGGAGGAACACCCCTACATTGGGATGACCTAGCAAGGTTCCTCTCTGCTTATAGCAAAAAGGGGAAGAAAGTTTACTTAACTGCAGCTCCTCAGTGCCCTTTCCCTGATGCTTGGGTTGGAGGTGCCCTAAAGACGGGCCTTTTCGACAATGTTTGGGTGCAATTCTACAACAACCCTCCTTGCCAATACTCCTCCGATCTTAGCAACCTTGAAAATGCATGGAAGCAGTGGATTTCAGACATTCAGGCGACCAAGATATTCCTAGGACTGCCAGCTGCTCCTGATGCTGCTGGAAGTGGATTCATTCCTGTGAATGATCTCATTTCTTATGTGCTTCCAGCAATTAAGGGTTCTTCTAAGTATGGAGGGGTTATGCTGTGGTCTAAGTATTATGATGATCAAGACAAATATAGCGCTTCGATCAAGAGCCATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

299

Amino Acids

31.98

Weight (kDa)

5.18

Isoelectric Point (pI)

26.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 29 - 246 4.3e-23 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AccB1I GGYRCC 3 cut(s) 4, 422, 581
AccB7I CCANNNNNTGG 2 cut(s) 96, 185
AccBSI CCGCTC 1 cut(s) 418
AciI CCGC 2 cut(s) 416, 426
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 121, 236
AfeI AGCGCT 1 cut(s) 874
AfiI CCNNNNNNNGG 5 cut(s) 96, 185, 477, 478, 592
AgsI TTSAA 2 cut(s) 309, 671
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 8 cut(s) 71, 77, 170, 261, 323, 330, 545, 734
AluI AGCT 8 cut(s) 71, 77, 170, 261, 323, 330, 545, 734
Alw21I GWGCWC 1 cut(s) 263
AlwI GGATC 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 874
AoxI GGCC 2 cut(s) 193, 595
ApeKI GCWGC 6 cut(s) 77, 246, 428, 542, 734, 746
Asp700I GAANNNNTTC 2 cut(s) 386, 403
AspA2I CCTAGG 1 cut(s) 721
AspLEI GCGC 1 cut(s) 875
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 1 cut(s) 220
AvrII CCTAGG 1 cut(s) 721
BaeGI GKGCMC 3 cut(s) 225, 557, 586
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 3 cut(s) 4, 422, 581
BanII GRGCYC 1 cut(s) 263
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 6 cut(s) 64, 233, 415, 554, 721, 733
BccI CCATC 1 cut(s) 431
BclI TGATCA 2 cut(s) 207, 856
BcnI CCSGG 1 cut(s) 220
BfaI CTAG 4 cut(s) 215, 357, 488, 722
BfmI CTRYAG 2 cut(s) 78, 540
BfoI RGCGCY 1 cut(s) 876
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 7 cut(s) 78, 247, 426, 429, 543, 735, 747
BlnI CCTAGG 1 cut(s) 721
BlsI GCNGC 7 cut(s) 79, 248, 427, 430, 544, 736, 748
Bme1390I CCNGG 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 5 cut(s) 6, 400, 424, 497, 583
BmrFI CCNGG 1 cut(s) 220
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 3 cut(s) 343, 556, 733
BmuI ACTGGG 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 185, 477, 478, 592
Bse1I ACTGG 2 cut(s) 101, 256
Bse3DI GCAATG 2 cut(s) 84, 196
BseDI CCNNGG 1 cut(s) 721
BseGI GGATG 2 cut(s) 358, 487
BseLI CCNNNNNNNGG 5 cut(s) 96, 185, 477, 478, 592
BseMI GCAATG 2 cut(s) 84, 196
BseMII CTCAG 2 cut(s) 248, 563
BseNI ACTGG 2 cut(s) 101, 256
BseRI GAGGAG 5 cut(s) 26, 330, 333, 537, 640
BseSI GKGCMC 3 cut(s) 225, 557, 586
BseXI GCAGC 6 cut(s) 64, 233, 415, 554, 721, 733
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 232
BshFI GGCC 2 cut(s) 195, 597
BshNI GGYRCC 3 cut(s) 4, 422, 581
BsiHKAI GWGCWC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 5 cut(s) 96, 185, 477, 478, 592
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 195, 597
Bsp1286I GDGCHC 4 cut(s) 225, 263, 557, 586
Bsp143I GATC 6 cut(s) 207, 229, 655, 775, 856, 879
BspACI CCGC 2 cut(s) 416, 426
BspANI GGCC 2 cut(s) 195, 597
BspCNI CTCAG 2 cut(s) 249, 562
BspLI GGNNCC 5 cut(s) 6, 400, 424, 497, 583
BspMAI CTGCAG 2 cut(s) 82, 544
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 3 cut(s) 4, 422, 581
BsrBI CCGCTC 1 cut(s) 418
BsrDI GCAATG 2 cut(s) 84, 196
BsrI ACTGG 2 cut(s) 101, 256
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 6 cut(s) 207, 229, 655, 775, 856, 879
BssT1I CCWWGG 1 cut(s) 721
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 409
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 82, 416, 732
BstDEI CTNAG 5 cut(s) 257, 549, 659, 816, 843
BstF5I GGATG 2 cut(s) 358, 487
BstH2I RGCGCY 1 cut(s) 876
BstHHI GCGC 1 cut(s) 875
BstKTI GATC 6 cut(s) 210, 232, 658, 778, 859, 882
BstMBI GATC 6 cut(s) 207, 229, 655, 775, 856, 879
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 743
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 2 cut(s) 78, 540
BstSLI GKGCMC 3 cut(s) 225, 557, 586
BstV1I GCAGC 6 cut(s) 64, 233, 415, 554, 721, 733
BsuRI GGCC 2 cut(s) 195, 597
BtsCI GGATG 2 cut(s) 358, 487
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 4 cut(s) 223, 249, 557, 692
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 3 cut(s) 82, 416, 732
CfoI GCGC 1 cut(s) 875
Cfr13I GGNCC 1 cut(s) 595
Csp6I GTAC 2 cut(s) 120, 235
CviAII CATG 4 cut(s) 205, 276, 678, 890
CviQI GTAC 2 cut(s) 120, 235
DdeI CTNAG 5 cut(s) 257, 549, 659, 816, 843
DpnI GATC 6 cut(s) 209, 231, 657, 777, 858, 881
DpnII GATC 6 cut(s) 207, 229, 655, 775, 856, 879
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 263
Eco32I GATATC 1 cut(s) 454
Eco47III AGCGCT 1 cut(s) 874
Eco53kI GAGCTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 261
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 721
EcoT22I ATGCAT 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 4 cut(s) 208, 279, 681, 893
FaqI GGGAC 1 cut(s) 114
FatI CATG 4 cut(s) 204, 275, 677, 889
FauI CCCGC 1 cut(s) 423
FbaI TGATCA 2 cut(s) 207, 856
Fnu4HI GCNGC 7 cut(s) 78, 247, 426, 429, 543, 735, 747
FokI GGATG 2 cut(s) 365, 494
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 7 cut(s) 78, 247, 426, 429, 543, 735, 747
FspBI CTAG 4 cut(s) 215, 357, 488, 722
GlaI GCGC 1 cut(s) 874
GluI GCNGC 7 cut(s) 78, 247, 426, 429, 543, 735, 747
GsaI CCCAGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 876
HaeIII GGCC 2 cut(s) 195, 597
HapII CCGG 1 cut(s) 219
HhaI GCGC 1 cut(s) 875
Hin1II CATG 4 cut(s) 208, 279, 681, 893
Hin6I GCGC 1 cut(s) 873
HinP1I GCGC 1 cut(s) 873
HinfI GANTC 1 cut(s) 759
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 237, 532
Hpy188I TCNGA 5 cut(s) 258, 265, 314, 655, 697
Hpy188III TCNNGA 3 cut(s) 740, 860, 883
Hpy8I GTNNAC 2 cut(s) 237, 532
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 5 cut(s) 80, 249, 542, 619, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 743
HpyF3I CTNAG 5 cut(s) 257, 549, 659, 816, 843
Hsp92II CATG 4 cut(s) 208, 279, 681, 893
HspAI GCGC 1 cut(s) 873
Ksp22I TGATCA 2 cut(s) 207, 856
Kzo9I GATC 6 cut(s) 207, 229, 655, 775, 856, 879
LmnI GCTCC 6 cut(s) 68, 266, 320, 327, 550, 742
Lsp1109I GCAGC 6 cut(s) 64, 233, 415, 554, 721, 733
LweI GCATC 3 cut(s) 343, 556, 733
MaeI CTAG 4 cut(s) 215, 357, 488, 722
MalI GATC 6 cut(s) 209, 231, 657, 777, 858, 881
MbiI CCGCTC 1 cut(s) 418
MboI GATC 6 cut(s) 207, 229, 655, 775, 856, 879
MboII GAAGA 3 cut(s) 396, 535, 804
MhlI GDGCHC 4 cut(s) 225, 263, 557, 586
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 6 cut(s) 21, 62, 385, 441, 620, 801
MluNI TGGCCA 1 cut(s) 195
MmeI TCCRAC 2 cut(s) 288, 556
Mox20I TGGCCA 1 cut(s) 195
Mph1103I ATGCAT 1 cut(s) 679
MroXI GAANNNNTTC 2 cut(s) 386, 403
MscI TGGCCA 1 cut(s) 195
MseI TTAA 3 cut(s) 270, 536, 804
MslI CAYNNNNRTG 2 cut(s) 480, 767
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 2 cut(s) 428, 734
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 220
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 743
NciI CCSGG 1 cut(s) 220
NdeII GATC 6 cut(s) 207, 229, 655, 775, 856, 879
NlaIII CATG 4 cut(s) 208, 279, 681, 893
NlaIV GGNNCC 5 cut(s) 6, 400, 424, 497, 583
NsiI ATGCAT 1 cut(s) 679
PdmI GAANNNNTTC 2 cut(s) 386, 403
PfeI GAWTC 1 cut(s) 759
PflMI CCANNNNNTGG 2 cut(s) 96, 185
PkrI GCNGC 7 cut(s) 79, 248, 427, 430, 544, 736, 748
Psp124BI GAGCTC 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 323
PspN4I GGNNCC 5 cut(s) 6, 400, 424, 497, 583
PspPI GGNCC 1 cut(s) 595
PstI CTGCAG 2 cut(s) 82, 544
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 2 cut(s) 121, 236
RsaNI GTAC 2 cut(s) 120, 235
RseI CAYNNNNRTG 2 cut(s) 480, 767
SacI GAGCTC 1 cut(s) 263
SaqAI TTAA 3 cut(s) 270, 536, 804
SatI GCNGC 7 cut(s) 78, 247, 426, 429, 543, 735, 747
Sau3AI GATC 6 cut(s) 207, 229, 655, 775, 856, 879
Sau96I GGNCC 1 cut(s) 595
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 4 cut(s) 225, 263, 557, 586
SfaNI GCATC 3 cut(s) 343, 556, 733
SfcI CTRYAG 2 cut(s) 78, 540
SmiMI CAYNNNNRTG 2 cut(s) 480, 767
Sse9I AATT 6 cut(s) 21, 62, 385, 441, 620, 801
SsiI CCGC 2 cut(s) 416, 426
SspMI CTAG 4 cut(s) 215, 357, 488, 722
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 5 cut(s) 284, 450, 456, 603, 878
TasI AATT 6 cut(s) 21, 62, 385, 441, 620, 801
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 1 cut(s) 759
Tru1I TTAA 3 cut(s) 270, 536, 804
Tru9I TTAA 3 cut(s) 270, 536, 804
TscAI CASTG 4 cut(s) 230, 256, 557, 692
TseI GCWGC 6 cut(s) 77, 246, 428, 542, 734, 746
TspDTI ATGAA 2 cut(s) 396, 751
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 4 cut(s) 230, 256, 557, 692
Van91I CCANNNNNTGG 2 cut(s) 96, 185
XmaJI CCTAGG 1 cut(s) 721
XmnI GAANNNNTTC 2 cut(s) 386, 403
XspI CTAG 4 cut(s) 215, 357, 488, 722
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.