Prupe.2G305100_v2.0.a1

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000601
Physical Location & Seq
Reverse (-)
29097018 .. 29097951
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G305100.1

Sequence Viewer

Length: 903 bp
ATGGCTAGAAATTCCCAAACTCCACTTCTCCTCCTTGTCCTTTCTGCACAACTGGTTCTAATCAGGCTCTGTCATGCCAGCGGCGTCGCCGTCTACTGGGGCCAAAACGGGAACGAAGGTACTCTAGCTGAAACCTGCGCCACCGGAAAGTACAAGTACGTGAATATAGCCTTCCTCAACAAATTTGGCAACGGCCAAACCCCCGAAATCAACCTTGCAGGCCACTGCAACCCTGCATCCAATGGTTGCACAATTGTCAGCAGTGACATAACAAGTTGCCAAAGCCAAGGAGTCAAGGTGTTGCTGTCTTTAGGAGGTGGAATTGGAAACTACTCTCTAGCATCACCTGCAGATGCTAGAGCTGTAGCAGATTATCTGTGGCACAATTTCTTGGGCGGGAAGAAGTCAACTTCGCGTCCCTTAGGAGATGCCGTTTTGGACGGTATTGATTTTGACATAGAGCTTGGTTCAACTCAGTATTGGGATGTGCTTGCAAGAAGCCTCAAGGCATATAGCAAGCCAAGAAGAGCTGTGTATTTAGCAGGAGCACCTCAATGCCCATTTCCTGATAAGTTTCTCGGGGGTGCTCTGAATACAGGGCTCTTTGACTATGTTTGGGTTCAGTTCTATAACAATCCTCAATGTCAATATAGCTCAGGTAACACTGATAACCTCATTAACTCGTGGAACAAATGGACCACGTCGATAAAGGCAGGGCTGATATTTTTGGGGTTGCCTGCGGCTCCTGAGGCAGCCGGAAGCGGGTTTATTCCGGCTACGGTGCTGAATTCTGAAGTCCTTCCGGTGATAAAGAAGTCACCAAAGTATGGTGGTGTGATGTTATGGTCCAAGTTCTATGATGATCAAAGTGGATACAGTTCTTCCATTATTGAAAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

301

Amino Acids

32.17

Weight (kDa)

8.08

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 2 cut(s) 143, 355
AccB7I CCANNNNNTGG 1 cut(s) 827
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 415
AciI CCGC 4 cut(s) 81, 396, 740, 762
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 3 cut(s) 10, 182, 787
AcuI CTGAAG 1 cut(s) 813
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 3 cut(s) 121, 152, 158
AfiI CCNNNNNNNGG 3 cut(s) 96, 762, 827
AgsI TTSAA 2 cut(s) 471, 893
AjiI CACGTC 1 cut(s) 702
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 5 cut(s) 128, 362, 463, 530, 654
AluI AGCT 5 cut(s) 128, 362, 463, 530, 654
Alw21I GWGCWC 2 cut(s) 550, 589
AlwNI CAGNNNCTG 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 3 cut(s) 100, 193, 220
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 3 cut(s) 10, 182, 787
Asp700I GAANNNNTTC 1 cut(s) 798
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 3 cut(s) 100, 696, 846
AsuHPI GGTGA 3 cut(s) 336, 810, 817
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 2 cut(s) 696, 846
AxyI CCTNAGG 2 cut(s) 421, 747
BanII GRGCYC 1 cut(s) 603
BauI CACGAG 1 cut(s) 682
Bbv12I GWGCWC 2 cut(s) 550, 589
BbvI GCAGC 1 cut(s) 764
BceAI ACGGC 3 cut(s) 74, 208, 416
BciVI GTATCC 1 cut(s) 866
BclI TGATCA 1 cut(s) 862
BfaI CTAG 4 cut(s) 6, 125, 338, 357
BfmI CTRYAG 2 cut(s) 348, 363
BfuAI ACCTGC 2 cut(s) 143, 355
BfuI GTATCC 1 cut(s) 866
BisI GCNGC 3 cut(s) 82, 741, 753
BlsI GCNGC 3 cut(s) 83, 742, 754
Bme18I GGWCC 2 cut(s) 696, 846
BmeT110I CYCGRG 1 cut(s) 578
BmgBI CACGTC 1 cut(s) 702
BmgT120I GGNCC 3 cut(s) 100, 696, 846
BmiI GGNNCC 2 cut(s) 101, 744
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 4 cut(s) 245, 343, 350, 418
BmuI ACTGGG 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 655
BpuEI CTTGAG 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 286
BsaWI WCCGGW 2 cut(s) 143, 802
BsaXI ACNNNNNCTCC 6 cut(s) 15, 45, 282, 312, 417, 447
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 762, 827
Bse1I ACTGG 2 cut(s) 57, 101
Bse21I CCTNAGG 2 cut(s) 421, 747
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 236, 490
BseLI CCNNNNNNNGG 3 cut(s) 96, 762, 827
BseMII CTCAG 3 cut(s) 488, 669, 738
BseNI ACTGG 2 cut(s) 57, 101
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 764
BsgI GTGCAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 415
BshFI GGCC 3 cut(s) 102, 195, 222
BsiHKAI GWGCWC 2 cut(s) 550, 589
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 4 cut(s) 144, 756, 773, 803
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 3 cut(s) 96, 762, 827
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 3 cut(s) 102, 195, 222
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 3 cut(s) 550, 589, 603
Bsp143I GATC 1 cut(s) 862
BspACI CCGC 4 cut(s) 81, 396, 740, 762
BspANI GGCC 3 cut(s) 102, 195, 222
BspCNI CTCAG 3 cut(s) 487, 668, 739
BspFNI CGCG 1 cut(s) 415
BspLI GGNNCC 2 cut(s) 101, 744
BspMAI CTGCAG 1 cut(s) 352
BspMI ACCTGC 2 cut(s) 143, 355
BspQI GCTCTTC 1 cut(s) 520
BsrI ACTGG 2 cut(s) 57, 101
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 1 cut(s) 862
BssNI GRCGYC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 682
BssT1I CCWWGG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 682
Bst4CI ACNGT 3 cut(s) 443, 781, 878
Bst6I CTCTTC 1 cut(s) 520
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 5 cut(s) 79, 220, 492, 518, 738
BstDEI CTNAG 4 cut(s) 421, 474, 655, 747
BstF5I GGATG 2 cut(s) 236, 490
BstFNI CGCG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 865
BstMBI GATC 1 cut(s) 862
BstMWI GCNNNNNNNGC 2 cut(s) 347, 749
BstSFI CTRYAG 2 cut(s) 348, 363
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 764
Bsu36I CCTNAGG 2 cut(s) 421, 747
BsuI GTATCC 1 cut(s) 866
BsuRI GGCC 3 cut(s) 102, 195, 222
BtrI CACGTC 1 cut(s) 702
BtsCI GGATG 2 cut(s) 236, 490
BtsI GCAGTG 2 cut(s) 223, 268
BtsIMutI CAGTG 3 cut(s) 223, 268, 663
BveI ACCTGC 2 cut(s) 143, 355
Cac8I GCNNGC 5 cut(s) 79, 220, 492, 518, 738
CaiI CAGNNNCTG 1 cut(s) 69
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 100, 696, 846
CseI GACGC 2 cut(s) 73, 404
Csp6I GTAC 3 cut(s) 120, 151, 157
CviAII CATG 1 cut(s) 74
CviQI GTAC 3 cut(s) 120, 151, 157
DdeI CTNAG 4 cut(s) 421, 474, 655, 747
DpnI GATC 1 cut(s) 864
DpnII GATC 1 cut(s) 862
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 520
EarI CTCTTC 1 cut(s) 520
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 603
Eco47I GGWCC 2 cut(s) 696, 846
Eco57I CTGAAG 1 cut(s) 813
Eco81I CCTNAGG 2 cut(s) 421, 747
Eco88I CYCGRG 1 cut(s) 578
EcoRI GAATTC 1 cut(s) 787
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 77
FaqI GGGAC 1 cut(s) 402
FatI CATG 1 cut(s) 73
FauI CCCGC 2 cut(s) 389, 755
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 82, 741, 753
FokI GGATG 2 cut(s) 223, 497
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 3 cut(s) 82, 741, 753
FspBI CTAG 4 cut(s) 6, 125, 338, 357
GlaI GCGC 1 cut(s) 139
GluI GCNGC 3 cut(s) 82, 741, 753
HaeIII GGCC 3 cut(s) 102, 195, 222
HapII CCGG 4 cut(s) 144, 756, 773, 803
HgaI GACGC 2 cut(s) 73, 404
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 1 cut(s) 291
HpaII CCGG 4 cut(s) 144, 756, 773, 803
HphI GGTGA 3 cut(s) 336, 810, 817
Hpy166II GTNNAC 2 cut(s) 94, 408
Hpy188I TCNGA 2 cut(s) 591, 793
Hpy188III TCNNGA 2 cut(s) 566, 746
Hpy8I GTNNAC 2 cut(s) 94, 408
Hpy99I CGWCG 2 cut(s) 89, 706
HpyAV CCTTC 3 cut(s) 110, 181, 809
HpyCH4III ACNGT 3 cut(s) 443, 781, 878
HpyCH4IV ACGT 2 cut(s) 159, 701
HpyCH4V TGCA 7 cut(s) 47, 218, 228, 236, 249, 350, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 749
HpyF3I CTNAG 4 cut(s) 421, 474, 655, 747
HpySE526I ACGT 2 cut(s) 159, 701
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 1 cut(s) 862
LguI GCTCTTC 1 cut(s) 520
LmnI GCTCC 2 cut(s) 545, 748
Lsp1109I GCAGC 1 cut(s) 764
LweI GCATC 4 cut(s) 245, 343, 350, 418
MaeI CTAG 4 cut(s) 6, 125, 338, 357
MaeII ACGT 2 cut(s) 159, 701
MaeIII GTNAC 3 cut(s) 263, 659, 816
MalI GATC 1 cut(s) 864
MboI GATC 1 cut(s) 862
MboII GAAGA 3 cut(s) 412, 537, 873
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 3 cut(s) 550, 589, 603
MluCI AATT 6 cut(s) 10, 182, 252, 321, 385, 787
MlyI GAGTC 1 cut(s) 300
MnlI CCTC 8 cut(s) 41, 185, 308, 512, 561, 648, 683, 742
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 1 cut(s) 678
MslI CAYNNNNRTG 1 cut(s) 553
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 4 cut(s) 144, 756, 773, 803
MunI CAATTG 1 cut(s) 252
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 2 cut(s) 347, 749
NdeII GATC 1 cut(s) 862
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 2 cut(s) 101, 744
NmuCI GTSAC 2 cut(s) 263, 816
PaqCI CACCTGC 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 798
PflFI GACNNNGTC 1 cut(s) 700
PflMI CCANNNNNTGG 1 cut(s) 827
PkrI GCNGC 3 cut(s) 83, 742, 754
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 101, 744
PspPI GGNCC 3 cut(s) 100, 696, 846
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 69
PsyI GACNNNGTC 1 cut(s) 700
RsaI GTAC 3 cut(s) 121, 152, 158
RsaNI GTAC 3 cut(s) 120, 151, 157
RseI CAYNNNNRTG 1 cut(s) 553
SapI GCTCTTC 1 cut(s) 520
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 3 cut(s) 82, 741, 753
Sau3AI GATC 1 cut(s) 862
Sau96I GGNCC 3 cut(s) 100, 696, 846
SchI GAGTC 1 cut(s) 300
SduI GDGCHC 3 cut(s) 550, 589, 603
SfaNI GCATC 4 cut(s) 245, 343, 350, 418
SfcI CTRYAG 2 cut(s) 348, 363
SinI GGWCC 2 cut(s) 696, 846
SmiMI CAYNNNNRTG 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 6 cut(s) 10, 182, 252, 321, 385, 787
SsiI CCGC 4 cut(s) 81, 396, 740, 762
SspMI CTAG 4 cut(s) 6, 125, 338, 357
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 3 cut(s) 443, 781, 878
TaiI ACGT 2 cut(s) 162, 704
TaqI TCGA 1 cut(s) 704
TasI AATT 6 cut(s) 10, 182, 252, 321, 385, 787
TatI WGTACW 1 cut(s) 150
TauI GCSGC 2 cut(s) 84, 743
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 3 cut(s) 230, 268, 670
TseFI GTSAC 2 cut(s) 263, 816
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 2 cut(s) 263, 816
TspRI CASTG 3 cut(s) 230, 268, 670
Tth111I GACNNNGTC 1 cut(s) 700
Van91I CCANNNNNTGG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 696, 846
XapI RAATTY 3 cut(s) 10, 182, 787
XmiI GTMKAC 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 4 cut(s) 6, 125, 338, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.