Rorug01G0414900

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
51851355 .. 51852608
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0414900.1

Sequence Viewer

Length: 777 bp
ATGGCTTCCATTGCCATTTCTTCTTCATTGCAAATAGTGTGTGGCTCTGGTTCACAACATGTAACCAAGAAACAACAGCCCCAGGCCAGACCGGCTCGCGCTCTGGGGACTAAAGGGGCCACCAATGTTGTTTCTCTCAATGTTGAAGCGCAGAATGGTTTCAAATTAGCAGAACAGGAGAAGTCCACTTCCCCTGTAGATAGGCCAGACGCAGAGGGTGGTGCTGACTATAAATCGAAGCACGCTTTGGATACAGAATCTTCTGCTGTCAAATTCAGTGATGAGAGGTGGAAGAAGGGCACATGGGATTTGAATATGTTCACCAAAGATGGCAAGATGGACTGGGATGGTATCATTGTAGCAGAAGCAAAGAGGAGGAAATTTCTCGAACTTCATCCAGAAGCTTCTACCAACGACGATCCAGTACTGTTTAGGACCTCCCTCGTTCCTTGGTGGGCATGGATAAAGAAATCACATCTCCCAGAGGCTGAGCTGCTCAACGGTCGAGCAGCAATGGTTGGGTTCTTCATGGCATATGTTGTAGATGCTTTGACTGGGGTTGGCGTAGTCGGACAAACCGGTAACTTCATATGCAAGGCAGGTCTCTTGGCGACAGTGATTGGTATAATACTGTTCAGGCGGACGGAAGATTTCGACAACCTTAAGAAGCTAGCTGATGAGGCTACTTTCTATGATAAGCAATGGCAATCTTCTTGGCAAGAACAAAATCAAAATGCAACAAGTGGCTCTACAGAGAAAACTGGAAACAAGAGTTAA
Functional Annotation

Protein Analysis

258

Amino Acids

28.39

Weight (kDa)

7.73

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 590
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 640
AclWI GGATC 1 cut(s) 413
AcsI RAATTY 2 cut(s) 272, 380
AfaI GTAC 1 cut(s) 426
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 58
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 3 cut(s) 146, 163, 313
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 4 cut(s) 404, 493, 670, 674
AluI AGCT 4 cut(s) 404, 493, 670, 674
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 1 cut(s) 413
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 3 cut(s) 84, 117, 203
ApeKI GCWGC 2 cut(s) 493, 509
ApoI RAATTY 2 cut(s) 272, 380
AsiGI ACCGGT 1 cut(s) 578
Asp700I GAANNNNTTC 2 cut(s) 158, 317
AspLEI GCGC 2 cut(s) 101, 151
AspS9I GGNCC 2 cut(s) 117, 435
AsuHPI GGTGA 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 670
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 480, 521
BccI CCATC 3 cut(s) 323, 331, 341
BciT130I CCWGG 1 cut(s) 83
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 1 cut(s) 671
BfmI CTRYAG 2 cut(s) 195, 750
BfrI CTTAAG 1 cut(s) 662
BfuAI ACCTGC 1 cut(s) 590
BfuI GTATCC 1 cut(s) 244
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 2 cut(s) 494, 510
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 2 cut(s) 495, 511
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 117, 435
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 2 cut(s) 352, 564
BmsI GCATC 1 cut(s) 535
BmtI GCTAGC 1 cut(s) 674
BmuI ACTGGG 2 cut(s) 352, 564
Bpu1102I GCTNAGC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 2 cut(s) 81, 449
BsaWI WCCGGW 1 cut(s) 578
Bse118I RCCGGY 2 cut(s) 91, 578
Bse1I ACTGG 4 cut(s) 347, 422, 559, 766
Bse3DI GCAATG 4 cut(s) 9, 26, 519, 707
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 81, 449
BseGI GGATG 2 cut(s) 352, 394
BseMI GCAATG 4 cut(s) 9, 26, 519, 707
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 4 cut(s) 347, 422, 559, 766
BseRI GAGGAG 1 cut(s) 388
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 2 cut(s) 480, 521
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 505
BshFI GGCC 3 cut(s) 86, 119, 205
BshTI ACCGGT 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 505
BsiSI CCGG 2 cut(s) 92, 579
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 86, 119, 205
Bso31I GGTCTC 1 cut(s) 608
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 418
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 1 cut(s) 640
BspANI GGCC 3 cut(s) 86, 119, 205
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 590
BspOI GCTAGC 1 cut(s) 674
BspPI GGATC 1 cut(s) 413
BspTI CTTAAG 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 608
BsrDI GCAATG 4 cut(s) 9, 26, 519, 707
BsrFI RCCGGY 2 cut(s) 91, 578
BsrI ACTGG 4 cut(s) 347, 422, 559, 766
BssAI RCCGGY 2 cut(s) 91, 578
BssECI CCNNGG 2 cut(s) 81, 449
BssMI GATC 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 4 cut(s) 429, 503, 616, 633
BstAFI CTTAAG 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 97, 243, 672
BstDEI CTNAG 1 cut(s) 489
BstF5I GGATG 2 cut(s) 352, 394
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 2 cut(s) 101, 151
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 1 cut(s) 418
BstMCI CGRYCG 1 cut(s) 505
BstMWI GCNNNNNNNGC 3 cut(s) 11, 92, 680
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 2 cut(s) 195, 750
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 480, 521
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 3 cut(s) 86, 119, 205
BtsCI GGATG 2 cut(s) 352, 394
BtsIMutI CAGTG 2 cut(s) 283, 621
BveI ACCTGC 1 cut(s) 590
Cac8I GCNNGC 3 cut(s) 97, 243, 672
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 2 cut(s) 101, 151
Cfr10I RCCGGY 2 cut(s) 91, 578
Cfr13I GGNCC 2 cut(s) 117, 435
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 425
CspAI ACCGGT 1 cut(s) 578
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 4 cut(s) 59, 303, 459, 529
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 1 cut(s) 489
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
EciI GGCGGA 1 cut(s) 655
Eco130I CCWWGG 1 cut(s) 449
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 4 cut(s) 62, 306, 462, 532
FaqI GGGAC 1 cut(s) 121
FatI CATG 4 cut(s) 58, 302, 458, 528
FauNDI CATATG 2 cut(s) 535, 590
Fnu4HI GCNGC 2 cut(s) 494, 510
FokI GGATG 2 cut(s) 359, 381
Fsp4HI GCNGC 2 cut(s) 494, 510
FspBI CTAG 1 cut(s) 671
GlaI GCGC 2 cut(s) 100, 150
GluI GCNGC 2 cut(s) 494, 510
HaeIII GGCC 3 cut(s) 86, 119, 205
HapII CCGG 2 cut(s) 92, 579
HgaI GACGC 1 cut(s) 218
HhaI GCGC 2 cut(s) 101, 151
Hin1II CATG 4 cut(s) 62, 306, 462, 532
Hin6I GCGC 2 cut(s) 99, 149
HinP1I GCGC 2 cut(s) 99, 149
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 1 cut(s) 257
HpaII CCGG 2 cut(s) 92, 579
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 53, 186, 321
Hpy188I TCNGA 1 cut(s) 572
Hpy188III TCNNGA 2 cut(s) 386, 398
Hpy8I GTNNAC 3 cut(s) 53, 186, 321
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 4 cut(s) 429, 503, 616, 633
HpyCH4V TGCA 3 cut(s) 31, 594, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 92, 680
HpyF3I CTNAG 1 cut(s) 489
Hsp92II CATG 4 cut(s) 62, 306, 462, 532
HspAI GCGC 2 cut(s) 99, 149
Kzo9I GATC 1 cut(s) 418
Lsp1109I GCAGC 2 cut(s) 480, 521
LweI GCATC 1 cut(s) 535
MaeI CTAG 1 cut(s) 671
MaeIII GTNAC 2 cut(s) 61, 581
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 7 cut(s) 12, 15, 252, 304, 517, 659, 702
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 3 cut(s) 164, 272, 380
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 8 cut(s) 208, 279, 366, 369, 448, 452, 478, 673
MroXI GAANNNNTTC 2 cut(s) 158, 317
MseI TTAA 2 cut(s) 663, 775
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 2 cut(s) 92, 579
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 11, 92, 680
NdeI CATATG 2 cut(s) 535, 590
NdeII GATC 1 cut(s) 418
NheI GCTAGC 1 cut(s) 670
NlaIII CATG 4 cut(s) 62, 306, 462, 532
NlaIV GGNNCC 1 cut(s) 118
NspI RCATGY 1 cut(s) 62
PciI ACATGT 1 cut(s) 58
PdmI GAANNNNTTC 2 cut(s) 158, 317
PfeI GAWTC 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 2 cut(s) 495, 511
PpuMI RGGWCCY 1 cut(s) 435
PscI ACATGT 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 117, 435
PspPPI RGGWCCY 1 cut(s) 435
PstNI CAGNNNCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SaqAI TTAA 2 cut(s) 663, 775
SatI GCNGC 2 cut(s) 494, 510
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 2 cut(s) 117, 435
ScaI AGTACT 1 cut(s) 426
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 302
SetI ASST 8 cut(s) 290, 406, 440, 495, 604, 663, 672, 676
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 2 cut(s) 195, 750
SinI GGWCC 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 3 cut(s) 164, 272, 380
SsiI CCGC 1 cut(s) 640
SspMI CTAG 1 cut(s) 671
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 4 cut(s) 429, 503, 616, 633
TaqI TCGA 4 cut(s) 236, 387, 505, 654
TasI AATT 3 cut(s) 164, 272, 380
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 663, 775
Tru9I TTAA 2 cut(s) 663, 775
TscAI CASTG 2 cut(s) 283, 621
TseI GCWGC 2 cut(s) 493, 509
TspDTI ATGAA 4 cut(s) 15, 383, 517, 577
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 2 cut(s) 283, 621
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 2 cut(s) 272, 380
XceI RCATGY 1 cut(s) 62
XmnI GAANNNNTTC 2 cut(s) 158, 317
XspI CTAG 1 cut(s) 671
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.