Prupe.2G179300_v2.0.a1

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000601
Physical Location & Seq
Forward (+)
22308103 .. 22309124
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G179300.1

Sequence Viewer

Length: 897 bp
ATGGCACCAAAGTTAGCAATTTCCGTAGCATTTCTCATTTCAGTAAGCCTAGCAGTACAATTTGGAGCTGATGCTGCAGGCATTGCCATCTACTGGGGTCAAAATGGGAATGAAGGTACCTTGGAGGAAACTTGTGCCACAGGCAACTATGAATTTGTAAACCTAGCTTTTCTTCCAACCTTTGGCAATGGCCAGACCCCCATGATCAACCTAGCTGGACACTGTGATCCCTACACTAATGGCTGCACTGGCTTGAGCTCTGACATTAAATCATGCCAAGCAAAAGGGGTCAAGGTCATTCTTTCAATTGGAGGAGGAGCAGGGAGCTACTACCTCACATCTAAAGAGGATGCTAGGCAAGTTGCTACTTACTTATGGAACAATTTCTTGGGGGGAAGCTCTTCATCTCGCCCGCTCGGTGACGCTGTTTTGGATGGAATTGATTTCGACATTGAAGGAGGAACAAACCTACATTGGGATGACCTTGCAAGGTACCTCTCTGCATATAGTAAACAAGGTAAGAAAGTTTATTTAACTGCAGCTCCTCAGTGCCCTTTTCCAGATGCTTGGGTTGGGGGTGCCCTCAAGACAGGCCTTTTTGACAATGTTTGGGTCCAATTCTACAACAACCCACCTTGCCAATACTCCTCTGGGGATCTTAGCAACCTTGAAAATGCATGGAAGCAGTGGATTTCAGATATTCCAGCTACCAAGATATTCCTAGGACTACCAGCTGCCCCTGCAGCTGCTGGAAGTGGCTTCATTCCTGTGGCTGATCTCACTTCTAAAGTGCTTCCAGCAATTAAAGGTTCTCCCAAGTATGGAGGGGTCATGCTGTGGTCCAAGTATTATGATGATCAAACTAAATATAGCTCTTCCATCAAGAGCAGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

299

Amino Acids

31.68

Weight (kDa)

5.18

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 116, 492
AccB1I GGYRCC 4 cut(s) 4, 116, 492, 578
AccB7I CCANNNNNTGG 2 cut(s) 93, 182
AccBSI CCGCTC 1 cut(s) 415
AciI CCGC 1 cut(s) 413
AclWI GGATC 2 cut(s) 221, 663
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 3 cut(s) 57, 118, 494
AfiI CCNNNNNNNGG 4 cut(s) 93, 182, 475, 821
AgsI TTSAA 3 cut(s) 306, 455, 671
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
Alw21I GWGCWC 1 cut(s) 260
AlwI GGATC 2 cut(s) 221, 663
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 2 cut(s) 190, 592
ApeKI GCWGC 6 cut(s) 74, 243, 539, 734, 743, 746
ApoI RAATTY 1 cut(s) 152
Asp700I GAANNNNTTC 2 cut(s) 383, 400
Asp718I GGTACC 2 cut(s) 116, 492
AspA2I CCTAGG 1 cut(s) 721
AspS9I GGNCC 2 cut(s) 613, 840
AsuHPI GGTGA 1 cut(s) 431
AvaII GGWCC 2 cut(s) 613, 840
AvrII CCTAGG 1 cut(s) 721
BaeGI GKGCMC 2 cut(s) 554, 583
BalI TGGCCA 1 cut(s) 192
BanI GGYRCC 4 cut(s) 4, 116, 492, 578
BanII GRGCYC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 6 cut(s) 61, 230, 551, 721, 733, 755
BccI CCATC 3 cut(s) 95, 428, 887
BclI TGATCA 2 cut(s) 204, 856
BfaI CTAG 5 cut(s) 50, 164, 212, 354, 722
BfmI CTRYAG 3 cut(s) 75, 537, 741
BisI GCNGC 6 cut(s) 75, 244, 540, 735, 744, 747
BlnI CCTAGG 1 cut(s) 721
BlsI GCNGC 6 cut(s) 76, 245, 541, 736, 745, 748
Bme18I GGWCC 2 cut(s) 613, 840
BmgT120I GGNCC 2 cut(s) 613, 840
BmiI GGNNCC 5 cut(s) 6, 118, 494, 580, 614
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 3 cut(s) 61, 340, 553
BmuI ACTGGG 1 cut(s) 103
BpuEI CTTGAG 2 cut(s) 274, 569
BsaJI CCNNGG 2 cut(s) 120, 721
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 182, 475, 821
Bse1I ACTGG 2 cut(s) 98, 253
Bse3DI GCAATG 2 cut(s) 81, 193
BseDI CCNNGG 2 cut(s) 120, 721
BseGI GGATG 3 cut(s) 355, 439, 484
BseLI CCNNNNNNNGG 4 cut(s) 93, 182, 475, 821
BseMI GCAATG 2 cut(s) 81, 193
BseMII CTCAG 1 cut(s) 560
BseNI ACTGG 2 cut(s) 98, 253
BseRI GAGGAG 4 cut(s) 327, 330, 534, 637
BseSI GKGCMC 2 cut(s) 554, 583
BseXI GCAGC 6 cut(s) 61, 230, 551, 721, 733, 755
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 2 cut(s) 192, 594
BshNI GGYRCC 4 cut(s) 4, 116, 492, 578
BsiHKAI GWGCWC 1 cut(s) 260
BslI CCNNNNNNNGG 4 cut(s) 93, 182, 475, 821
BsnI GGCC 2 cut(s) 192, 594
Bsp1286I GDGCHC 3 cut(s) 260, 554, 583
Bsp143I GATC 5 cut(s) 204, 226, 655, 775, 856
BspACI CCGC 1 cut(s) 413
BspANI GGCC 2 cut(s) 192, 594
BspCNI CTCAG 1 cut(s) 559
BspLI GGNNCC 5 cut(s) 6, 118, 494, 580, 614
BspMAI CTGCAG 3 cut(s) 79, 541, 745
BspPI GGATC 2 cut(s) 221, 663
BspQI GCTCTTC 2 cut(s) 406, 880
BspT107I GGYRCC 4 cut(s) 4, 116, 492, 578
BsrBI CCGCTC 1 cut(s) 415
BsrDI GCAATG 2 cut(s) 81, 193
BsrI ACTGG 2 cut(s) 98, 253
BssECI CCNNGG 2 cut(s) 120, 721
BssMI GATC 5 cut(s) 204, 226, 655, 775, 856
BssT1I CCWWGG 2 cut(s) 120, 721
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 2 cut(s) 406, 880
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 79, 413
BstDEI CTNAG 2 cut(s) 546, 659
BstF5I GGATG 3 cut(s) 355, 439, 484
BstKTI GATC 5 cut(s) 207, 229, 658, 778, 859
BstMBI GATC 5 cut(s) 204, 226, 655, 775, 856
BstMWI GCNNNNNNNGC 5 cut(s) 74, 83, 249, 740, 743
BstSFI CTRYAG 3 cut(s) 75, 537, 741
BstSLI GKGCMC 2 cut(s) 554, 583
BstV1I GCAGC 6 cut(s) 61, 230, 551, 721, 733, 755
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 1 cut(s) 567
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 2 cut(s) 192, 594
BtsCI GGATG 3 cut(s) 355, 439, 484
BtsI GCAGTG 2 cut(s) 692, 895
BtsIMutI CAGTG 5 cut(s) 220, 246, 554, 692, 895
Cac8I GCNNGC 2 cut(s) 79, 413
CaiI CAGNNNCTG 1 cut(s) 749
Cfr13I GGNCC 2 cut(s) 613, 840
CseI GACGC 1 cut(s) 431
Csp6I GTAC 3 cut(s) 56, 117, 493
CviAII CATG 4 cut(s) 202, 273, 678, 832
CviQI GTAC 3 cut(s) 56, 117, 493
DdeI CTNAG 2 cut(s) 546, 659
DpnI GATC 5 cut(s) 206, 228, 657, 777, 858
DpnII GATC 5 cut(s) 204, 226, 655, 775, 856
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 406, 880
EarI CTCTTC 2 cut(s) 406, 880
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 120, 721
Eco147I AGGCCT 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 613, 840
Eco53kI GAGCTC 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 120, 721
EcoT22I ATGCAT 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 2 cut(s) 120, 721
FaeI CATG 4 cut(s) 205, 276, 681, 835
FatI CATG 4 cut(s) 201, 272, 677, 831
FauI CCCGC 1 cut(s) 420
FbaI TGATCA 2 cut(s) 204, 856
Fnu4HI GCNGC 6 cut(s) 75, 244, 540, 735, 744, 747
FokI GGATG 3 cut(s) 362, 446, 491
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 6 cut(s) 75, 244, 540, 735, 744, 747
FspBI CTAG 5 cut(s) 50, 164, 212, 354, 722
GluI GCNGC 6 cut(s) 75, 244, 540, 735, 744, 747
HaeIII GGCC 2 cut(s) 192, 594
HgaI GACGC 1 cut(s) 431
Hin1II CATG 4 cut(s) 205, 276, 681, 835
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 2 cut(s) 160, 512
Hpy188I TCNGA 2 cut(s) 262, 697
Hpy188III TCNNGA 3 cut(s) 560, 586, 883
Hpy8I GTNNAC 2 cut(s) 160, 512
HpyAV CCTTC 2 cut(s) 107, 449
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4V TGCA 7 cut(s) 77, 246, 488, 503, 539, 677, 743
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 83, 249, 740, 743
HpyF3I CTNAG 2 cut(s) 546, 659
Hsp92II CATG 4 cut(s) 205, 276, 681, 835
KpnI GGTACC 2 cut(s) 120, 496
Ksp22I TGATCA 2 cut(s) 204, 856
Kzo9I GATC 5 cut(s) 204, 226, 655, 775, 856
LguI GCTCTTC 2 cut(s) 406, 880
LmnI GCTCC 4 cut(s) 65, 317, 324, 547
Lsp1109I GCAGC 6 cut(s) 61, 230, 551, 721, 733, 755
LweI GCATC 3 cut(s) 61, 340, 553
MaeI CTAG 5 cut(s) 50, 164, 212, 354, 722
MaeIII GTNAC 1 cut(s) 419
MalI GATC 5 cut(s) 206, 228, 657, 777, 858
MbiI CCGCTC 1 cut(s) 415
MboI GATC 5 cut(s) 204, 226, 655, 775, 856
MboII GAAGA 3 cut(s) 164, 393, 867
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 3 cut(s) 260, 554, 583
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 8 cut(s) 18, 59, 152, 306, 382, 438, 617, 801
MluNI TGGCCA 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 192
Mph1103I ATGCAT 1 cut(s) 679
MroXI GAANNNNTTC 2 cut(s) 383, 400
MscI TGGCCA 1 cut(s) 192
MseI TTAA 3 cut(s) 267, 533, 804
MslI CAYNNNNRTG 2 cut(s) 477, 767
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 2 cut(s) 734, 746
MunI CAATTG 1 cut(s) 306
MwoI GCNNNNNNNGC 5 cut(s) 74, 83, 249, 740, 743
NdeII GATC 5 cut(s) 204, 226, 655, 775, 856
NlaIII CATG 4 cut(s) 205, 276, 681, 835
NlaIV GGNNCC 5 cut(s) 6, 118, 494, 580, 614
NmuCI GTSAC 1 cut(s) 419
NsiI ATGCAT 1 cut(s) 679
PceI AGGCCT 1 cut(s) 594
PciSI GCTCTTC 2 cut(s) 406, 880
PdmI GAANNNNTTC 2 cut(s) 383, 400
PflMI CCANNNNNTGG 2 cut(s) 93, 182
PkrI GCNGC 6 cut(s) 76, 245, 541, 736, 745, 748
Psp124BI GAGCTC 1 cut(s) 260
PspN4I GGNNCC 5 cut(s) 6, 118, 494, 580, 614
PspPI GGNCC 2 cut(s) 613, 840
PstI CTGCAG 3 cut(s) 79, 541, 745
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 1 cut(s) 655
PvuII CAGCTG 2 cut(s) 734, 746
RsaI GTAC 3 cut(s) 57, 118, 494
RsaNI GTAC 3 cut(s) 56, 117, 493
RseI CAYNNNNRTG 2 cut(s) 477, 767
SacI GAGCTC 1 cut(s) 260
SapI GCTCTTC 2 cut(s) 406, 880
SaqAI TTAA 3 cut(s) 267, 533, 804
SatI GCNGC 6 cut(s) 75, 244, 540, 735, 744, 747
Sau3AI GATC 5 cut(s) 204, 226, 655, 775, 856
Sau96I GGNCC 2 cut(s) 613, 840
SduI GDGCHC 3 cut(s) 260, 554, 583
SfaNI GCATC 3 cut(s) 61, 340, 553
SfcI CTRYAG 3 cut(s) 75, 537, 741
SinI GGWCC 2 cut(s) 613, 840
SmiMI CAYNNNNRTG 2 cut(s) 477, 767
SmlI CTYRAG 2 cut(s) 253, 584
SmoI CTYRAG 2 cut(s) 253, 584
Sse9I AATT 8 cut(s) 18, 59, 152, 306, 382, 438, 617, 801
SseBI AGGCCT 1 cut(s) 594
SsiI CCGC 1 cut(s) 413
SspMI CTAG 5 cut(s) 50, 164, 212, 354, 722
SstI GAGCTC 1 cut(s) 260
StuI AGGCCT 1 cut(s) 594
StyI CCWWGG 2 cut(s) 120, 721
TaaI ACNGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 447
TasI AATT 8 cut(s) 18, 59, 152, 306, 382, 438, 617, 801
TatI WGTACW 1 cut(s) 55
Tru1I TTAA 3 cut(s) 267, 533, 804
Tru9I TTAA 3 cut(s) 267, 533, 804
TscAI CASTG 5 cut(s) 227, 253, 554, 692, 895
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 6 cut(s) 74, 243, 539, 734, 743, 746
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 4 cut(s) 126, 165, 393, 751
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 5 cut(s) 227, 253, 554, 692, 895
Van91I CCANNNNNTGG 2 cut(s) 93, 182
VpaK11BI GGWCC 2 cut(s) 613, 840
XapI RAATTY 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XmaJI CCTAGG 1 cut(s) 721
XmnI GAANNNNTTC 2 cut(s) 383, 400
XspI CTAG 5 cut(s) 50, 164, 212, 354, 722
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.