Rh1AG429400

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000601
Physical Location & Seq
Forward (+)
65668064 .. 65668969
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG429400.1

Sequence Viewer

Length: 906 bp
ATGGCCTCAATTTCAGTAGCAGCATTGCTATCTTTAGTGACATTGCTACTTCTGGCGATTGGGTCTAATGCAGGCGGAATCGCGATTTACTGGGGCCAAAATGGAAATGAAGCCACATTAGCACAAACATGTACCTCAGGGAACTACAAGTTTGTAAACATAGCTTTCCTCTCATCATTTGGCAATGGCCGAACCCCTACCATAAACCTTGCGGGTCACTGTGACCCGTCCAGCAATGGATGCACCAAGTTCAGCTCGCAAATCAAGTCGTGCCAAGCCAGAGGCATCAAGGTCATACTCTCTATTGGGGGAGGCTGGGGAGGTACCGGAGGCTACTCCCTAGCTTCATCTGAAGATGCCCGCCAAGTTGGTGCTTACTTGTGGAACAACTTCTTGGGAGGACACTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTCGACATTGAAGGAGGGGATGGCCAGTACTGGGATGACCTTGCTAGGTACCTTTCGGCGCATAGCAAGAAGGGTGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTTAAGACAGGCCTATTTGACTATGTTTGGGTTCAATTCTACAACAACCCTCCTTGTCAGTACACTTCTGGGGCTGTCACCAATCTCAAAGACGCTTGGAAGCAATGGACTTCAGCCATTCCTGCACAGAAGATCTTCTTAGGACTCCCTGCTGCACCTCAAGCTGCTGGGAGCGGATTTATTCCTGCTGCTGCTCTCACTTCACAAGTTCTTCCGGGTATAAAAAATTCAGCTAAATATGGTGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTTGATGGATACAGCTCCTCCATCAAGAATCATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

301

Amino Acids

31.71

Weight (kDa)

8.42

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 27 - 249 1.4e-23 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 323, 498
AccB1I GGYRCC 2 cut(s) 323, 498
AccBSI CCGCTC 1 cut(s) 765
AccII CGCG 1 cut(s) 83
AciI CCGC 4 cut(s) 75, 212, 361, 765
AcoI YGGCCR 2 cut(s) 187, 472
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 2 cut(s) 372, 687
AfaI GTAC 5 cut(s) 133, 325, 479, 500, 653
AfiI CCNNNNNNNGG 2 cut(s) 414, 481
AflII CTTAAG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 3 cut(s) 414, 461, 626
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 6 cut(s) 164, 255, 344, 755, 824, 882
AluI AGCT 6 cut(s) 164, 255, 344, 755, 824, 882
AoxI GGCC 6 cut(s) 3, 94, 187, 416, 472, 601
ApeKI GCWGC 6 cut(s) 20, 548, 743, 755, 779, 782
ApoI RAATTY 1 cut(s) 817
Asp700I GAANNNNTTC 2 cut(s) 389, 725
Asp718I GGTACC 2 cut(s) 323, 498
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 2 cut(s) 94, 849
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 1 cut(s) 661
AvaII GGWCC 1 cut(s) 849
AxyI CCTNAGG 1 cut(s) 136
BalI TGGCCA 1 cut(s) 474
BanI GGYRCC 2 cut(s) 323, 498
BbvI GCAGC 6 cut(s) 32, 535, 730, 742, 766, 769
BccI CCATC 4 cut(s) 434, 464, 866, 896
BceAI ACGGC 1 cut(s) 403
BciVI GTATCC 1 cut(s) 869
BcnI CCSGG 1 cut(s) 807
BfaI CTAG 3 cut(s) 341, 495, 904
BfrI CTTAAG 1 cut(s) 593
BfuI GTATCC 1 cut(s) 869
BglII AGATCT 1 cut(s) 723
BisI GCNGC 6 cut(s) 21, 549, 744, 756, 780, 783
BlsI GCNGC 6 cut(s) 22, 550, 745, 757, 781, 784
BmcAI AGTACT 1 cut(s) 479
Bme1390I CCNGG 1 cut(s) 807
Bme18I GGWCC 1 cut(s) 849
BmgT120I GGNCC 2 cut(s) 94, 849
BmiI GGNNCC 3 cut(s) 95, 325, 500
BmrFI CCNGG 1 cut(s) 807
BmrI ACTGGG 2 cut(s) 100, 490
BmsI GCATC 5 cut(s) 230, 294, 346, 418, 562
BmuI ACTGGG 2 cut(s) 100, 490
BpuEI CTTGAG 1 cut(s) 735
BpuMI CCSGG 1 cut(s) 807
BsaWI WCCGGW 1 cut(s) 326
BsaXI ACNNNNNCTCC 6 cut(s) 417, 447, 535, 565, 869, 899
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 481
Bse1I ACTGG 3 cut(s) 95, 475, 485
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 5 cut(s) 23, 41, 190, 241, 701
BseGI GGATG 4 cut(s) 245, 445, 475, 490
BseLI CCNNNNNNNGG 2 cut(s) 414, 481
BseMI GCAATG 5 cut(s) 23, 41, 190, 241, 701
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 3 cut(s) 95, 475, 485
BseRI GAGGAG 2 cut(s) 397, 874
BseXI GCAGC 6 cut(s) 32, 535, 730, 742, 766, 769
BseYI CCCAGC 2 cut(s) 315, 758
BsgI GTGCAG 2 cut(s) 699, 729
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 6 cut(s) 5, 96, 189, 418, 474, 603
BshNI GGYRCC 2 cut(s) 323, 498
BsiSI CCGG 2 cut(s) 327, 806
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 2 cut(s) 414, 481
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 6 cut(s) 5, 96, 189, 418, 474, 603
Bsp143I GATC 2 cut(s) 723, 865
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 4 cut(s) 75, 212, 361, 765
BspANI GGCC 6 cut(s) 5, 96, 189, 418, 474, 603
BspCNI CTCAG 1 cut(s) 149
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 3 cut(s) 95, 325, 500
BspT107I GGYRCC 2 cut(s) 323, 498
BspTI CTTAAG 1 cut(s) 593
BsrBI CCGCTC 1 cut(s) 765
BsrDI GCAATG 5 cut(s) 23, 41, 190, 241, 701
BsrI ACTGG 3 cut(s) 95, 475, 485
BssMI GATC 2 cut(s) 723, 865
Bst4CI ACNGT 2 cut(s) 221, 558
Bst6I CTCTTC 1 cut(s) 415
BstAFI CTTAAG 1 cut(s) 593
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 3 cut(s) 73, 257, 361
BstDEI CTNAG 2 cut(s) 136, 730
BstENI CCTNNNNNAGG 1 cut(s) 412
BstF5I GGATG 4 cut(s) 245, 445, 475, 490
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 2 cut(s) 726, 868
BstMBI GATC 2 cut(s) 723, 865
BstMWI GCNNNNNNNGC 4 cut(s) 119, 240, 713, 752
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 805
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 6 cut(s) 32, 535, 730, 742, 766, 769
BstX2I RGATCY 1 cut(s) 723
BstYI RGATCY 1 cut(s) 723
Bsu36I CCTNAGG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 869
BsuRI GGCC 6 cut(s) 5, 96, 189, 418, 474, 603
BtsCI GGATG 4 cut(s) 245, 445, 475, 490
BtsIMutI CAGTG 2 cut(s) 217, 563
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 3 cut(s) 73, 257, 361
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 2 cut(s) 94, 849
CseI GACGC 1 cut(s) 692
Csp6I GTAC 5 cut(s) 132, 324, 478, 499, 652
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 3 cut(s) 129, 841, 899
CviQI GTAC 5 cut(s) 132, 324, 478, 499, 652
DdeI CTNAG 2 cut(s) 136, 730
DpnI GATC 2 cut(s) 725, 867
DpnII GATC 2 cut(s) 723, 865
EaeI YGGCCR 2 cut(s) 187, 472
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
EciI GGCGGA 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 849
Eco57I CTGAAG 2 cut(s) 372, 687
Eco81I CCTNAGG 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 412
FaeI CATG 3 cut(s) 132, 844, 902
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 1 cut(s) 546
FatI CATG 3 cut(s) 128, 840, 898
FauI CCCGC 2 cut(s) 205, 368
Fnu4HI GCNGC 6 cut(s) 21, 549, 744, 756, 780, 783
FokI GGATG 4 cut(s) 252, 452, 482, 497
Fsp4HI GCNGC 6 cut(s) 21, 549, 744, 756, 780, 783
FspBI CTAG 3 cut(s) 341, 495, 904
GlaI GCGC 1 cut(s) 510
GluI GCNGC 6 cut(s) 21, 549, 744, 756, 780, 783
GsaI CCCAGC 2 cut(s) 319, 762
HaeIII GGCC 6 cut(s) 5, 96, 189, 418, 474, 603
HapII CCGG 2 cut(s) 327, 806
HgaI GACGC 1 cut(s) 692
HhaI GCGC 1 cut(s) 511
Hin1II CATG 3 cut(s) 132, 844, 902
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 3 cut(s) 78, 735, 895
HpaII CCGG 2 cut(s) 327, 806
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 4 cut(s) 157, 448, 538, 654
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 4 cut(s) 82, 569, 869, 892
Hpy8I GTNNAC 4 cut(s) 157, 448, 538, 654
HpyAV CCTTC 2 cut(s) 455, 514
HpyCH4III ACNGT 2 cut(s) 221, 558
HpyCH4V TGCA 5 cut(s) 71, 243, 590, 716, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 240, 713, 752
HpyF3I CTNAG 2 cut(s) 136, 730
Hsp92II CATG 3 cut(s) 132, 844, 902
HspAI GCGC 1 cut(s) 509
KpnI GGTACC 2 cut(s) 327, 502
Kzo9I GATC 2 cut(s) 723, 865
LmnI GCTCC 3 cut(s) 556, 762, 887
Lsp1109I GCAGC 6 cut(s) 32, 535, 730, 742, 766, 769
LweI GCATC 5 cut(s) 230, 294, 346, 418, 562
MaeI CTAG 3 cut(s) 341, 495, 904
MaeIII GTNAC 4 cut(s) 37, 215, 221, 667
MalI GATC 2 cut(s) 725, 867
MbiI CCGCTC 1 cut(s) 765
MboI GATC 2 cut(s) 723, 865
MboII GAAGA 5 cut(s) 365, 402, 718, 733, 794
MflI RGATCY 1 cut(s) 723
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 3 cut(s) 9, 626, 817
MluNI TGGCCA 1 cut(s) 474
MlyI GAGTC 1 cut(s) 729
MmeI TCCRAC 1 cut(s) 562
Mox20I TGGCCA 1 cut(s) 474
MroXI GAANNNNTTC 2 cut(s) 389, 725
MscI TGGCCA 1 cut(s) 474
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 1 cut(s) 127
Msp20I TGGCCA 1 cut(s) 474
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 2 cut(s) 327, 806
MspR9I CCNGG 1 cut(s) 807
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 119, 240, 713, 752
NciI CCSGG 1 cut(s) 807
NdeII GATC 2 cut(s) 723, 865
NlaIII CATG 3 cut(s) 132, 844, 902
NlaIV GGNNCC 3 cut(s) 95, 325, 500
NmuCI GTSAC 4 cut(s) 37, 215, 221, 667
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 132
PceI AGGCCT 1 cut(s) 603
PciI ACATGT 1 cut(s) 128
PdmI GAANNNNTTC 2 cut(s) 389, 725
PfeI GAWTC 2 cut(s) 78, 895
PkrI GCNGC 6 cut(s) 22, 550, 745, 757, 781, 784
PleI GAGTC 1 cut(s) 729
PpsI GAGTC 1 cut(s) 729
PscI ACATGT 1 cut(s) 128
PspFI CCCAGC 2 cut(s) 315, 758
PspN4I GGNNCC 3 cut(s) 95, 325, 500
PspPI GGNCC 2 cut(s) 94, 849
PsuI RGATCY 1 cut(s) 723
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 5 cut(s) 133, 325, 479, 500, 653
RsaNI GTAC 5 cut(s) 132, 324, 478, 499, 652
RseI CAYNNNNRTG 1 cut(s) 127
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 6 cut(s) 21, 549, 744, 756, 780, 783
Sau3AI GATC 2 cut(s) 723, 865
Sau96I GGNCC 2 cut(s) 94, 849
ScaI AGTACT 1 cut(s) 479
SchI GAGTC 1 cut(s) 729
ScrFI CCNGG 1 cut(s) 807
SfaNI GCATC 5 cut(s) 230, 294, 346, 418, 562
SinI GGWCC 1 cut(s) 849
SmiMI CAYNNNNRTG 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 593, 750
SmoI CTYRAG 2 cut(s) 593, 750
Sse9I AATT 3 cut(s) 9, 626, 817
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 4 cut(s) 75, 212, 361, 765
SspMI CTAG 3 cut(s) 341, 495, 904
StuI AGGCCT 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 805
TaaI ACNGT 2 cut(s) 221, 558
TaqI TCGA 1 cut(s) 453
TasI AATT 3 cut(s) 9, 626, 817
TatI WGTACW 2 cut(s) 477, 651
TfiI GAWTC 2 cut(s) 78, 895
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 2 cut(s) 224, 563
TseFI GTSAC 4 cut(s) 37, 215, 221, 667
TseI GCWGC 6 cut(s) 20, 548, 743, 755, 779, 782
Tsp45I GTSAC 4 cut(s) 37, 215, 221, 667
TspDTI ATGAA 2 cut(s) 123, 336
TspRI CASTG 2 cut(s) 224, 563
Vha464I CTTAAG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 849
XagI CCTNNNNNAGG 1 cut(s) 412
XapI RAATTY 1 cut(s) 817
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 2 cut(s) 389, 725
XspI CTAG 3 cut(s) 341, 495, 904
ZrmI AGTACT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.