FvH4_7g30780

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000601
Physical Location & Seq
Reverse (-)
22339636 .. 22340669
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30780.t1

Sequence Viewer

Length: 927 bp
ATGGCAAGAATGGCAAGGTCTCCTCTTCTTCTCTCACTCCTTGTCCTAATCTCATTTCTGGTCCTAATCAAGCCCTCTCACGCCGGTGGCATAGCCATCTACTGGGGGCAAAACGGGAACGAAGGTACCCTAAAACAAACCTGCGCCACCGGAAAATACGAGTACGTGAACATAGCCTTCCTCAACGTCTTCGGCAGCGGCCAAACCCCACAAATCAACCTAGCCGGGCACTGCAACCCAGCCTCCAATGGTTGCGCCTCTGTCGGCCCTGAAGTCACATTCTGCCAGAGCCTAGGAGTCAAGGTGTTTCTCTCCCTCGGAGGTGGCATCGGAAACTACTCTTTATCATCTGCTTCTGACGCAAAAGATGTAGCCAACTACCTATGGAGCAGTTTCCTAGGCGGAAAAGGAAAAGGCAGAGACAAGTCTACTACTACTCGTCCCTTCGGCCACGCTGTTTTGGATGGGATAGATTTCGACATAGAGCAAGGAGCAAATCCATATTGGGATGACCTTGCACGTTATCTGAAGGAGTATAGCAAACCAACAAGGGCTGTGTACTTAGCTGCAGCTCCTCAGTGTCCATTTCCTGATGCGTTCGTAGGCAGTGCGATTAGTACAGGGCTTTTCGACTATGTTTGGGTTCAGTTCTACAACAATCCTCCATGCCAGTATAGCTCAGGTAACACTGACAATATACTAAGCTCGTGGAATAAATGGACTACGTCTATACAAGCAAGGAAGATCTTTCTGGGGTTGCCGGCGGCTCCAGCTGCAGCTGGAAGTGGGTTCATTCCGGCTACTGTGCTGACTTCTGAAATACTTCCGGTGATCAAGAAGTCGTCGAAGTATGGTGGCGTGATGTTGTGGTCAAAGTATTATGATGATCAAAGTGGTTATAGTTCCTCCATTATCAATAGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

309

Amino Acids

33.0

Weight (kDa)

8.62

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 31 - 256 1.9e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 149
Acc65I GGTACC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 102
AccI GTMKAC 1 cut(s) 428
AciI CCGC 3 cut(s) 198, 402, 764
AcoI YGGCCR 2 cut(s) 199, 448
AcuI CTGAAG 2 cut(s) 291, 548
AfaI GTAC 4 cut(s) 127, 164, 560, 619
AfiI CCNNNNNNNGG 1 cut(s) 102
AleI CACNNNNGTG 1 cut(s) 84
AluBI AGCT 6 cut(s) 566, 572, 678, 705, 773, 779
AluI AGCT 6 cut(s) 566, 572, 678, 705, 773, 779
Alw26I GTCTC 2 cut(s) 24, 414
AoxI GGCC 3 cut(s) 199, 265, 448
ApeKI GCWGC 5 cut(s) 195, 566, 569, 773, 776
Asp700I GAANNNNTTC 1 cut(s) 822
Asp718I GGTACC 1 cut(s) 125
AspA2I CCTAGG 2 cut(s) 292, 397
AspLEI GCGC 2 cut(s) 146, 257
AspS9I GGNCC 2 cut(s) 61, 266
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 841
AvaII GGWCC 1 cut(s) 61
AvrII CCTAGG 2 cut(s) 292, 397
BaeGI GKGCMC 1 cut(s) 231
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BanI GGYRCC 1 cut(s) 125
BauI CACGAG 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 5 cut(s) 207, 553, 581, 760, 788
BccI CCATC 2 cut(s) 104, 458
BclI TGATCA 2 cut(s) 831, 886
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 24, 414
BfaI CTAG 3 cut(s) 221, 293, 398
BfmI CTRYAG 2 cut(s) 567, 774
BfuAI ACCTGC 1 cut(s) 149
BglII AGATCT 1 cut(s) 744
BisI GCNGC 7 cut(s) 196, 199, 567, 570, 765, 774, 777
BlnI CCTAGG 2 cut(s) 292, 397
BlsI GCNGC 7 cut(s) 197, 200, 568, 571, 766, 775, 778
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 61, 266
BmiI GGNNCC 2 cut(s) 127, 768
BmrFI CCNGG 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 2 cut(s) 336, 583
BmuI ACTGGG 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 679
BpuMI CCSGG 1 cut(s) 226
BsaAI YACGTR 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 292, 316, 397
BsaWI WCCGGW 2 cut(s) 149, 826
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse118I RCCGGY 2 cut(s) 83, 760
Bse1I ACTGG 2 cut(s) 107, 670
BseDI CCNNGG 3 cut(s) 292, 316, 397
BseGI GGATG 2 cut(s) 469, 514
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 590, 693
BseNI ACTGG 2 cut(s) 107, 670
BseRI GAGGAG 2 cut(s) 12, 564
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 5 cut(s) 207, 553, 581, 760, 788
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 3 cut(s) 201, 267, 450
BshNI GGYRCC 1 cut(s) 125
BsiSI CCGG 6 cut(s) 84, 150, 225, 761, 797, 827
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 2 cut(s) 24, 414
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 3 cut(s) 201, 267, 450
Bso31I GGTCTC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 744, 831, 886
BspACI CCGC 3 cut(s) 198, 402, 764
BspANI GGCC 3 cut(s) 201, 267, 450
BspCNI CTCAG 2 cut(s) 589, 692
BspLI GGNNCC 2 cut(s) 127, 768
BspMAI CTGCAG 2 cut(s) 571, 778
BspMI ACCTGC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 24
BsrFI RCCGGY 2 cut(s) 83, 760
BsrI ACTGG 2 cut(s) 107, 670
BssAI RCCGGY 2 cut(s) 83, 760
BssECI CCNNGG 3 cut(s) 292, 316, 397
BssMI GATC 3 cut(s) 744, 831, 886
BssSI CACGAG 1 cut(s) 706
BssT1I CCWWGG 2 cut(s) 292, 397
Bst2BI CACGAG 1 cut(s) 706
Bst4CI ACNGT 1 cut(s) 805
Bst6I CTCTTC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 762
BstDEI CTNAG 4 cut(s) 562, 576, 679, 701
BstF5I GGATG 2 cut(s) 469, 514
BstHHI GCGC 2 cut(s) 146, 257
BstKTI GATC 3 cut(s) 747, 834, 889
BstMAI GTCTC 2 cut(s) 24, 414
BstMBI GATC 3 cut(s) 744, 831, 886
BstMWI GCNNNNNNNGC 5 cut(s) 11, 359, 675, 770, 773
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 2 cut(s) 567, 774
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 5 cut(s) 207, 553, 581, 760, 788
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 744
BstYI RGATCY 1 cut(s) 744
BsuRI GGCC 3 cut(s) 201, 267, 450
BtsCI GGATG 2 cut(s) 469, 514
BtsI GCAGTG 2 cut(s) 229, 613
BtsIMutI CAGTG 4 cut(s) 229, 584, 613, 687
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 762
CfoI GCGC 2 cut(s) 146, 257
Cfr10I RCCGGY 2 cut(s) 83, 760
Cfr13I GGNCC 2 cut(s) 61, 266
CseI GACGC 1 cut(s) 368
Csp6I GTAC 4 cut(s) 126, 163, 559, 618
CviAII CATG 1 cut(s) 666
CviQI GTAC 4 cut(s) 126, 163, 559, 618
DdeI CTNAG 4 cut(s) 562, 576, 679, 701
DpnI GATC 3 cut(s) 746, 833, 888
DpnII GATC 3 cut(s) 744, 831, 886
EaeI YGGCCR 2 cut(s) 199, 448
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 417
Eco130I CCWWGG 2 cut(s) 292, 397
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 291, 548
EcoT14I CCWWGG 2 cut(s) 292, 397
ErhI CCWWGG 2 cut(s) 292, 397
FaeI CATG 1 cut(s) 669
FaqI GGGAC 1 cut(s) 426
FatI CATG 1 cut(s) 665
FbaI TGATCA 2 cut(s) 831, 886
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 7 cut(s) 196, 199, 567, 570, 765, 774, 777
FokI GGATG 2 cut(s) 476, 521
Fsp4HI GCNGC 7 cut(s) 196, 199, 567, 570, 765, 774, 777
FspBI CTAG 3 cut(s) 221, 293, 398
GlaI GCGC 2 cut(s) 145, 256
GluI GCNGC 7 cut(s) 196, 199, 567, 570, 765, 774, 777
GsaI CCCAGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 3 cut(s) 201, 267, 450
HapII CCGG 6 cut(s) 84, 150, 225, 761, 797, 827
HgaI GACGC 1 cut(s) 368
HhaI GCGC 2 cut(s) 146, 257
Hin1II CATG 1 cut(s) 669
Hin6I GCGC 2 cut(s) 144, 255
HinP1I GCGC 2 cut(s) 144, 255
HinfI GANTC 1 cut(s) 297
HpaII CCGG 6 cut(s) 84, 150, 225, 761, 797, 827
HphI GGTGA 1 cut(s) 841
Hpy166II GTNNAC 3 cut(s) 169, 429, 559
Hpy188I TCNGA 5 cut(s) 320, 332, 358, 528, 817
Hpy188III TCNNGA 2 cut(s) 590, 835
Hpy8I GTNNAC 3 cut(s) 169, 429, 559
Hpy99I CGWCG 1 cut(s) 847
HpyAV CCTTC 4 cut(s) 116, 187, 454, 523
HpyCH4III ACNGT 1 cut(s) 805
HpyCH4IV ACGT 4 cut(s) 165, 186, 520, 725
HpyCH4V TGCA 4 cut(s) 234, 518, 569, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 359, 675, 770, 773
HpyF3I CTNAG 4 cut(s) 562, 576, 679, 701
HpySE526I ACGT 4 cut(s) 165, 186, 520, 725
Hsp92II CATG 1 cut(s) 669
HspAI GCGC 2 cut(s) 144, 255
KpnI GGTACC 1 cut(s) 129
KroI GCCGGC 1 cut(s) 760
KroNI GCCGGC 1 cut(s) 762
Ksp22I TGATCA 2 cut(s) 831, 886
Kzo9I GATC 3 cut(s) 744, 831, 886
LmnI GCTCC 4 cut(s) 387, 491, 577, 772
Lsp1109I GCAGC 5 cut(s) 207, 553, 581, 760, 788
LweI GCATC 2 cut(s) 336, 583
MaeI CTAG 3 cut(s) 221, 293, 398
MaeII ACGT 4 cut(s) 165, 186, 520, 725
MaeIII GTNAC 2 cut(s) 274, 683
MalI GATC 3 cut(s) 746, 833, 888
MboI GATC 3 cut(s) 744, 831, 886
MboII GAAGA 4 cut(s) 17, 20, 181, 754
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 1 cut(s) 231
MlyI GAGTC 1 cut(s) 306
MroNI GCCGGC 1 cut(s) 760
MroXI GAANNNNTTC 1 cut(s) 822
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 3 cut(s) 198, 773, 779
MspI CCGG 6 cut(s) 84, 150, 225, 761, 797, 827
MspR9I CCNGG 1 cut(s) 226
MwoI GCNNNNNNNGC 5 cut(s) 11, 359, 675, 770, 773
NaeI GCCGGC 1 cut(s) 762
NciI CCSGG 1 cut(s) 226
NdeII GATC 3 cut(s) 744, 831, 886
NgoMIV GCCGGC 1 cut(s) 760
NlaIII CATG 1 cut(s) 669
NlaIV GGNNCC 2 cut(s) 127, 768
NmuCI GTSAC 1 cut(s) 274
OliI CACNNNNGTG 1 cut(s) 84
PdiI GCCGGC 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 822
PflFI GACNNNGTC 1 cut(s) 724
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 7 cut(s) 197, 200, 568, 571, 766, 775, 778
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 127, 768
PspPI GGNCC 2 cut(s) 61, 266
PstI CTGCAG 2 cut(s) 571, 778
PsuI RGATCY 1 cut(s) 744
PsyI GACNNNGTC 1 cut(s) 724
PvuII CAGCTG 2 cut(s) 773, 779
RsaI GTAC 4 cut(s) 127, 164, 560, 619
RsaNI GTAC 4 cut(s) 126, 163, 559, 618
RseI CAYNNNNRTG 1 cut(s) 84
SatI GCNGC 7 cut(s) 196, 199, 567, 570, 765, 774, 777
Sau3AI GATC 3 cut(s) 744, 831, 886
Sau96I GGNCC 2 cut(s) 61, 266
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 336, 583
SfcI CTRYAG 2 cut(s) 567, 774
SgrAI CRCCGGYG 1 cut(s) 83
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 84
SsiI CCGC 3 cut(s) 198, 402, 764
SspMI CTAG 3 cut(s) 221, 293, 398
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 2 cut(s) 292, 397
TaaI ACNGT 1 cut(s) 805
TaiI ACGT 4 cut(s) 168, 189, 523, 728
TaqI TCGA 3 cut(s) 477, 630, 845
TatI WGTACW 2 cut(s) 558, 617
TauI GCSGC 2 cut(s) 201, 767
TscAI CASTG 4 cut(s) 236, 584, 613, 694
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 5 cut(s) 195, 566, 569, 773, 776
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 781
TspRI CASTG 4 cut(s) 236, 584, 613, 694
Tth111I GACNNNGTC 1 cut(s) 724
Van91I CCANNNNNTGG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 61
XmaJI CCTAGG 2 cut(s) 292, 397
XmiI GTMKAC 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 3 cut(s) 221, 293, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.