RchiOBHm_Chr2g0156271

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
72958959 .. 72959367
409 bp
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UTR
Exon/CDS
Intron
PRQ52510

Sequence Viewer

Length: 333 bp
ATGCTTATGTTAAATGCACTCAACACAGGCCTCTTCGACTTTGTTTGGGTACAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGCAATATTTCAAATCTCGAAGATGGTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCTCAAGCTGCTGGTAGTGGATTTATTCCTGCGGCTGATCTCAACTCACAAGTCCTTCCGGCTATCAAAAATTCAGCTAAATATGGAGGTGTCATGCTTTGGTTGAAGTATTATGATGATCTCGATGGATACAGCTCCTCCATCAAGAATGATGTCTAG

Protein Analysis

110

Amino Acids

12.08

Weight (kDa)

4.94

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 2 cut(s) 51, 80
AgsI TTSAA 2 cut(s) 99, 280
AluBI AGCT 3 cut(s) 182, 251, 309
AluI AGCT 3 cut(s) 182, 251, 309
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 170, 182
ApoI RAATTY 1 cut(s) 244
BbvI GCAGC 2 cut(s) 157, 169
BccI CCATC 3 cut(s) 104, 293, 323
BciVI GTATCC 1 cut(s) 296
BfaI CTAG 1 cut(s) 331
BfuI GTATCC 1 cut(s) 296
BisI GCNGC 3 cut(s) 171, 183, 207
BlsI GCNGC 3 cut(s) 172, 184, 208
BpuEI CTTGAG 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 128
BseMI GCAATG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 301
BseXI GCAGC 2 cut(s) 157, 169
BsgI GTGCAG 2 cut(s) 126, 156
BshFI GGCC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 233
BsnI GGCC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 211, 292
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 76
BssMI GATC 2 cut(s) 211, 292
Bst6I CTCTTC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 157
BstKTI GATC 2 cut(s) 214, 295
BstMBI GATC 2 cut(s) 211, 292
BstMWI GCNNNNNNNGC 2 cut(s) 140, 179
BstV1I GCAGC 2 cut(s) 157, 169
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 50, 79
CviAII CATG 1 cut(s) 268
CviJI RGCY 6 cut(s) 30, 182, 209, 236, 251, 309
CviKI_1 RGCY 6 cut(s) 30, 182, 209, 236, 251, 309
CviQI GTAC 2 cut(s) 50, 79
DdeI CTNAG 1 cut(s) 157
DpnI GATC 2 cut(s) 213, 294
DpnII GATC 2 cut(s) 211, 292
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco147I AGGCCT 1 cut(s) 30
FaeI CATG 1 cut(s) 271
FaiI YATR 5 cut(s) 8, 147, 258, 269, 288
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 171, 183, 207
Fsp4HI GCNGC 3 cut(s) 171, 183, 207
FspBI CTAG 1 cut(s) 331
GluI GCNGC 3 cut(s) 171, 183, 207
HaeIII GGCC 1 cut(s) 30
HapII CCGG 1 cut(s) 233
Hin1II CATG 1 cut(s) 271
HpaII CCGG 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 81
Hpy188III TCNNGA 3 cut(s) 104, 296, 319
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 17, 143, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 179
HpyF3I CTNAG 1 cut(s) 157
Hsp92II CATG 1 cut(s) 271
Kzo9I GATC 2 cut(s) 211, 292
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 8 cut(s) 12, 72, 89, 153, 171, 180, 216, 246
Lsp1109I GCAGC 2 cut(s) 157, 169
MaeI CTAG 1 cut(s) 331
MalI GATC 2 cut(s) 213, 294
MboI GATC 2 cut(s) 211, 292
MboII GAAGA 2 cut(s) 25, 119
MluCI AATT 2 cut(s) 53, 244
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 5 cut(s) 41, 78, 186, 254, 322
MseI TTAA 1 cut(s) 11
MspI CCGG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 140, 179
NdeII GATC 2 cut(s) 211, 292
NlaIII CATG 1 cut(s) 271
PceI AGGCCT 1 cut(s) 30
PkrI GCNGC 3 cut(s) 172, 184, 208
RsaI GTAC 2 cut(s) 51, 80
RsaNI GTAC 2 cut(s) 50, 79
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 171, 183, 207
Sau3AI GATC 2 cut(s) 211, 292
SetI ASST 5 cut(s) 178, 184, 253, 265, 311
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 53, 244
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 1 cut(s) 206
SspI AATATT 1 cut(s) 94
SspMI CTAG 1 cut(s) 331
StuI AGGCCT 1 cut(s) 30
TaqI TCGA 3 cut(s) 36, 105, 297
TasI AATT 2 cut(s) 53, 244
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseI GCWGC 2 cut(s) 170, 182
XapI RAATTY 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XspI CTAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.