Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000601

Physical Location & Seq

Genomic Coordinates Forward (+)

34542231 .. 34543130

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1282300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTTCAAAGTCCACAGCAACGTTCCTAGCATTGCTCTCTTTAGTGACATTAGTTCTGGCTCTCGGGGCTAATGCCGGTGGAATCGCAATATATTGGGGTCAGAATGGTAATGAAGGCACATTAGCAGAAACATGTGCTTCAGGGAATTACCAATTTGTAAACGTAGCTTTTCTCACCACCTTCGGCAACGGCCAAACGCCTGCAATCAACCTAGCCGGTCACTGTGACCCAACGACAGAAGAATGCACCAAATTGAGCCCAGAAATCAAGTCATGCCAAGCCAAGGGGATTAAAGTCATACTCTCCATAGGAGGAGCTTCTGGGAGCTACTCTCTAACTTCAGCTGATGATGCAAGGCAAGTTGCAACTTACCTGTGGAATAATTTCTTGGGAGGGCAATCGTCGTCGAGGCCATTGGGAGCTGCCGTTTTGGATGGAATTGATTTTGACATCGAGGGAGGGACTGACCAACATTGGGATGACCTAGCAAGGTACCTCTCTGGATATAGCAAGAGAGGCAAGAAAGTTTACTTGACTGCTGCCCCACAATGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTTAAGACGGGCCTCTTTGACAATGTTTGGGTTCAGTTCTACAACAACCCTCCCTGCCAGTACGCTTCTGGGGATGTGACCAACCTTGAAGACGCCTGGAAGCAGTGGACTTCAGCCATCCCTGCAGATAAGATTTTCTTGGGATTGCCTGCTGCACCTCAAGCTGCTGGTAGCGGGTTTATTCCTGCTACTGATCTTAGCTCACAAGTTCTTCCGGCTATTAAAAGTTCGGCTAAGTATGGAGGCGTCATGCTTTGGTCCAAGTATTATGATGATCTTGATGGATACAGCTCCTCCATCAAGAATGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

300

Amino Acids

31.64

Weight (kDa)

4.79

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	29 - 247	1.1e-21	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24090
fragaria_vesca	FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica	MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica	Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis	pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis	RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata	RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora	Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa	Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha	Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana	Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	495
AciI	CCGC	1 cut(s)	759
AclI	AACGTT	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	3 cut(s)	126, 327, 681
AcyI	GRCGYC	2 cut(s)	678, 831
AfaI	GTAC	2 cut(s)	497, 647
AfiI	CCNNNNNNNGG	2 cut(s)	286, 478
AflII	CTTAAG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	9, 674
AjnI	CCWGG	1 cut(s)	680
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	8 cut(s)	170, 320, 330, 347, 425, 749, 786, 876
AluI	AGCT	8 cut(s)	170, 320, 330, 347, 425, 749, 786, 876
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	3 cut(s)	193, 413, 595
ApeKI	GCWGC	4 cut(s)	425, 542, 737, 749
Asp700I	GAANNNNTTC	1 cut(s)	386
Asp718I	GGTACC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	595, 843
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	843
BanI	GGYRCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	681
BbvI	GCAGC	4 cut(s)	412, 529, 724, 736
BccI	CCATC	4 cut(s)	431, 710, 860, 890
BceAI	ACGGC	2 cut(s)	208, 413
BciT130I	CCWGG	1 cut(s)	682
BciVI	GTATCC	1 cut(s)	863
BfaI	CTAG	4 cut(s)	29, 215, 488, 898
BfmI	CTRYAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	863
BisI	GCNGC	4 cut(s)	426, 543, 738, 750
BlsI	GCNGC	4 cut(s)	427, 544, 739, 751
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	1 cut(s)	843
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	595, 843
BmiI	GGNNCC	1 cut(s)	497
BmrFI	CCNGG	1 cut(s)	682
BmsI	GCATC	2 cut(s)	343, 556
BpiI	GAAGAC	1 cut(s)	681
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpuEI	CTTGAG	1 cut(s)	729
BsaHI	GRCGYC	2 cut(s)	678, 831
BsaJI	CCNNGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	4 cut(s)	414, 444, 863, 893
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 478
Bse118I	RCCGGY	2 cut(s)	77, 218
Bse1I	ACTGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	682
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	4 cut(s)	442, 487, 664, 702
BseLI	CCNNNNNNNGG	2 cut(s)	286, 478
BseMI	GCAATG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	643
BseRI	GAGGAG	2 cut(s)	330, 868
BseXI	GCAGC	4 cut(s)	412, 529, 724, 736
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	3 cut(s)	195, 415, 597
BshNI	GGYRCC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	78, 219, 800
BslFI	GGGAC	2 cut(s)	478, 540
BslI	CCNNNNNNNGG	2 cut(s)	286, 478
BsmFI	GGGAC	2 cut(s)	478, 540
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	3 cut(s)	195, 415, 597
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	778, 859
BspACI	CCGC	1 cut(s)	759
BspANI	GGCC	3 cut(s)	195, 415, 597
BspLI	GGNNCC	1 cut(s)	497
BspMAI	CTGCAG	1 cut(s)	712
BspT107I	GGYRCC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	32
BsrFI	RCCGGY	2 cut(s)	77, 218
BsrI	ACTGG	1 cut(s)	643
BssAI	RCCGGY	2 cut(s)	77, 218
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	778, 859
BssNI	GRCGYC	2 cut(s)	678, 831
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	1 cut(s)	227
BstACI	GRCGYC	2 cut(s)	678, 831
BstAFI	CTTAAG	1 cut(s)	587
BstC8I	GCNNGC	2 cut(s)	204, 735
BstDEI	CTNAG	2 cut(s)	782, 819
BstF5I	GGATG	4 cut(s)	442, 487, 664, 702
BstKTI	GATC	2 cut(s)	781, 862
BstMBI	GATC	2 cut(s)	778, 859
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 353, 519, 707, 746
BstNI	CCWGG	1 cut(s)	682
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	4 cut(s)	412, 529, 724, 736
BstV2I	GAAGAC	1 cut(s)	681
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	3 cut(s)	195, 415, 597
BtsCI	GGATG	4 cut(s)	442, 487, 664, 702
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	2 cut(s)	223, 695
Cac8I	GCNNGC	2 cut(s)	204, 735
Cfr10I	RCCGGY	2 cut(s)	77, 218
Cfr13I	GGNCC	2 cut(s)	595, 843
CseI	GACGC	2 cut(s)	686, 820
Csp6I	GTAC	2 cut(s)	496, 646
CviAII	CATG	3 cut(s)	135, 276, 835
CviQI	GTAC	2 cut(s)	496, 646
DdeI	CTNAG	2 cut(s)	782, 819
DpnI	GATC	2 cut(s)	780, 861
DpnII	GATC	2 cut(s)	778, 859
EaeI	YGGCCR	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	843
Eco57I	CTGAAG	3 cut(s)	126, 327, 681
Eco88I	CYCGRG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	680
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	3 cut(s)	138, 279, 838
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	2 cut(s)	478, 540
FatI	CATG	3 cut(s)	134, 275, 834
FauI	CCCGC	1 cut(s)	752
Fnu4HI	GCNGC	4 cut(s)	426, 543, 738, 750
FokI	GGATG	4 cut(s)	449, 494, 671, 689
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	426, 543, 738, 750
FspBI	CTAG	4 cut(s)	29, 215, 488, 898
GluI	GCNGC	4 cut(s)	426, 543, 738, 750
HaeIII	GGCC	3 cut(s)	195, 415, 597
HapII	CCGG	3 cut(s)	78, 219, 800
HgaI	GACGC	2 cut(s)	686, 820
Hin1I	GRCGYC	2 cut(s)	678, 831
Hin1II	CATG	3 cut(s)	138, 279, 838
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	3 cut(s)	78, 219, 800
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	4 cut(s)	15, 163, 532, 693
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	4 cut(s)	504, 563, 863, 886
Hpy8I	GTNNAC	4 cut(s)	15, 163, 532, 693
Hpy99I	CGWCG	2 cut(s)	409, 412
HpyAV	CCTTC	2 cut(s)	110, 193
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	23, 165
HpyCH4V	TGCA	7 cut(s)	206, 249, 356, 368, 584, 710, 740
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 353, 519, 707, 746
HpyF3I	CTNAG	2 cut(s)	782, 819
HpySE526I	ACGT	2 cut(s)	23, 165
Hsp92I	GRCGYC	2 cut(s)	678, 831
Hsp92II	CATG	3 cut(s)	138, 279, 838
KpnI	GGTACC	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	778, 859
LmnI	GCTCC	4 cut(s)	317, 327, 422, 881
Lsp1109I	GCAGC	4 cut(s)	412, 529, 724, 736
LweI	GCATC	2 cut(s)	343, 556
MaeI	CTAG	4 cut(s)	29, 215, 488, 898
MaeII	ACGT	2 cut(s)	23, 165
MaeIII	GTNAC	4 cut(s)	46, 221, 227, 661
MalI	GATC	2 cut(s)	780, 861
MboI	GATC	2 cut(s)	778, 859
MboII	GAAGA	3 cut(s)	254, 686, 788
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	5 cut(s)	148, 155, 254, 385, 441
MmeI	TCCRAC	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	3 cut(s)	294, 588, 807
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	3 cut(s)	78, 219, 800
MspR9I	CCNGG	1 cut(s)	682
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	5 cut(s)	68, 353, 519, 707, 746
NdeII	GATC	2 cut(s)	778, 859
NlaIII	CATG	3 cut(s)	138, 279, 838
NlaIV	GGNNCC	1 cut(s)	497
NmuCI	GTSAC	4 cut(s)	46, 221, 227, 661
NspI	RCATGY	1 cut(s)	138
PciI	ACATGT	1 cut(s)	134
PctI	GAATGC	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	4 cut(s)	427, 544, 739, 751
PscI	ACATGT	1 cut(s)	134
Psp1406I	AACGTT	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	2 cut(s)	595, 843
PstI	CTGCAG	1 cut(s)	712
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	497, 647
RsaNI	GTAC	2 cut(s)	496, 646
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	294, 588, 807
SatI	GCNGC	4 cut(s)	426, 543, 738, 750
Sau3AI	GATC	2 cut(s)	778, 859
Sau96I	GGNCC	2 cut(s)	595, 843
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	1 cut(s)	263
SfaNI	GCATC	2 cut(s)	343, 556
SfcI	CTRYAG	1 cut(s)	708
SinI	GGWCC	1 cut(s)	843
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	587, 744
SmoI	CTYRAG	2 cut(s)	587, 744
Sse9I	AATT	5 cut(s)	148, 155, 254, 385, 441
SsiI	CCGC	1 cut(s)	759
SspMI	CTAG	4 cut(s)	29, 215, 488, 898
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	2 cut(s)	26, 168
TaqI	TCGA	2 cut(s)	410, 456
TasI	AATT	5 cut(s)	148, 155, 254, 385, 441
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	294, 588, 807
Tru9I	TTAA	3 cut(s)	294, 588, 807
TscAI	CASTG	2 cut(s)	230, 695
TseFI	GTSAC	4 cut(s)	46, 221, 227, 661
TseI	GCWGC	4 cut(s)	425, 542, 737, 749
Tsp45I	GTSAC	4 cut(s)	46, 221, 227, 661
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	230, 695
Vha464I	CTTAAG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	843
XceI	RCATGY	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	4 cut(s)	29, 215, 488, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.