Rmu_co8335173.1_g000001

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8335173.1
OG0000601
Physical Location & Seq
Forward (+)
1 .. 890
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8335173.1_g000001.1.cds

Sequence Viewer

Length: 833 bp
ccatctactggggccaaaacgggaacgaaggtaccctaaaacaaacctgcgccaccggaaaatacaagtacgtgaacatagccttcctcaacgtcttcggcagcggccaaacaccacaaatcaacctagcaggccactgcaacccagtctcaaatggttgcgccaccgtcggccccgaagtcacattctgtcagagcctaggagtcaaggtgttcctctccctcggcggcggaatcggaaactactctctatcttctgtttctgacgcaaaatatgtagccaattatctatggaacagtttcctggggggaaaaggaaacggcagagacaagtcaactactacacgtcccttcggcgacgccgttttggatgggatagatttcgacatagagcaaggtgcaaatccatattgggatgaccttgcacgttatctcaaggcgtatagcaaaccaagaagagctgtgtacttagctgcagctcctcagtgtccatttcccgatgcgttcgtcggcggtgcgattagtacagggcttttcgactatgtttgggttcagttctacaacaatcctccatgccagtatagctcaggtaacactgacaatattctaaactcgtggaataaatggactacgtctatccaagcagggaagatattcctggggttgccggcggctccagcggcggctggaagtgggttcattccggctacggtgctgaattctaagatacttccggtgataaagaagtcgtcgaagtatggtggagtgatgttgtggtcaaagtattatgatgatcaaagtggttatagttcctccattatcaaaaatgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

276

Amino Acids

29.69

Weight (kDa)

8.89

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
Acc65I GGTACC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 31
AccB7I CCANNNNNTGG 1 cut(s) 8
AciI CCGC 7 cut(s) 104, 227, 230, 512, 670, 679, 682
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 4 cut(s) 33, 70, 466, 525
AfiI CCNNNNNNNGG 1 cut(s) 8
AflIII ACRYGT 1 cut(s) 343
AjiI CACGTC 1 cut(s) 346
AjnI CCWGG 2 cut(s) 302, 656
AluBI AGCT 4 cut(s) 460, 472, 478, 584
AluI AGCT 4 cut(s) 460, 472, 478, 584
Alw26I GTCTC 2 cut(s) 153, 320
AoxI GGCC 4 cut(s) 12, 105, 132, 171
ApeKI GCWGC 3 cut(s) 101, 472, 475
ApoI RAATTY 1 cut(s) 717
Asp700I GAANNNNTTC 2 cut(s) 298, 652
Asp718I GGTACC 1 cut(s) 31
AspA2I CCTAGG 1 cut(s) 198
AspLEI GCGC 2 cut(s) 52, 163
AspS9I GGNCC 2 cut(s) 12, 172
AsuHPI GGTGA 1 cut(s) 747
AvrII CCTAGG 1 cut(s) 198
BaeI ACNNNNGTAYC 2 cut(s) 15, 48
BanI GGYRCC 1 cut(s) 31
BauI CACGAG 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 113, 459, 487
BccI CCATC 2 cut(s) 10, 364
BceAI ACGGC 2 cut(s) 336, 346
BciT130I CCWGG 2 cut(s) 304, 658
BclI TGATCA 1 cut(s) 792
BcoDI GTCTC 2 cut(s) 153, 320
BfaI CTAG 2 cut(s) 127, 199
BfmI CTRYAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 8 cut(s) 102, 105, 228, 473, 476, 671, 680, 683
BlnI CCTAGG 1 cut(s) 198
BlsI GCNGC 8 cut(s) 103, 106, 229, 474, 477, 672, 681, 684
Bme1390I CCNGG 2 cut(s) 304, 658
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 12, 172
BmiI GGNNCC 4 cut(s) 13, 33, 174, 674
BmrFI CCNGG 2 cut(s) 304, 658
BmrI ACTGGG 2 cut(s) 18, 139
BmsI GCATC 1 cut(s) 489
BmuI ACTGGG 2 cut(s) 18, 139
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 659
Bpu10I CCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 418
BsaAI YACGTR 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 4 cut(s) 198, 222, 303, 657
BsaWI WCCGGW 2 cut(s) 55, 732
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 8
Bse118I RCCGGY 1 cut(s) 666
Bse1I ACTGG 3 cut(s) 13, 145, 576
BseBI CCWGG 2 cut(s) 304, 658
BseDI CCNNGG 4 cut(s) 198, 222, 303, 657
BseGI GGATG 2 cut(s) 375, 420
BseLI CCNNNNNNNGG 1 cut(s) 8
BseMII CTCAG 2 cut(s) 496, 599
BseNI ACTGG 3 cut(s) 13, 145, 576
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 3 cut(s) 113, 459, 487
BshFI GGCC 4 cut(s) 14, 107, 134, 173
BshNI GGYRCC 1 cut(s) 31
BsiSI CCGG 4 cut(s) 56, 667, 703, 733
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 8
BsmAI GTCTC 2 cut(s) 153, 320
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 4 cut(s) 14, 107, 134, 173
Bsp143I GATC 1 cut(s) 792
BspACI CCGC 7 cut(s) 104, 227, 230, 512, 670, 679, 682
BspANI GGCC 4 cut(s) 14, 107, 134, 173
BspCNI CTCAG 2 cut(s) 495, 598
BspLI GGNNCC 4 cut(s) 13, 33, 174, 674
BspMAI CTGCAG 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 55
BspQI GCTCTTC 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 666
BsrI ACTGG 3 cut(s) 13, 145, 576
BssAI RCCGGY 1 cut(s) 666
BssECI CCNNGG 4 cut(s) 198, 222, 303, 657
BssMI GATC 1 cut(s) 792
BssNI GRCGYC 1 cut(s) 359
BssSI CACGAG 1 cut(s) 612
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 2 cut(s) 304, 658
Bst4CI ACNGT 3 cut(s) 168, 298, 711
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 132, 668
BstDEI CTNAG 4 cut(s) 468, 482, 585, 722
BstF5I GGATG 2 cut(s) 375, 420
BstHHI GCGC 2 cut(s) 52, 163
BstKTI GATC 1 cut(s) 795
BstMAI GTCTC 2 cut(s) 153, 320
BstMBI GATC 1 cut(s) 792
BstMWI GCNNNNNNNGC 3 cut(s) 581, 676, 679
BstNI CCWGG 2 cut(s) 304, 658
BstSCI CCNGG 2 cut(s) 302, 656
BstSFI CTRYAG 1 cut(s) 473
BstV1I GCAGC 3 cut(s) 113, 459, 487
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 4 cut(s) 14, 107, 134, 173
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 2 cut(s) 375, 420
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 135, 490, 593
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 132, 668
CfoI GCGC 2 cut(s) 52, 163
Cfr10I RCCGGY 1 cut(s) 666
Cfr13I GGNCC 2 cut(s) 12, 172
CseI GACGC 2 cut(s) 274, 367
Csp6I GTAC 4 cut(s) 32, 69, 465, 524
CviAII CATG 1 cut(s) 572
CviQI GTAC 4 cut(s) 32, 69, 465, 524
DdeI CTNAG 4 cut(s) 468, 482, 585, 722
DpnI GATC 1 cut(s) 794
DpnII GATC 1 cut(s) 792
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 717
EcoRII CCWGG 2 cut(s) 302, 656
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 575
FaqI GGGAC 1 cut(s) 332
FatI CATG 1 cut(s) 571
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 8 cut(s) 102, 105, 228, 473, 476, 671, 680, 683
FokI GGATG 2 cut(s) 382, 427
Fsp4HI GCNGC 8 cut(s) 102, 105, 228, 473, 476, 671, 680, 683
FspBI CTAG 2 cut(s) 127, 199
GlaI GCGC 2 cut(s) 51, 162
GluI GCNGC 8 cut(s) 102, 105, 228, 473, 476, 671, 680, 683
GsuI CTGGAG 1 cut(s) 659
HaeIII GGCC 4 cut(s) 14, 107, 134, 173
HapII CCGG 4 cut(s) 56, 667, 703, 733
HgaI GACGC 2 cut(s) 274, 367
HhaI GCGC 2 cut(s) 52, 163
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 1 cut(s) 575
Hin6I GCGC 2 cut(s) 50, 161
HinP1I GCGC 2 cut(s) 50, 161
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HinfI GANTC 2 cut(s) 203, 233
HpaII CCGG 4 cut(s) 56, 667, 703, 733
HphI GGTGA 1 cut(s) 747
Hpy166II GTNNAC 3 cut(s) 75, 335, 465
Hpy188I TCNGA 3 cut(s) 194, 238, 264
Hpy188III TCNNGA 1 cut(s) 496
Hpy8I GTNNAC 3 cut(s) 75, 335, 465
Hpy99I CGWCG 4 cut(s) 172, 361, 511, 753
HpyAV CCTTC 3 cut(s) 22, 93, 360
HpyCH4III ACNGT 3 cut(s) 168, 298, 711
HpyCH4IV ACGT 5 cut(s) 71, 92, 345, 426, 631
HpyCH4V TGCA 4 cut(s) 140, 400, 424, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 581, 676, 679
HpyF3I CTNAG 4 cut(s) 468, 482, 585, 722
HpySE526I ACGT 5 cut(s) 71, 92, 345, 426, 631
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 1 cut(s) 575
HspAI GCGC 2 cut(s) 50, 161
KpnI GGTACC 1 cut(s) 35
KroI GCCGGC 1 cut(s) 666
KroNI GCCGGC 1 cut(s) 668
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 1 cut(s) 792
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 483, 678
Lsp1109I GCAGC 3 cut(s) 113, 459, 487
LweI GCATC 1 cut(s) 489
MaeI CTAG 2 cut(s) 127, 199
MaeII ACGT 5 cut(s) 71, 92, 345, 426, 631
MaeIII GTNAC 2 cut(s) 180, 589
MalI GATC 1 cut(s) 794
MboI GATC 1 cut(s) 792
MboII GAAGA 4 cut(s) 87, 245, 467, 660
MluCI AATT 2 cut(s) 282, 717
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 6 cut(s) 97, 226, 232, 491, 578, 822
MroNI GCCGGC 1 cut(s) 666
MroXI GAANNNNTTC 2 cut(s) 298, 652
MspA1I CMGCKG 2 cut(s) 104, 679
MspI CCGG 4 cut(s) 56, 667, 703, 733
MspR9I CCNGG 2 cut(s) 304, 658
MvaI CCWGG 2 cut(s) 304, 658
MwoI GCNNNNNNNGC 3 cut(s) 581, 676, 679
NaeI GCCGGC 1 cut(s) 668
NdeII GATC 1 cut(s) 792
NgoMIV GCCGGC 1 cut(s) 666
NlaIII CATG 1 cut(s) 575
NlaIV GGNNCC 4 cut(s) 13, 33, 174, 674
NmeAIII GCCGAG 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PdiI GCCGGC 1 cut(s) 668
PdmI GAANNNNTTC 2 cut(s) 298, 652
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 630
PflMI CCANNNNNTGG 1 cut(s) 8
PkrI GCNGC 8 cut(s) 103, 106, 229, 474, 477, 672, 681, 684
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 302, 656
PspGI CCWGG 2 cut(s) 302, 656
PspN4I GGNNCC 4 cut(s) 13, 33, 174, 674
PspPI GGNCC 2 cut(s) 12, 172
PstI CTGCAG 1 cut(s) 477
PsyI GACNNNGTC 1 cut(s) 630
RsaI GTAC 4 cut(s) 33, 70, 466, 525
RsaNI GTAC 4 cut(s) 32, 69, 465, 524
SapI GCTCTTC 1 cut(s) 450
SatI GCNGC 8 cut(s) 102, 105, 228, 473, 476, 671, 680, 683
Sau3AI GATC 1 cut(s) 792
Sau96I GGNCC 2 cut(s) 12, 172
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 304, 658
SfaNI GCATC 1 cut(s) 489
SfcI CTRYAG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 2 cut(s) 282, 717
SsiI CCGC 7 cut(s) 104, 227, 230, 512, 670, 679, 682
SspI AATATT 1 cut(s) 603
SspMI CTAG 2 cut(s) 127, 199
StyD4I CCNGG 2 cut(s) 302, 656
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 3 cut(s) 168, 298, 711
TaiI ACGT 5 cut(s) 74, 95, 348, 429, 634
TaqI TCGA 3 cut(s) 383, 536, 751
TasI AATT 2 cut(s) 282, 717
TatI WGTACW 2 cut(s) 464, 523
TauI GCSGC 5 cut(s) 107, 230, 673, 682, 685
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 3 cut(s) 142, 490, 600
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 3 cut(s) 101, 472, 475
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 687
TspRI CASTG 3 cut(s) 142, 490, 600
Tth111I GACNNNGTC 1 cut(s) 630
Van91I CCANNNNNTGG 1 cut(s) 8
XapI RAATTY 1 cut(s) 717
XmaJI CCTAGG 1 cut(s) 198
XmnI GAANNNNTTC 2 cut(s) 298, 652
XspI CTAG 2 cut(s) 127, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.