RchiOBHm_Chr5g0069621

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000601
Physical Location & Seq
Forward (+)
75450710 .. 75451639
930 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34500

Sequence Viewer

Length: 930 bp
ATGGTCACGTCTCCTCTTCTCTCACTCCTTGTCCTAGTCTCATTTCTGGTCCTAGTCCAACCCTCTCACGGTGGTGGCATAGGCATCTACTGGGGACAAAACGGGAACGAAGGTACCCTAAAACAAACCTGCGCCACCGGAACATACAAGAACGTGAACATAGCCTTCCTCAACGTCTTCGGCGGCGGCCAAATACCACAAATCAACCTAGCAGGCCACTGCAACCCAGTCTCAAATGGTTGCGCAGCCGTCGGCCCCGAAGTCACATTCTGCCAGAGCCTAGGAGTCAAGGTGTTCCTCTCCCTCGGCGGCGGAACCGGAAACTACTCTCTATCTTCTGCTTCTGACGCAAAAGATGTAGCCGATTATCTATGGAACAGTTTCCTGGGGGAAAAAGGAAACGGCAGAGACAAGTCTACTACTACACGTCCCTTCGGCGATGCCGTTTTGGATGGGATAGATTTCATCTTATCAGTTGCAAATCCATATTGGGATGACCTTGCACGTTATCTCAAGGCGTATAGCAATCCAAGAAGAGCTGTGTACTTAGCTGCAGCTCCTCAGTGTCCATTTCCCGATGCGTTCGTCGGCGGTGCGATTAGTACGGGGCTTTTTGATTATGTTTGGGTTCAGTTCTACGACAATCCTCCATGCCAGTATAGCTCAGGAAACACTGGCAATATTTTGAACTCGTGGAATGAATGGACTACGTCTATACAAGCAGGGAAGATATTCTTGGGGTTGCCGGCGGCTCCAGCGGCTGCTGGAAGCGGGTTCATTCCGGCTACGGTGCTGATTTCTGAGATACTTCCGGTGATAAAGAAGTCGTCGAAGTATGGTGGCGTGATGTTGTGGTCAAAGCATGATGATGATCAAAGTGGTTATAGTTCCTTCATTATCAAAAATGTATGGCTTTTAGTTTCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

309

Amino Acids

32.87

Weight (kDa)

6.27

Isoelectric Point (pI)

29.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 29 - 251 1.3e-13 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 137
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 416
AciI CCGC 8 cut(s) 183, 186, 309, 312, 591, 749, 758, 771
AcoI YGGCCR 1 cut(s) 187
AfaI GTAC 3 cut(s) 115, 545, 604
AfiI CCNNNNNNNGG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 1 cut(s) 688
AjiI CACGTC 2 cut(s) 9, 428
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 4 cut(s) 539, 551, 557, 663
AluI AGCT 4 cut(s) 539, 551, 557, 663
Alw26I GTCTC 4 cut(s) 15, 43, 235, 402
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 3 cut(s) 187, 214, 253
ApeKI GCWGC 4 cut(s) 245, 551, 554, 761
Asp700I GAANNNNTTC 2 cut(s) 380, 731
Asp718I GGTACC 1 cut(s) 113
AspA2I CCTAGG 1 cut(s) 280
AspLEI GCGC 2 cut(s) 134, 245
AspS9I GGNCC 2 cut(s) 49, 254
AsuHPI GGTGA 1 cut(s) 826
AvaII GGWCC 1 cut(s) 49
AvrII CCTAGG 1 cut(s) 280
BaeI ACNNNNGTAYC 2 cut(s) 97, 130
BanI GGYRCC 1 cut(s) 113
BauI CACGAG 1 cut(s) 691
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 4 cut(s) 257, 538, 566, 748
BccI CCATC 1 cut(s) 446
BceAI ACGGC 3 cut(s) 233, 418, 428
BciT130I CCWGG 1 cut(s) 386
BclI TGATCA 1 cut(s) 871
BcoDI GTCTC 4 cut(s) 15, 43, 235, 402
BfaI CTAG 4 cut(s) 35, 53, 209, 281
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 9 cut(s) 184, 187, 246, 310, 552, 555, 750, 759, 762
BlnI CCTAGG 1 cut(s) 280
BlsI GCNGC 9 cut(s) 185, 188, 247, 311, 553, 556, 751, 760, 763
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 49
BmgBI CACGTC 2 cut(s) 9, 428
BmgT120I GGNCC 2 cut(s) 49, 254
BmiI GGNNCC 4 cut(s) 115, 256, 316, 753
BmrFI CCNGG 1 cut(s) 386
BmrI ACTGGG 2 cut(s) 100, 221
BmsI GCATC 3 cut(s) 93, 430, 568
BmuI ACTGGG 2 cut(s) 100, 221
BpiI GAAGAC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 664
BpuEI CTTGAG 1 cut(s) 497
BsaBI GATNNNNATC 1 cut(s) 870
BsaJI CCNNGG 3 cut(s) 280, 304, 385
BsaWI WCCGGW 3 cut(s) 137, 317, 811
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 745
Bse1I ACTGG 4 cut(s) 95, 227, 655, 679
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 3 cut(s) 280, 304, 385
BseGI GGATG 2 cut(s) 457, 499
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 3 cut(s) 575, 678, 792
BseNI ACTGG 4 cut(s) 95, 227, 655, 679
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 4 cut(s) 257, 538, 566, 748
BshFI GGCC 3 cut(s) 189, 216, 255
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 5 cut(s) 138, 318, 746, 782, 812
BslFI GGGAC 2 cut(s) 108, 414
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 4 cut(s) 15, 43, 235, 402
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 108, 414
BsnI GGCC 3 cut(s) 189, 216, 255
Bsp143I GATC 1 cut(s) 871
BspACI CCGC 8 cut(s) 183, 186, 309, 312, 591, 749, 758, 771
BspANI GGCC 3 cut(s) 189, 216, 255
BspCNI CTCAG 3 cut(s) 574, 677, 793
BspLI GGNNCC 4 cut(s) 115, 256, 316, 753
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 529
BspT107I GGYRCC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 745
BsrI ACTGG 4 cut(s) 95, 227, 655, 679
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 3 cut(s) 280, 304, 385
BssMI GATC 1 cut(s) 871
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 691
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 3 cut(s) 71, 380, 790
Bst6I CTCTTC 2 cut(s) 21, 529
BstC8I GCNNGC 2 cut(s) 214, 747
BstDEI CTNAG 4 cut(s) 547, 561, 664, 801
BstF5I GGATG 2 cut(s) 457, 499
BstHHI GCGC 2 cut(s) 134, 245
BstKTI GATC 1 cut(s) 874
BstMAI GTCTC 4 cut(s) 15, 43, 235, 402
BstMBI GATC 1 cut(s) 871
BstMWI GCNNNNNNNGC 4 cut(s) 347, 660, 755, 758
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 552
BstV1I GCAGC 4 cut(s) 257, 538, 566, 748
BstV2I GAAGAC 1 cut(s) 169
BsuRI GGCC 3 cut(s) 189, 216, 255
BtgZI GCGATG 1 cut(s) 453
BtrI CACGTC 2 cut(s) 9, 428
BtsCI GGATG 2 cut(s) 457, 499
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 3 cut(s) 217, 569, 672
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 214, 747
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 2 cut(s) 134, 245
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 2 cut(s) 49, 254
CseI GACGC 1 cut(s) 356
Csp6I GTAC 3 cut(s) 114, 544, 603
CviAII CATG 2 cut(s) 651, 863
CviQI GTAC 3 cut(s) 114, 544, 603
DdeI CTNAG 4 cut(s) 547, 561, 664, 801
DpnI GATC 1 cut(s) 873
DpnII GATC 1 cut(s) 871
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 21, 529
EarI CTCTTC 2 cut(s) 21, 529
EciI GGCGGA 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 2 cut(s) 654, 866
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FaqI GGGAC 2 cut(s) 108, 414
FatI CATG 2 cut(s) 650, 862
FauI CCCGC 1 cut(s) 764
FbaI TGATCA 1 cut(s) 871
FblI GTMKAC 1 cut(s) 416
Fnu4HI GCNGC 9 cut(s) 184, 187, 246, 310, 552, 555, 750, 759, 762
FokI GGATG 2 cut(s) 464, 506
Fsp4HI GCNGC 9 cut(s) 184, 187, 246, 310, 552, 555, 750, 759, 762
FspBI CTAG 4 cut(s) 35, 53, 209, 281
FspI TGCGCA 1 cut(s) 244
GlaI GCGC 2 cut(s) 133, 244
GluI GCNGC 9 cut(s) 184, 187, 246, 310, 552, 555, 750, 759, 762
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 3 cut(s) 189, 216, 255
HapII CCGG 5 cut(s) 138, 318, 746, 782, 812
HgaI GACGC 1 cut(s) 356
HhaI GCGC 2 cut(s) 134, 245
Hin1II CATG 2 cut(s) 654, 866
Hin6I GCGC 2 cut(s) 132, 243
HinP1I GCGC 2 cut(s) 132, 243
HinfI GANTC 1 cut(s) 285
HpaII CCGG 5 cut(s) 138, 318, 746, 782, 812
HphI GGTGA 1 cut(s) 826
Hpy166II GTNNAC 3 cut(s) 157, 417, 544
Hpy188I TCNGA 2 cut(s) 346, 802
Hpy188III TCNNGA 2 cut(s) 575, 666
Hpy8I GTNNAC 3 cut(s) 157, 417, 544
Hpy99I CGWCG 3 cut(s) 254, 590, 832
HpyAV CCTTC 4 cut(s) 104, 175, 442, 901
HpyCH4III ACNGT 3 cut(s) 71, 380, 790
HpyCH4IV ACGT 6 cut(s) 8, 153, 174, 427, 505, 710
HpyCH4V TGCA 4 cut(s) 222, 479, 503, 554
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 660, 755, 758
HpyF3I CTNAG 4 cut(s) 547, 561, 664, 801
HpySE526I ACGT 6 cut(s) 8, 153, 174, 427, 505, 710
Hsp92II CATG 2 cut(s) 654, 866
HspAI GCGC 2 cut(s) 132, 243
KpnI GGTACC 1 cut(s) 117
KroI GCCGGC 1 cut(s) 745
KroNI GCCGGC 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 871
Kzo9I GATC 1 cut(s) 871
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 2 cut(s) 562, 757
Lsp1109I GCAGC 4 cut(s) 257, 538, 566, 748
LweI GCATC 3 cut(s) 93, 430, 568
MaeI CTAG 4 cut(s) 35, 53, 209, 281
MaeII ACGT 6 cut(s) 8, 153, 174, 427, 505, 710
MaeIII GTNAC 2 cut(s) 4, 262
MalI GATC 1 cut(s) 873
MboI GATC 1 cut(s) 871
MboII GAAGA 5 cut(s) 8, 169, 327, 546, 739
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 7 cut(s) 24, 73, 179, 308, 314, 570, 657
MroNI GCCGGC 1 cut(s) 745
MroXI GAANNNNTTC 2 cut(s) 380, 731
MslI CAYNNNNRTG 2 cut(s) 72, 867
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 5 cut(s) 138, 318, 746, 782, 812
MspR9I CCNGG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 4 cut(s) 347, 660, 755, 758
NaeI GCCGGC 1 cut(s) 747
NdeII GATC 1 cut(s) 871
NgoMIV GCCGGC 1 cut(s) 745
NlaIII CATG 2 cut(s) 654, 866
NlaIV GGNNCC 4 cut(s) 115, 256, 316, 753
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 4, 262
NsbI TGCGCA 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 72
PciSI GCTCTTC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 747
PdmI GAANNNNTTC 2 cut(s) 380, 731
PflFI GACNNNGTC 1 cut(s) 709
PkrI GCNGC 9 cut(s) 185, 188, 247, 311, 553, 556, 751, 760, 763
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 4 cut(s) 115, 256, 316, 753
PspPI GGNCC 2 cut(s) 49, 254
PstI CTGCAG 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 761
PsyI GACNNNGTC 1 cut(s) 709
RsaI GTAC 3 cut(s) 115, 545, 604
RsaNI GTAC 3 cut(s) 114, 544, 603
RseI CAYNNNNRTG 2 cut(s) 72, 867
SapI GCTCTTC 1 cut(s) 529
SatI GCNGC 9 cut(s) 184, 187, 246, 310, 552, 555, 750, 759, 762
Sau3AI GATC 1 cut(s) 871
Sau96I GGNCC 2 cut(s) 49, 254
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 386
SfaNI GCATC 3 cut(s) 93, 430, 568
SfcI CTRYAG 1 cut(s) 552
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 2 cut(s) 72, 867
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
SsiI CCGC 8 cut(s) 183, 186, 309, 312, 591, 749, 758, 771
SspI AATATT 1 cut(s) 682
SspMI CTAG 4 cut(s) 35, 53, 209, 281
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 3 cut(s) 71, 380, 790
TaiI ACGT 6 cut(s) 11, 156, 177, 430, 508, 713
TaqI TCGA 1 cut(s) 830
TatI WGTACW 1 cut(s) 543
TauI GCSGC 5 cut(s) 186, 189, 312, 752, 761
TscAI CASTG 3 cut(s) 224, 569, 679
TseFI GTSAC 2 cut(s) 4, 262
TseI GCWGC 4 cut(s) 245, 551, 554, 761
Tsp45I GTSAC 2 cut(s) 4, 262
TspDTI ATGAA 4 cut(s) 454, 714, 766, 883
TspRI CASTG 3 cut(s) 224, 569, 679
Tth111I GACNNNGTC 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 49
XmaJI CCTAGG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 416
XmnI GAANNNNTTC 2 cut(s) 380, 731
XspI CTAG 4 cut(s) 35, 53, 209, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.