Rw1G038110

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000601
Physical Location & Seq
Reverse (-)
65735274 .. 65736420
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038110.1

Sequence Viewer

Length: 897 bp
ATGGCTTCAATTTTAGTAGCAGCATTGCTATCTTTAGCAACACTACTACTTCTGGCAGTTGGGTCTAATGCAGGCGGAATCGCGATTTACTGGGGCCAAAATGGAAATGAAGGCACATTAGCACAAACATGTGCCTCAGGGAACTACAAGTTTGTAAACATAGCTTTCCTTTCATCATTTGGCAATGGCCGAATCCCTACCATAAACCTTGCGGGTCACTGTGACCCGTACAGCAATGGATGCACCAAGTTCAGCTCGCAAATAAAGTCGTGCCAAGCCAAAGGCATCAAGGTCATACTATCTATTGGAGGTGGTGCTGGAGGCTACTCTCTAGCTTCATCCAGTGATGCCCGCCAATTTGGTGCTTACTTGTGGAACAACTTCTTGGGAGGACACTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTCGACATTGAAGGAGGGAATGACCAGTACTATGATGACCTTGCTAGATACCTTTCGGGGCAGAGCAAGAAGGGCAGCAAGAAAGTTTACTTGACTGCCGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTTGAGACAGGCCTATTTGACTATGTTTGGGTTCAATTTTACAACAACCCTCCTTGTCAGTACACTTCTGGCGATGTCACCAATCTCGAAAACGCTTGGAAGCAATGGACTTCAGCCATTCCTGCACAAAAGATCTTTTTAGGACTCCCTGCTGCACCTCAAGCTGCTGGTAGCGGATTCATTCCTGCTGCTGCTCTCACTTCAAAAGTCCTTCCGGGTATAAAAAATTCGGCTAAATATGGTGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTTGATGGATACAGCTCCTCCATCAAGAATCATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

298

Amino Acids

31.47

Weight (kDa)

7.54

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 27 - 246 2.8e-24 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 542
AccII CGCG 1 cut(s) 83
AciI CCGC 5 cut(s) 75, 212, 352, 540, 756
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 3 cut(s) 230, 470, 644
AfiI CCNNNNNNNGG 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 5 cut(s) 9, 405, 452, 617, 786
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 5 cut(s) 164, 255, 335, 746, 873
AluI AGCT 5 cut(s) 164, 255, 335, 746, 873
Alw26I GTCTC 1 cut(s) 581
AoxI GGCC 4 cut(s) 94, 187, 407, 592
ApeKI GCWGC 6 cut(s) 20, 516, 734, 746, 770, 773
ApoI RAATTY 1 cut(s) 808
Asp700I GAANNNNTTC 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 94, 840
AsuC2I CCSGG 1 cut(s) 798
AsuHPI GGTGA 1 cut(s) 652
AvaII GGWCC 1 cut(s) 840
AxyI CCTNAGG 1 cut(s) 136
BbvI GCAGC 6 cut(s) 32, 528, 721, 733, 757, 760
BccI CCATC 3 cut(s) 425, 857, 887
BceAI ACGGC 1 cut(s) 394
BciVI GTATCC 1 cut(s) 860
BcnI CCSGG 1 cut(s) 798
BcoDI GTCTC 1 cut(s) 581
BfaI CTAG 3 cut(s) 332, 486, 895
BfuI GTATCC 1 cut(s) 860
BglII AGATCT 1 cut(s) 714
BisI GCNGC 7 cut(s) 21, 517, 540, 735, 747, 771, 774
BlsI GCNGC 7 cut(s) 22, 518, 541, 736, 748, 772, 775
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 798
Bme18I GGWCC 1 cut(s) 840
BmgT120I GGNCC 2 cut(s) 94, 840
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 798
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 5 cut(s) 230, 294, 337, 409, 553
BmuI ACTGGG 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 605, 726
BpuMI CCSGG 1 cut(s) 798
BsaXI ACNNNNNCTCC 6 cut(s) 408, 438, 526, 556, 860, 890
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 3 cut(s) 95, 342, 466
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 4 cut(s) 23, 190, 241, 692
BseGI GGATG 3 cut(s) 245, 338, 436
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMI GCAATG 4 cut(s) 23, 190, 241, 692
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 3 cut(s) 95, 342, 466
BseRI GAGGAG 2 cut(s) 388, 865
BseXI GCAGC 6 cut(s) 32, 528, 721, 733, 757, 760
BsgI GTGCAG 2 cut(s) 690, 720
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 4 cut(s) 96, 189, 409, 594
BsiSI CCGG 1 cut(s) 797
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 537
BsnI GGCC 4 cut(s) 96, 189, 409, 594
Bsp143I GATC 2 cut(s) 714, 856
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 5 cut(s) 75, 212, 352, 540, 756
BspANI GGCC 4 cut(s) 96, 189, 409, 594
BspCNI CTCAG 1 cut(s) 149
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 4 cut(s) 23, 190, 241, 692
BsrI ACTGG 3 cut(s) 95, 342, 466
BssMI GATC 2 cut(s) 714, 856
Bst4CI ACNGT 2 cut(s) 221, 549
Bst6I CTCTTC 1 cut(s) 406
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 3 cut(s) 73, 257, 352
BstDEI CTNAG 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 245, 338, 436
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 2 cut(s) 717, 859
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 2 cut(s) 714, 856
BstMWI GCNNNNNNNGC 4 cut(s) 240, 513, 704, 743
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 796
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 6 cut(s) 32, 528, 721, 733, 757, 760
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
Bsu36I CCTNAGG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 860
BsuRI GGCC 4 cut(s) 96, 189, 409, 594
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 3 cut(s) 245, 338, 436
BtsIMutI CAGTG 3 cut(s) 217, 349, 554
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 3 cut(s) 73, 257, 352
Cfr13I GGNCC 2 cut(s) 94, 840
Csp6I GTAC 3 cut(s) 229, 469, 643
CviAII CATG 3 cut(s) 129, 832, 890
CviQI GTAC 3 cut(s) 229, 469, 643
DdeI CTNAG 1 cut(s) 136
DpnI GATC 2 cut(s) 716, 858
DpnII GATC 2 cut(s) 714, 856
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
EciI GGCGGA 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 840
Eco57I CTGAAG 1 cut(s) 678
Eco81I CCTNAGG 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 403
FaeI CATG 3 cut(s) 132, 835, 893
FaqI GGGAC 1 cut(s) 537
FatI CATG 3 cut(s) 128, 831, 889
FauI CCCGC 2 cut(s) 205, 359
Fnu4HI GCNGC 7 cut(s) 21, 517, 540, 735, 747, 771, 774
FokI GGATG 3 cut(s) 252, 325, 443
Fsp4HI GCNGC 7 cut(s) 21, 517, 540, 735, 747, 771, 774
FspBI CTAG 3 cut(s) 332, 486, 895
GluI GCNGC 7 cut(s) 21, 517, 540, 735, 747, 771, 774
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 4 cut(s) 96, 189, 409, 594
HapII CCGG 1 cut(s) 797
Hin1II CATG 3 cut(s) 132, 835, 893
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 5 cut(s) 78, 192, 726, 759, 886
HpaII CCGG 1 cut(s) 797
HphI GGTGA 1 cut(s) 652
Hpy166II GTNNAC 4 cut(s) 157, 439, 529, 645
Hpy188III TCNNGA 5 cut(s) 82, 560, 668, 860, 883
Hpy8I GTNNAC 4 cut(s) 157, 439, 529, 645
HpyAV CCTTC 4 cut(s) 104, 446, 505, 803
HpyCH4III ACNGT 2 cut(s) 221, 549
HpyCH4V TGCA 5 cut(s) 71, 243, 581, 707, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 513, 704, 743
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 3 cut(s) 132, 835, 893
Kzo9I GATC 2 cut(s) 714, 856
LmnI GCTCC 2 cut(s) 547, 878
Lsp1109I GCAGC 6 cut(s) 32, 528, 721, 733, 757, 760
LweI GCATC 5 cut(s) 230, 294, 337, 409, 553
MaeI CTAG 3 cut(s) 332, 486, 895
MaeIII GTNAC 3 cut(s) 215, 221, 658
MalI GATC 2 cut(s) 716, 858
MbiI CCGCTC 1 cut(s) 542
MboI GATC 2 cut(s) 714, 856
MboII GAAGA 1 cut(s) 393
MflI RGATCY 1 cut(s) 714
MluCI AATT 4 cut(s) 9, 356, 617, 808
MlyI GAGTC 1 cut(s) 720
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 9 cut(s) 145, 302, 314, 383, 409, 449, 642, 750, 886
MroXI GAANNNNTTC 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 127
MspI CCGG 1 cut(s) 797
MspR9I CCNGG 1 cut(s) 798
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 240, 513, 704, 743
NciI CCSGG 1 cut(s) 798
NdeII GATC 2 cut(s) 714, 856
NlaIII CATG 3 cut(s) 132, 835, 893
NlaIV GGNNCC 1 cut(s) 95
NmuCI GTSAC 3 cut(s) 215, 221, 658
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 132
PceI AGGCCT 1 cut(s) 594
PciI ACATGT 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 4 cut(s) 78, 192, 759, 886
PkrI GCNGC 7 cut(s) 22, 518, 541, 736, 748, 772, 775
PleI GAGTC 1 cut(s) 720
PpsI GAGTC 1 cut(s) 720
PscI ACATGT 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 2 cut(s) 94, 840
PsuI RGATCY 1 cut(s) 714
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 3 cut(s) 230, 470, 644
RsaNI GTAC 3 cut(s) 229, 469, 643
RseI CAYNNNNRTG 1 cut(s) 127
SatI GCNGC 7 cut(s) 21, 517, 540, 735, 747, 771, 774
Sau3AI GATC 2 cut(s) 714, 856
Sau96I GGNCC 2 cut(s) 94, 840
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 1 cut(s) 798
SfaNI GCATC 5 cut(s) 230, 294, 337, 409, 553
SinI GGWCC 1 cut(s) 840
SmiMI CAYNNNNRTG 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 584, 741
SmoI CTYRAG 2 cut(s) 584, 741
Sse9I AATT 4 cut(s) 9, 356, 617, 808
SseBI AGGCCT 1 cut(s) 594
SsiI CCGC 5 cut(s) 75, 212, 352, 540, 756
SspMI CTAG 3 cut(s) 332, 486, 895
StuI AGGCCT 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 796
TaaI ACNGT 2 cut(s) 221, 549
TaqI TCGA 2 cut(s) 444, 669
TasI AATT 4 cut(s) 9, 356, 617, 808
TatI WGTACW 2 cut(s) 468, 642
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 4 cut(s) 78, 192, 759, 886
TscAI CASTG 3 cut(s) 224, 349, 554
TseFI GTSAC 3 cut(s) 215, 221, 658
TseI GCWGC 6 cut(s) 20, 516, 734, 746, 770, 773
Tsp45I GTSAC 3 cut(s) 215, 221, 658
TspDTI ATGAA 4 cut(s) 123, 162, 327, 751
TspRI CASTG 3 cut(s) 224, 349, 554
VpaK11BI GGWCC 1 cut(s) 840
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 3 cut(s) 332, 486, 895
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.