Rh2BG018500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012962
Physical Location & Seq
Forward (+)
1366219 .. 1366656
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG018500.1

Sequence Viewer

Length: 438 bp
ATGTCTGCTGCTGCCGGCGCCGACGGGTTGTTCCGGTGCGGGGCCTACGAGGGGTGCATTTCCTGCAGCGACATAGGGAAGGAGCGGCGGCCTTACCACCGCAACTGCGGCTGCGCTTTGCACAACAGGTCGGAGAAGAAGGACCGGCAGCAGCAGCAGCAGCAGCATTGCACGCACGGAGGGCAAAAGAGTAAAAGCGTATCGTATCCCTTGAGGCGGGCATGGAGCGAAGGTCACTTGGGTTTGGTGGTGGCTAGTAATAACTCTTGTTGTTCAGGGCATTCCTCGCCTTCTTCATCACCGGCGGCTGCGGCTGGGGTCAGGCAGCCGCAGCCGGTGAGGCACCACCGGTTCGGTTCGGTGGGGTCGTTCGATCGGTTGAGTGCGTTCGACGAGGAGGAGGAGGAGGAAGAGGATATCGTTTTCTTTAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.87

Weight (kDa)

7.64

Isoelectric Point (pI)

78.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46490 AT5G35110
fragaria_vesca FvH4_1g01610
malus_domestica MD02G1012800.v1.1 MD15G1158600.v1.1
prunus_persica Prupe.7G253800_v2.0.a1
pyrus_communis pycom15g14230
rosa_chinensis RchiOBHm_Chr2g0086561
rosa_laevigata RLG00000015767
rosa_multiflora Rmu_co8199806.1_g000001 Rmu_ssc0000449.1_g000004
rosa_roxburghii Rroxscaffold_2G00154440
rosa_rugosa Rorug01G0467900
rosa_samantha Rh2AG018900 Rh2BG018500 Rh2CG019400 Rh2DG020200
rosa_wichuraiana Rw2G001590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 17, 342
AccBSI CCGCTC 1 cut(s) 85
AciI CCGC 9 cut(s) 39, 85, 88, 100, 108, 217, 305, 311, 329
AcyI GRCGYC 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 40, 51, 216
AgeI ACCGGT 1 cut(s) 348
AoxI GGCC 2 cut(s) 42, 89
AsiGI ACCGGT 1 cut(s) 348
AspLEI GCGC 2 cut(s) 20, 116
AspS9I GGNCC 2 cut(s) 42, 142
AsuHPI GGTGA 2 cut(s) 291, 349
AvaII GGWCC 1 cut(s) 142
BanI GGYRCC 2 cut(s) 17, 342
BciVI GTATCC 1 cut(s) 216
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 64
BfoI RGCGCY 1 cut(s) 21
BfuI GTATCC 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 340
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 42, 142
BmiI GGNNCC 3 cut(s) 19, 43, 344
BpuEI CTTGAG 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 18
BsaWI WCCGGW 2 cut(s) 33, 348
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 51, 216
Bse118I RCCGGY 5 cut(s) 14, 144, 301, 334, 348
Bse3DI GCAATG 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 40, 51, 216
BseMI GCAATG 1 cut(s) 166
BseRI GAGGAG 4 cut(s) 410, 413, 416, 419
BseYI CCCAGC 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 2 cut(s) 44, 91
BshNI GGYRCC 2 cut(s) 17, 342
BshTI ACCGGT 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 376
BsiSI CCGG 6 cut(s) 15, 34, 145, 302, 335, 349
BslI CCNNNNNNNGG 3 cut(s) 40, 51, 216
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 2 cut(s) 44, 91
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 9 cut(s) 39, 85, 88, 100, 108, 217, 305, 311, 329
BspANI GGCC 2 cut(s) 44, 91
BspLI GGNNCC 3 cut(s) 19, 43, 344
BspMAI CTGCAG 1 cut(s) 68
BspT107I GGYRCC 2 cut(s) 17, 342
BsrBI CCGCTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 166
BsrFI RCCGGY 5 cut(s) 14, 144, 301, 334, 348
BssAI RCCGGY 5 cut(s) 14, 144, 301, 334, 348
BssMI GATC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 16, 173, 219
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 116
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstMCI CGRYCG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 64
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 2 cut(s) 44, 91
Cac8I GCNNGC 3 cut(s) 16, 173, 219
CfoI GCGC 2 cut(s) 20, 116
Cfr10I RCCGGY 5 cut(s) 14, 144, 301, 334, 348
Cfr13I GGNCC 2 cut(s) 42, 142
CspAI ACCGGT 1 cut(s) 348
CviAII CATG 1 cut(s) 222
CviJI RGCY 8 cut(s) 44, 91, 111, 254, 308, 314, 328, 334
CviKI_1 RGCY 8 cut(s) 44, 91, 111, 254, 308, 314, 328, 334
DinI GGCGCC 1 cut(s) 19
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 42
EcoRV GATATC 1 cut(s) 418
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
FaeI CATG 1 cut(s) 225
FaiI YATR 2 cut(s) 74, 223
FatI CATG 1 cut(s) 221
FauI CCCGC 2 cut(s) 32, 210
FspBI CTAG 1 cut(s) 255
GlaI GCGC 2 cut(s) 19, 115
GsaI CCCAGC 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 44, 91
HapII CCGG 6 cut(s) 15, 34, 145, 302, 335, 349
HhaI GCGC 2 cut(s) 20, 116
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 225
Hin6I GCGC 2 cut(s) 18, 114
HinP1I GCGC 2 cut(s) 18, 114
HpaII CCGG 6 cut(s) 15, 34, 145, 302, 335, 349
HphI GGTGA 2 cut(s) 291, 349
Hpy188I TCNGA 2 cut(s) 133, 437
Hpy99I CGWCG 2 cut(s) 26, 395
HpyAV CCTTC 4 cut(s) 73, 133, 224, 300
HpyCH4V TGCA 4 cut(s) 57, 66, 121, 171
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 1 cut(s) 225
HspAI GCGC 2 cut(s) 18, 114
KasI GGCGCC 1 cut(s) 17
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 2 cut(s) 82, 225
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 375
MbiI CCGCTC 1 cut(s) 85
MboI GATC 1 cut(s) 373
MboII GAAGA 3 cut(s) 148, 285, 422
Mly113I GGCGCC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 111
MroNI GCCGGC 1 cut(s) 14
MseI TTAA 1 cut(s) 429
MspI CCGG 6 cut(s) 15, 34, 145, 302, 335, 349
Mva1269I GAATGC 1 cut(s) 280
NaeI GCCGGC 1 cut(s) 16
NarI GGCGCC 1 cut(s) 18
NdeII GATC 1 cut(s) 373
NgoMIV GCCGGC 1 cut(s) 14
NlaIII CATG 1 cut(s) 225
NlaIV GGNNCC 3 cut(s) 19, 43, 344
NmuCI GTSAC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PctI GAATGC 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 16
PinAI ACCGGT 1 cut(s) 348
Ple19I CGATCG 1 cut(s) 376
PluTI GGCGCC 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 314
PspN4I GGNNCC 3 cut(s) 19, 43, 344
PspPI GGNCC 2 cut(s) 42, 142
PstI CTGCAG 1 cut(s) 68
PvuI CGATCG 1 cut(s) 376
SaqAI TTAA 1 cut(s) 429
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 2 cut(s) 42, 142
SetI ASST 3 cut(s) 131, 235, 435
SfcI CTRYAG 1 cut(s) 64
SfoI GGCGCC 1 cut(s) 19
SgrAI CRCCGGYG 1 cut(s) 301
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SsiI CCGC 9 cut(s) 39, 85, 88, 100, 108, 217, 305, 311, 329
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 1 cut(s) 255
TaqI TCGA 2 cut(s) 372, 390
TauI GCSGC 6 cut(s) 88, 91, 111, 308, 314, 331
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 142
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.