RLG00000019795

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000601
Physical Location & Seq
Reverse (-)
56839892 .. 56840395
504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019795

Sequence Viewer

Length: 405 bp
ATGTACTTGTGGAACAACTTCTTGGGAGGACAGTCGTCATCCAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTTGATATTGAAGGAGGAACTGATCAACATTGGGATGACCTCGCTAGGTACCTTTCTGGCCTCTTCGATTTTGTCTGGGTGCAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGTGATGTTTCAAATCTCGAAGATGCTTGGAAGCAGTGGACTTCTGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCTCAAGCTGCTGGCAGTGGATTTATTCCTGCAGCTGATCTCAACTCACCAGTCCTTCCAGCTATCAAAAATTCGGCGAAATATGGAGGTGTCATGCTTGGTCGAAGTATTATGATGATCTAG

Protein Analysis

135

Amino Acids

14.59

Weight (kDa)

4.48

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24090
fragaria_vesca FvH4_7g15560 FvH4_7g30230 FvH4_7g30780
malus_domestica MD01G1071700.v1.1 MD07G1282300.v1.1 MD07G1282500.v1.1 MD07G1282800.v1.1
prunus_persica Prupe.2G177900_v2.0.a1 Prupe.2G179300_v2.0.a1 Prupe.2G304600_v2.0.a1 Prupe.2G305100_v2.0.a1
pyrus_communis pycom01g22220 pycom07g25620 pycom07g25710
rosa_chinensis RchiOBHm_Chr1g0358211 RchiOBHm_Chr1g0358221 RchiOBHm_Chr1g0358231 RchiOBHm_Chr1g0378291 RchiOBHm_Chr1g0379611 RchiOBHm_Chr1g0379721 RchiOBHm_Chr2g0139211 RchiOBHm_Chr2g0156271 RchiOBHm_Chr3g0487471 RchiOBHm_Chr4g0400341 RchiOBHm_Chr5g0069621
rosa_laevigata RLG00000009194 RLG00000019795 RLG00000020900 RLG00000020903 RLG00000026363 RLG00000026376 RLG00000026390 RLG00000027981 RLG00000027982
rosa_multiflora Rmu_co8335173.1_g000001 Rmu_co8492325.1_g000001 Rmu_sc0001803.1_g000006 Rmu_sc0002071.1_g000010 Rmu_sc0002831.1_g000023 Rmu_sc0007072.1_g000002 Rmu_sc0013028.1_g000008 Rmu_sc0013545.1_g000007 Rmu_sc0034114.1_g000001
rosa_roxburghii Rroxscaffold_2G00105550 Rroxscaffold_4G00279940 Rroxscaffold_4G00280040 Rroxscaffold_4G00298330 Rroxscaffold_4G00298350
rosa_rugosa Rorug01G0259900 Rorug01G0407900 Rorug01G0414900 Rorug02G0355600 Rorug02G0452700
rosa_samantha Rh1AG273700 Rh1AG273800 Rh1AG429400 Rh1AG438400 Rh1BG240900 Rh1BG394900 Rh1CG257400 Rh1CG407900 Rh2BG416300 Rh2BG530900 Rh2CG391800 Rh2CG504200 Rh2DG425500 Rh2DG539900 Rh4AG100500 Rh6BG404000 Rh7CG152600
rosa_wichuraiana Rw0G019260 Rw1G024460 Rw1G024470 Rw1G037590 Rw1G038110 Rw1G038190 Rw2G033140 Rw2G042780 Rw5G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 3 cut(s) 5, 128, 188
AgsI TTSAA 2 cut(s) 89, 207
AjnI CCWGG 1 cut(s) 41
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 290, 317, 344
AluI AGCT 3 cut(s) 290, 317, 344
AoxI GGCC 2 cut(s) 44, 136
ApeKI GCWGC 3 cut(s) 278, 290, 314
ApoI RAATTY 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 17
Asp718I GGTACC 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 209, 321
BanI GGYRCC 1 cut(s) 126
BbvI GCAGC 3 cut(s) 265, 277, 326
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 100
BfaI CTAG 2 cut(s) 123, 403
BfmI CTRYAG 1 cut(s) 312
BisI GCNGC 3 cut(s) 279, 291, 315
BlsI GCNGC 3 cut(s) 280, 292, 316
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 46, 208
BoxI GACNNNNGTC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bse1I ACTGG 2 cut(s) 184, 332
BseBI CCWGG 1 cut(s) 43
BseGI GGATG 3 cut(s) 38, 73, 118
BseNI ACTGG 2 cut(s) 184, 332
BseXI GCAGC 3 cut(s) 265, 277, 326
BsgI GTGCAG 2 cut(s) 234, 264
BshFI GGCC 2 cut(s) 46, 138
BshNI GGYRCC 1 cut(s) 126
BsnI GGCC 2 cut(s) 46, 138
Bsp143I GATC 3 cut(s) 100, 319, 399
BspANI GGCC 2 cut(s) 46, 138
BspLI GGNNCC 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 126
BsrI ACTGG 2 cut(s) 184, 332
BssMI GATC 3 cut(s) 100, 319, 399
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 3 cut(s) 38, 73, 118
BstKTI GATC 3 cut(s) 103, 322, 402
BstMBI GATC 3 cut(s) 100, 319, 399
BstMWI GCNNNNNNNGC 2 cut(s) 248, 287
BstNI CCWGG 1 cut(s) 43
BstPAI GACNNNNGTC 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 265, 277, 326
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 2 cut(s) 46, 138
BtsCI GGATG 3 cut(s) 38, 73, 118
BtsI GCAGTG 2 cut(s) 236, 304
BtsIMutI CAGTG 2 cut(s) 236, 304
Cac8I GCNNGC 1 cut(s) 295
Csp6I GTAC 3 cut(s) 4, 127, 187
CviAII CATG 1 cut(s) 376
CviJI RGCY 5 cut(s) 46, 138, 290, 317, 344
CviKI_1 RGCY 5 cut(s) 46, 138, 290, 317, 344
CviQI GTAC 3 cut(s) 4, 127, 187
DdeI CTNAG 1 cut(s) 265
DpnI GATC 3 cut(s) 102, 321, 401
DpnII GATC 3 cut(s) 100, 319, 399
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 379
FaiI YATR 4 cut(s) 255, 366, 377, 395
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 1 cut(s) 375
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 279, 291, 315
FokI GGATG 3 cut(s) 25, 80, 125
Fsp4HI GCNGC 3 cut(s) 279, 291, 315
FspBI CTAG 2 cut(s) 123, 403
GluI GCNGC 3 cut(s) 279, 291, 315
HaeIII GGCC 2 cut(s) 46, 138
Hin1II CATG 1 cut(s) 379
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HphI GGTGA 2 cut(s) 209, 321
Hpy166II GTNNAC 3 cut(s) 76, 189, 234
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 3 cut(s) 76, 189, 234
HpyAV CCTTC 2 cut(s) 83, 347
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 160, 251, 281, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 287
HpyF3I CTNAG 1 cut(s) 265
Hsp92II CATG 1 cut(s) 379
KpnI GGTACC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 100, 319, 399
Lsp1109I GCAGC 3 cut(s) 265, 277, 326
LweI GCATC 2 cut(s) 46, 208
MaeI CTAG 2 cut(s) 123, 403
MalI GATC 3 cut(s) 102, 321, 401
MboI GATC 3 cut(s) 100, 319, 399
MboII GAAGA 2 cut(s) 133, 227
MluCI AATT 2 cut(s) 161, 352
MnlI CCTC 7 cut(s) 20, 86, 128, 149, 186, 294, 362
MroXI GAANNNNTTC 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 248, 287
NdeII GATC 3 cut(s) 100, 319, 399
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 280, 292, 316
PshAI GACNNNNGTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 128
PstI CTGCAG 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 3 cut(s) 5, 128, 188
RsaNI GTAC 3 cut(s) 4, 127, 187
RseI CAYNNNNRTG 1 cut(s) 111
SatI GCNGC 3 cut(s) 279, 291, 315
Sau3AI GATC 3 cut(s) 100, 319, 399
ScrFI CCNGG 1 cut(s) 43
SetI ASST 8 cut(s) 120, 128, 132, 286, 292, 319, 346, 373
SfaNI GCATC 2 cut(s) 46, 208
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 2 cut(s) 161, 352
SspMI CTAG 2 cut(s) 123, 403
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 144, 213, 385
TasI AATT 2 cut(s) 161, 352
TatI WGTACW 2 cut(s) 3, 186
TscAI CASTG 2 cut(s) 236, 304
TseI GCWGC 3 cut(s) 278, 290, 314
TspRI CASTG 2 cut(s) 236, 304
XapI RAATTY 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 2 cut(s) 123, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.