Rroxscaffold_4G00280040

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000601
Physical Location & Seq
Forward (+)
2715081 .. 2715978
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280040.1

Sequence Viewer

Length: 855 bp
ATGGCTTCAATTTTAGTAGCAGCATTGCTATCTTTAGCAACACTACTACTTCTGGCAGTTGGGTCTAATGCAGGCGGAATCGCGATTTACTGGGGCCAAAATGGAAATGAAGGCACATTAGCACAAACATGTGCCTCAGGGAACTACAAGTTTGTAAACATAGCTTTCCTTTCATCATTTGGCAATGGCCGAACCCCTACCATAAACCTTGCGGGTCACTGTGACCCGTACAGCAATGGATGCACGAAGTTCAGCTCGCAAATAAAGTCGTGCCAAGCCAAAGGCATCAAGGTTATACGATCTATTGGAGGTGGTGCTGGAGGCTACTCTCTAGCTTCATCCAACGATGCCCGCCAATTTGGTGCTTACTTGTGGAACAACTTCTTGGGAGGACACTCCTCTTCAAGGCCTTTGGGAGATGCTGTTTTGGATGGAGTTGACTTCGACATTGAAGGAGGGAATGACCAGTACTATGATGACCTTGCTAGGTACCTTTCGGCACAGAGCAAGAAGGTCGGCAGCAAAGTTTACTTGACTGCTGCTCCACAGTGCCTATTTGACTATGTTTGGGTTCAATTTTACAACAACCCTCCTTGTCAGTACACTTCTGGTGATGTCACCAATCTCGAAAACGCTTGGAAGCAATGGACTTCAGCCATTCCTGCACAAAAGATCTTTTTAGGACTCCCTGCTGCACCTCAAGCTGCTGGTAGCGGATTCATTCCTGCTGCTGCTCTCACTTCAAAAGTCCTTCCGGGTATCAAAAATTCTGCTAAATATGGTGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTTGATGGATACAGCTACTCCATAAAGAATCATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

284

Amino Acids

30.16

Weight (kDa)

8.41

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 27 - 230 2e-16 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 489
AccB1I GGYRCC 1 cut(s) 489
AccII CGCG 1 cut(s) 83
AciI CCGC 4 cut(s) 75, 212, 352, 714
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 4 cut(s) 230, 470, 491, 602
AfiI CCNNNNNNNGG 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 5 cut(s) 9, 405, 452, 575, 744
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 5 cut(s) 164, 255, 335, 704, 831
AluI AGCT 5 cut(s) 164, 255, 335, 704, 831
AoxI GGCC 3 cut(s) 94, 187, 407
ApeKI GCWGC 7 cut(s) 20, 519, 539, 692, 704, 728, 731
ApoI RAATTY 1 cut(s) 766
Asp700I GAANNNNTTC 1 cut(s) 380
Asp718I GGTACC 1 cut(s) 489
AspS9I GGNCC 2 cut(s) 94, 798
AsuC2I CCSGG 1 cut(s) 756
AsuHPI GGTGA 2 cut(s) 610, 623
AvaII GGWCC 1 cut(s) 798
AxyI CCTNAGG 1 cut(s) 136
BanI GGYRCC 1 cut(s) 489
BbvI GCAGC 7 cut(s) 32, 526, 531, 679, 691, 715, 718
BccI CCATC 2 cut(s) 425, 815
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciVI GTATCC 1 cut(s) 818
BcnI CCSGG 1 cut(s) 756
BfaI CTAG 3 cut(s) 332, 486, 853
BfuI GTATCC 1 cut(s) 818
BglII AGATCT 1 cut(s) 672
BisI GCNGC 7 cut(s) 21, 520, 540, 693, 705, 729, 732
BlsI GCNGC 7 cut(s) 22, 521, 541, 694, 706, 730, 733
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 1 cut(s) 798
BmgT120I GGNCC 2 cut(s) 94, 798
BmiI GGNNCC 2 cut(s) 95, 491
BmrFI CCNGG 1 cut(s) 756
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 4 cut(s) 230, 294, 337, 409
BmuI ACTGGG 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 684
BpuMI CCSGG 1 cut(s) 756
BsaXI ACNNNNNCTCC 6 cut(s) 408, 438, 526, 556, 818, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 2 cut(s) 95, 466
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 4 cut(s) 23, 190, 241, 650
BseGI GGATG 3 cut(s) 245, 338, 436
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMI GCAATG 4 cut(s) 23, 190, 241, 650
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 95, 466
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 7 cut(s) 32, 526, 531, 679, 691, 715, 718
BsgI GTGCAG 2 cut(s) 648, 678
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 96, 189, 409
BshNI GGYRCC 1 cut(s) 489
BsiSI CCGG 1 cut(s) 755
BslI CCNNNNNNNGG 1 cut(s) 405
BsnI GGCC 3 cut(s) 96, 189, 409
Bsp143I GATC 3 cut(s) 299, 672, 814
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 4 cut(s) 75, 212, 352, 714
BspANI GGCC 3 cut(s) 96, 189, 409
BspCNI CTCAG 1 cut(s) 149
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 95, 491
BspT107I GGYRCC 1 cut(s) 489
BsrDI GCAATG 4 cut(s) 23, 190, 241, 650
BsrI ACTGG 2 cut(s) 95, 466
BssMI GATC 3 cut(s) 299, 672, 814
Bst4CI ACNGT 2 cut(s) 221, 549
Bst6I CTCTTC 1 cut(s) 406
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 3 cut(s) 73, 257, 352
BstDEI CTNAG 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 245, 338, 436
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 3 cut(s) 302, 675, 817
BstMBI GATC 3 cut(s) 299, 672, 814
BstMWI GCNNNNNNNGC 3 cut(s) 240, 662, 701
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 754
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 7 cut(s) 32, 526, 531, 679, 691, 715, 718
BstX2I RGATCY 1 cut(s) 672
BstYI RGATCY 1 cut(s) 672
Bsu36I CCTNAGG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 818
BsuRI GGCC 3 cut(s) 96, 189, 409
BtsCI GGATG 3 cut(s) 245, 338, 436
BtsIMutI CAGTG 2 cut(s) 217, 554
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 3 cut(s) 73, 257, 352
Cfr13I GGNCC 2 cut(s) 94, 798
Csp6I GTAC 4 cut(s) 229, 469, 490, 601
CviAII CATG 3 cut(s) 129, 790, 848
CviQI GTAC 4 cut(s) 229, 469, 490, 601
DdeI CTNAG 1 cut(s) 136
DpnI GATC 3 cut(s) 301, 674, 816
DpnII GATC 3 cut(s) 299, 672, 814
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
EciI GGCGGA 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 798
Eco57I CTGAAG 1 cut(s) 636
Eco81I CCTNAGG 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 403
FaeI CATG 3 cut(s) 132, 793, 851
FatI CATG 3 cut(s) 128, 789, 847
FauI CCCGC 2 cut(s) 205, 359
Fnu4HI GCNGC 7 cut(s) 21, 520, 540, 693, 705, 729, 732
FokI GGATG 3 cut(s) 252, 325, 443
Fsp4HI GCNGC 7 cut(s) 21, 520, 540, 693, 705, 729, 732
FspBI CTAG 3 cut(s) 332, 486, 853
GluI GCNGC 7 cut(s) 21, 520, 540, 693, 705, 729, 732
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 3 cut(s) 96, 189, 409
HapII CCGG 1 cut(s) 755
Hin1II CATG 3 cut(s) 132, 793, 851
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 4 cut(s) 78, 684, 717, 844
HpaII CCGG 1 cut(s) 755
HphI GGTGA 2 cut(s) 610, 623
Hpy166II GTNNAC 4 cut(s) 157, 439, 529, 603
Hpy188III TCNNGA 3 cut(s) 82, 626, 818
Hpy8I GTNNAC 4 cut(s) 157, 439, 529, 603
HpyAV CCTTC 4 cut(s) 104, 446, 505, 761
HpyCH4III ACNGT 2 cut(s) 221, 549
HpyCH4V TGCA 4 cut(s) 71, 243, 665, 695
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 662, 701
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 3 cut(s) 132, 793, 851
KpnI GGTACC 1 cut(s) 493
Kzo9I GATC 3 cut(s) 299, 672, 814
LmnI GCTCC 1 cut(s) 547
Lsp1109I GCAGC 7 cut(s) 32, 526, 531, 679, 691, 715, 718
LweI GCATC 4 cut(s) 230, 294, 337, 409
MaeI CTAG 3 cut(s) 332, 486, 853
MaeIII GTNAC 3 cut(s) 215, 221, 616
MalI GATC 3 cut(s) 301, 674, 816
MboI GATC 3 cut(s) 299, 672, 814
MboII GAAGA 1 cut(s) 393
MflI RGATCY 1 cut(s) 672
MluCI AATT 4 cut(s) 9, 356, 575, 766
MlyI GAGTC 1 cut(s) 678
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 8 cut(s) 145, 302, 314, 383, 409, 449, 600, 708
MroXI GAANNNNTTC 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 127
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 756
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 240, 662, 701
NciI CCSGG 1 cut(s) 756
NdeII GATC 3 cut(s) 299, 672, 814
NlaIII CATG 3 cut(s) 132, 793, 851
NlaIV GGNNCC 2 cut(s) 95, 491
NmuCI GTSAC 3 cut(s) 215, 221, 616
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 132
PceI AGGCCT 1 cut(s) 409
PciI ACATGT 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 78, 717, 844
PkrI GCNGC 7 cut(s) 22, 521, 541, 694, 706, 730, 733
PleI GAGTC 1 cut(s) 678
PpsI GAGTC 1 cut(s) 678
PscI ACATGT 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 95, 491
PspPI GGNCC 2 cut(s) 94, 798
PsuI RGATCY 1 cut(s) 672
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 4 cut(s) 230, 470, 491, 602
RsaNI GTAC 4 cut(s) 229, 469, 490, 601
RseI CAYNNNNRTG 1 cut(s) 127
SatI GCNGC 7 cut(s) 21, 520, 540, 693, 705, 729, 732
Sau3AI GATC 3 cut(s) 299, 672, 814
Sau96I GGNCC 2 cut(s) 94, 798
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 1 cut(s) 678
ScrFI CCNGG 1 cut(s) 756
SfaNI GCATC 4 cut(s) 230, 294, 337, 409
SinI GGWCC 1 cut(s) 798
SmiMI CAYNNNNRTG 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 699
SmoI CTYRAG 1 cut(s) 699
Sse9I AATT 4 cut(s) 9, 356, 575, 766
SseBI AGGCCT 1 cut(s) 409
SsiI CCGC 4 cut(s) 75, 212, 352, 714
SspMI CTAG 3 cut(s) 332, 486, 853
StuI AGGCCT 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 754
TaaI ACNGT 2 cut(s) 221, 549
TaqI TCGA 2 cut(s) 444, 627
TasI AATT 4 cut(s) 9, 356, 575, 766
TatI WGTACW 2 cut(s) 468, 600
TfiI GAWTC 3 cut(s) 78, 717, 844
TscAI CASTG 2 cut(s) 224, 554
TseFI GTSAC 3 cut(s) 215, 221, 616
TseI GCWGC 7 cut(s) 20, 519, 539, 692, 704, 728, 731
Tsp45I GTSAC 3 cut(s) 215, 221, 616
TspDTI ATGAA 4 cut(s) 123, 162, 327, 709
TspRI CASTG 2 cut(s) 224, 554
VpaK11BI GGWCC 1 cut(s) 798
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 1 cut(s) 766
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 3 cut(s) 332, 486, 853
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.