AT2G46490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012962
Physical Location & Seq
Forward (+)
19079305 .. 19080143
839 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46490.1

Sequence Viewer

Length: 405 bp
ATGGCCGCCGACGGAATATTCCGCAGCATCTTCGAGGGTTGTATCTCCGGCCTTGATTCCGCCATCGAACGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTTCACGATAAATCAAGTGGCGCTGGGAAAAATCAAAATCAGCGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCAGAGAGCATCTCGTTCCCGATCCGAAGGTCTTGGAGCGAAGGCAACATCATGGCTATGAATCTCTTCTCCTCATCGTCGTCTTCTTCTAATCTCCAATCGCTTTCTTCGTCTTCTTCGCTCTCAAATCTGGCATCAGATTTACCGGTGGATAATGCTGCGACGGAGGAACCGAGCAGATCTAATAAACAGCTACGATGGACGATTGATGAAGGTGAAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.57

Weight (kDa)

6.29

Isoelectric Point (pI)

100.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46490 AT5G35110
fragaria_vesca FvH4_1g01610
malus_domestica MD02G1012800.v1.1 MD15G1158600.v1.1
prunus_persica Prupe.7G253800_v2.0.a1
pyrus_communis pycom15g14230
rosa_chinensis RchiOBHm_Chr2g0086561
rosa_laevigata RLG00000015767
rosa_multiflora Rmu_co8199806.1_g000001 Rmu_ssc0000449.1_g000004
rosa_roxburghii Rroxscaffold_2G00154440
rosa_rugosa Rorug01G0467900
rosa_samantha Rh2AG018900 Rh2BG018500 Rh2CG019400 Rh2DG020200
rosa_wichuraiana Rw2G001590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 6, 22, 60, 93, 152, 166
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 2 cut(s) 3, 149
AcyI GRCGYC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 69
AgeI ACCGGT 1 cut(s) 322
AluBI AGCT 2 cut(s) 177, 370
AluI AGCT 2 cut(s) 177, 370
Alw21I GWGCWC 1 cut(s) 103
AlwI GGATC 1 cut(s) 193
AoxI GGCC 3 cut(s) 3, 49, 149
ApeKI GCWGC 2 cut(s) 24, 335
AsiGI ACCGGT 1 cut(s) 322
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 404
BbsI GAAGAC 2 cut(s) 252, 282
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 36, 322
BccI CCATC 2 cut(s) 71, 369
BceAI ACGGC 3 cut(s) 86, 139, 164
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BfoI RGCGCY 1 cut(s) 126
BglII AGATCT 1 cut(s) 356
BisI GCNGC 5 cut(s) 6, 25, 152, 166, 336
BlsI GCNGC 5 cut(s) 7, 26, 153, 167, 337
BmiI GGNNCC 1 cut(s) 348
BmsI GCATC 3 cut(s) 36, 195, 320
BpiI GAAGAC 2 cut(s) 252, 282
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BsaHI GRCGYC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 238
BseX3I CGGCCG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 36, 322
BseYI CCCAGC 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 3 cut(s) 5, 51, 151
BshTI ACCGGT 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 103
BsiSI CCGG 2 cut(s) 48, 323
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 3 cut(s) 5, 51, 151
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 198, 356
BspACI CCGC 6 cut(s) 6, 22, 60, 93, 152, 166
BspANI GGCC 3 cut(s) 5, 51, 151
BspCNI CTCAG 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 198, 356
BssNI GRCGYC 1 cut(s) 73
Bst6I CTCTTC 2 cut(s) 108, 248
BstACI GRCGYC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 2 cut(s) 201, 359
BstMBI GATC 2 cut(s) 198, 356
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 3 cut(s) 151, 174, 183
BstV1I GCAGC 2 cut(s) 36, 322
BstV2I GAAGAC 2 cut(s) 252, 282
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BstZI CGGCCG 1 cut(s) 149
BsuRI GGCC 3 cut(s) 5, 51, 151
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 101
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 322
CseI GACGC 1 cut(s) 62
CspAI ACCGGT 1 cut(s) 322
CviAII CATG 1 cut(s) 229
CviJI RGCY 6 cut(s) 5, 51, 151, 177, 233, 370
CviKI_1 RGCY 6 cut(s) 5, 51, 151, 177, 233, 370
DdeI CTNAG 1 cut(s) 178
DpnI GATC 2 cut(s) 200, 358
DpnII GATC 2 cut(s) 198, 356
EaeI YGGCCR 2 cut(s) 3, 149
EagI CGGCCG 1 cut(s) 149
Eam1104I CTCTTC 2 cut(s) 108, 248
EarI CTCTTC 2 cut(s) 108, 248
EciI GGCGGA 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 149
Eco52I CGGCCG 1 cut(s) 149
FaeI CATG 1 cut(s) 232
FaiI YATR 2 cut(s) 230, 236
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 5 cut(s) 6, 25, 152, 166, 336
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 5 cut(s) 6, 25, 152, 166, 336
GlaI GCGC 1 cut(s) 124
GluI GCNGC 5 cut(s) 6, 25, 152, 166, 336
GsaI CCCAGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 3 cut(s) 5, 51, 151
HapII CCGG 2 cut(s) 48, 323
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 2 cut(s) 56, 238
HpaII CCGG 2 cut(s) 48, 323
HphI GGTGA 1 cut(s) 404
Hpy188I TCNGA 3 cut(s) 181, 203, 316
Hpy188III TCNNGA 2 cut(s) 107, 196
Hpy99I CGWCG 4 cut(s) 14, 150, 259, 343
HpyAV CCTTC 3 cut(s) 198, 212, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 174, 183
HpyF3I CTNAG 1 cut(s) 178
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 198, 356
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 4 cut(s) 61, 111, 293, 336
Lsp1109I GCAGC 2 cut(s) 36, 322
LweI GCATC 3 cut(s) 36, 195, 320
MalI GATC 2 cut(s) 200, 358
MboI GATC 2 cut(s) 198, 356
MboII GAAGA 8 cut(s) 22, 95, 235, 252, 255, 276, 282, 285
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 103
MnlI CCTC 3 cut(s) 28, 259, 337
MroXI GAANNNNTTC 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 2 cut(s) 48, 323
MwoI GCNNNNNNNGC 3 cut(s) 151, 174, 183
NdeII GATC 2 cut(s) 198, 356
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 108
PcsI WCGNNNNNNNCGW 2 cut(s) 284, 347
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 56, 238
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 5 cut(s) 7, 26, 153, 167, 337
PspFI CCCAGC 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 348
PsuI RGATCY 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 108
SatI GCNGC 5 cut(s) 6, 25, 152, 166, 336
Sau3AI GATC 2 cut(s) 198, 356
SduI GDGCHC 1 cut(s) 103
SetI ASST 4 cut(s) 179, 209, 372, 394
SfaNI GCATC 3 cut(s) 36, 195, 320
SmiMI CAYNNNNRTG 1 cut(s) 233
SsiI CCGC 6 cut(s) 6, 22, 60, 93, 152, 166
SspI AATATT 1 cut(s) 18
TaqI TCGA 2 cut(s) 33, 66
TauI GCSGC 3 cut(s) 8, 154, 168
TfiI GAWTC 2 cut(s) 56, 238
TseI GCWGC 2 cut(s) 24, 335
TspDTI ATGAA 2 cut(s) 251, 402
TspGWI ACGGA 3 cut(s) 27, 186, 356
XmnI GAANNNNTTC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.