Rroxscaffold_2G00154440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012962
Physical Location & Seq
Reverse (-)
91065539 .. 91065988
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154440.1

Sequence Viewer

Length: 450 bp
ATGTCTGCTGCTGCCGGCGCCGACGGGTTGTTCCGGTGCGGGGCCTACGAAGGGTGCATTTCAGGAAGCGACGTCGGGAAGGAACGGCGGCCGTACCACCGCAACTGCGGCTGCGCTTTGCACAACAGGTCGGAGAAGAAGCACCGGCAGCAGCAGCATTGCACGCACGGAGGGCAAAAGAGTAAAAGCGTATCGTATCCCTTGAGGCGGGCATGGAGCGAAGGGCACCTGGGTTTGGTGGTGGCTAGTAATAACTCTTGTTGTTCAGGGCATTCCTCGCCTTCTTCGTCACCCGCTGCGGCTGGGGTCAGGCAGCCGCAGCCGGTGAGGCACCACCGGTTCGGTTCGGTGGGGTCGTTCGATCGGTTGAGTGCGTTCGACGAGGAGGAGGAGGAAGAGGATATTGTTTTTTTAAGGTCTGATGTACAATTTGAGTGTGCTAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.19

Weight (kDa)

7.65

Isoelectric Point (pI)

77.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46490 AT5G35110
fragaria_vesca FvH4_1g01610
malus_domestica MD02G1012800.v1.1 MD15G1158600.v1.1
prunus_persica Prupe.7G253800_v2.0.a1
pyrus_communis pycom15g14230
rosa_chinensis RchiOBHm_Chr2g0086561
rosa_laevigata RLG00000015767
rosa_multiflora Rmu_co8199806.1_g000001 Rmu_ssc0000449.1_g000004
rosa_roxburghii Rroxscaffold_2G00154440
rosa_rugosa Rorug01G0467900
rosa_samantha Rh2AG018900 Rh2BG018500 Rh2CG019400 Rh2DG020200
rosa_wichuraiana Rw2G001590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccB1I GGYRCC 3 cut(s) 17, 225, 330
AciI CCGC 8 cut(s) 39, 88, 100, 108, 208, 294, 299, 317
AcoI YGGCCR 1 cut(s) 89
AcyI GRCGYC 2 cut(s) 18, 72
AfaI GTAC 2 cut(s) 95, 426
AfiI CCNNNNNNNGG 4 cut(s) 40, 51, 207, 235
AgeI ACCGGT 1 cut(s) 336
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 1 cut(s) 444
AluI AGCT 1 cut(s) 444
AoxI GGCC 2 cut(s) 42, 89
ApeKI GCWGC 9 cut(s) 8, 11, 111, 148, 151, 154, 296, 313, 319
AsiGI ACCGGT 1 cut(s) 336
AspLEI GCGC 2 cut(s) 20, 116
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 282, 337
AsuNHI GCTAGC 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 228
BanI GGYRCC 3 cut(s) 17, 225, 330
BbvI GCAGC 7 cut(s) 98, 160, 163, 166, 283, 325, 331
BceAI ACGGC 2 cut(s) 76, 101
BciT130I CCWGG 1 cut(s) 230
BciVI GTATCC 1 cut(s) 207
BfaI CTAG 2 cut(s) 246, 441
BfoI RGCGCY 1 cut(s) 21
BfuI GTATCC 1 cut(s) 207
BglI GCCNNNNNGGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 4 cut(s) 19, 43, 227, 332
BmrFI CCNGG 1 cut(s) 230
BmtI GCTAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 223
BsaHI GRCGYC 2 cut(s) 18, 72
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 2 cut(s) 33, 336
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 51, 207, 235
Bse118I RCCGGY 4 cut(s) 14, 144, 322, 336
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 4 cut(s) 40, 51, 207, 235
BseMI GCAATG 1 cut(s) 157
BseRI GAGGAG 3 cut(s) 398, 401, 404
BseSI GKGCMC 1 cut(s) 228
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 7 cut(s) 98, 160, 163, 166, 283, 325, 331
BseYI CCCAGC 1 cut(s) 302
Bsh1285I CGRYCG 2 cut(s) 92, 364
BshFI GGCC 2 cut(s) 44, 91
BshNI GGYRCC 3 cut(s) 17, 225, 330
BshTI ACCGGT 1 cut(s) 336
BsiEI CGRYCG 2 cut(s) 92, 364
BsiSI CCGG 5 cut(s) 15, 34, 145, 323, 337
BslI CCNNNNNNNGG 4 cut(s) 40, 51, 207, 235
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 44, 91
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 8 cut(s) 39, 88, 100, 108, 208, 294, 299, 317
BspANI GGCC 2 cut(s) 44, 91
BspLI GGNNCC 4 cut(s) 19, 43, 227, 332
BspOI GCTAGC 1 cut(s) 444
BspT107I GGYRCC 3 cut(s) 17, 225, 330
BsrDI GCAATG 1 cut(s) 157
BsrFI RCCGGY 4 cut(s) 14, 144, 322, 336
BsrGI TGTACA 1 cut(s) 424
BssAI RCCGGY 4 cut(s) 14, 144, 322, 336
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 2 cut(s) 18, 72
Bst2UI CCWGG 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 2 cut(s) 18, 72
BstAUI TGTACA 1 cut(s) 424
BstC8I GCNNGC 4 cut(s) 16, 164, 210, 442
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 116
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMCI CGRYCG 2 cut(s) 92, 364
BstMWI GCNNNNNNNGC 9 cut(s) 17, 108, 148, 154, 163, 172, 277, 319, 328
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 7 cut(s) 98, 160, 163, 166, 283, 325, 331
BstZI CGGCCG 1 cut(s) 89
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 2 cut(s) 44, 91
Cac8I GCNNGC 4 cut(s) 16, 164, 210, 442
CfoI GCGC 2 cut(s) 20, 116
Cfr10I RCCGGY 4 cut(s) 14, 144, 322, 336
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 94, 425
CspAI ACCGGT 1 cut(s) 336
CviAII CATG 1 cut(s) 213
CviJI RGCY 8 cut(s) 44, 91, 111, 245, 302, 316, 322, 444
CviKI_1 RGCY 8 cut(s) 44, 91, 111, 245, 302, 316, 322, 444
CviQI GTAC 2 cut(s) 94, 425
DinI GGCGCC 1 cut(s) 19
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
EclXI CGGCCG 1 cut(s) 89
Eco52I CGGCCG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 228
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
FaeI CATG 1 cut(s) 216
FaiI YATR 1 cut(s) 214
FatI CATG 1 cut(s) 212
FauI CCCGC 3 cut(s) 32, 201, 301
FspBI CTAG 2 cut(s) 246, 441
GlaI GCGC 2 cut(s) 19, 115
GsaI CCCAGC 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 44, 91
HapII CCGG 5 cut(s) 15, 34, 145, 323, 337
HhaI GCGC 2 cut(s) 20, 116
Hin1I GRCGYC 2 cut(s) 18, 72
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 2 cut(s) 18, 114
HinP1I GCGC 2 cut(s) 18, 114
HpaII CCGG 5 cut(s) 15, 34, 145, 323, 337
HphI GGTGA 2 cut(s) 282, 337
Hpy188I TCNGA 2 cut(s) 133, 421
Hpy188III TCNNGA 2 cut(s) 63, 76
Hpy99I CGWCG 4 cut(s) 26, 74, 77, 383
HpyAV CCTTC 4 cut(s) 44, 73, 215, 291
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 57, 121, 162
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 108, 148, 154, 163, 172, 277, 319, 328
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 2 cut(s) 18, 72
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 2 cut(s) 18, 114
KasI GGCGCC 1 cut(s) 17
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 216
Lsp1109I GCAGC 7 cut(s) 98, 160, 163, 166, 283, 325, 331
MaeI CTAG 2 cut(s) 246, 441
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 288
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 3 cut(s) 148, 276, 407
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 428
Mly113I GGCGCC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 9 cut(s) 164, 198, 286, 321, 376, 379, 382, 385, 391
MroNI GCCGGC 1 cut(s) 14
MseI TTAA 2 cut(s) 413, 448
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 5 cut(s) 15, 34, 145, 323, 337
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 9 cut(s) 17, 108, 148, 154, 163, 172, 277, 319, 328
NaeI GCCGGC 1 cut(s) 16
NarI GGCGCC 1 cut(s) 18
NdeII GATC 1 cut(s) 361
NgoMIV GCCGGC 1 cut(s) 14
NheI GCTAGC 1 cut(s) 440
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 4 cut(s) 19, 43, 227, 332
NmuCI GTSAC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 2 cut(s) 284, 353
PctI GAATGC 1 cut(s) 271
PdiI GCCGGC 1 cut(s) 16
PinAI ACCGGT 1 cut(s) 336
Ple19I CGATCG 1 cut(s) 364
PluTI GGCGCC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 4 cut(s) 19, 43, 227, 332
PspPI GGNCC 1 cut(s) 42
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 2 cut(s) 95, 426
RsaNI GTAC 2 cut(s) 94, 425
SaqAI TTAA 2 cut(s) 413, 448
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 228
SetI ASST 5 cut(s) 75, 131, 231, 419, 446
SfoI GGCGCC 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 428
SsiI CCGC 8 cut(s) 39, 88, 100, 108, 208, 294, 299, 317
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 2 cut(s) 246, 441
StyD4I CCNGG 1 cut(s) 228
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 360, 378
TasI AATT 1 cut(s) 428
TatI WGTACW 1 cut(s) 424
TauI GCSGC 4 cut(s) 91, 111, 302, 319
Tru1I TTAA 2 cut(s) 413, 448
Tru9I TTAA 2 cut(s) 413, 448
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 9 cut(s) 8, 11, 111, 148, 151, 154, 296, 313, 319
Tsp45I GTSAC 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 183
XspI CTAG 2 cut(s) 246, 441
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.